Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGCTGTCAAGAACGTAGAGGAGGTAGGATGGGCAGTTGGTCAGATCTAGTATGGATCGTACATGGACGGTAGTTGGAGTCGGCGGCTCTCTTAGGGTTCCCTCATCTGGGATCCCTGGGGAAGAGGATCAAGTTGGCCCTTGCGAACAGCTTGATGCACTATCTCCCTTCAACCCTTTGAGCGAAATGCGGCAAAAGGAAGGAAAATCCATGGACCGACCCCATCGTCTCCACCCCGTAGGAACTACGAGATCACCCCAAGGACGCCTTCGGTATCCAGGGGTCGCGGACCGACCATAGAACCCTGTTCAATAAGTGGAACGCATTAGCTGTCCGCTCTCCGGTTGGGCAGTAAGGGTCGGAGAAGGGCAATCACTCATTCTTAAAACCAGCATTCTTAAGACCAAAGAGGCGGGCGGAAAAGGGGGGAAAGCTCTCCGTTCCTGGTTCTCCTGTAGCTGGATTCTCCGGAACCACAAGAATCCTTAGTTAGAATGGGATTCCAACTCAGTACCTTTTGAGATTTTGAGAAGAGTTGCTCTTTGGAGAGCACAGTACGATGAAAGTTGTAAGCTGTGTTCGGGGGGGAGTTATTGTCTATCGTTGGCCTCTATGGTAGAATCAGTCGGGGGCCTGAGAGGCGGTGGTTTACCCTGTGGCGGATGTCAGCGGTTCGAGTCCGCTTATCTCCAACTCGTGAACTTAGCCGATACAAAGCTATATGATAGCACTCCATTTTTCCGATTCGGCAGTTCGATCTATTATTTATCATTCATGGACGTTGATAAGATCCTTCCATTTAGCAGCACCTTAGGATGGCATAGCCTTAAAGTTAAGGGCGAGGTTCAAACGAAGAAAGGCTTACGGTGGATACCTAGGCACCCAGAGACGAGGAAGGGCGTAGTAAGCGACGAAATGCTTCGGGGAGTTGCAAATAAGCGTAGATCCGGAGATTCCCGAATAGGTCAACCTTTCAAACTGCTGCTGAATCCATGGGCAGGCAAGAGACAACCTGGCGAACTGAAACATCTTAGTAGCCAGAGGAAAAGAAAGCAAAAGCGATTCCCGTAG
mRNA sequence
ATGGGCTGTCAAGAACGTAGAGGAGTAAGGGTCGGAGAAGGGCAATCACTCATTCTTAAAACCAGCATTCTTAAGACCAAAGAGGCGGGCGGAAAAGGGGGGAAAGCTCTCCAATGGGATTCCAACTCAGTACCTTTTGAGATTTTGAGAAGAGTTGCTCTTTGGAGAGCACATTCGATCTATTATTTATCATTCATGGACGTTGATAAGATCCTTCCATTTAGCAGCACCTTAGGATGGCATAGCCTTAAAGTTAAGGGCGAGGTTCAAACGAAGAAAGGCTTACGGTGGATACCTAGGCACCCAGAGACGAGGAAGGGCGTAGTAAGCGACGAAATGCTTCGGGGAGTTGCAAATAAGCGTAGATCCGGAGATTCCCGAATAGGTCAACCTTTCAAACTGCTGCTGAATCCATGGGCAGGCAAGAGACAACCTGGCGAACTGAAACATCTTAGTAGCCAGAGGAAAAGAAAGCAAAAGCGATTCCCGTAG
Coding sequence (CDS)
ATGGGCTGTCAAGAACGTAGAGGAGTAAGGGTCGGAGAAGGGCAATCACTCATTCTTAAAACCAGCATTCTTAAGACCAAAGAGGCGGGCGGAAAAGGGGGGAAAGCTCTCCAATGGGATTCCAACTCAGTACCTTTTGAGATTTTGAGAAGAGTTGCTCTTTGGAGAGCACATTCGATCTATTATTTATCATTCATGGACGTTGATAAGATCCTTCCATTTAGCAGCACCTTAGGATGGCATAGCCTTAAAGTTAAGGGCGAGGTTCAAACGAAGAAAGGCTTACGGTGGATACCTAGGCACCCAGAGACGAGGAAGGGCGTAGTAAGCGACGAAATGCTTCGGGGAGTTGCAAATAAGCGTAGATCCGGAGATTCCCGAATAGGTCAACCTTTCAAACTGCTGCTGAATCCATGGGCAGGCAAGAGACAACCTGGCGAACTGAAACATCTTAGTAGCCAGAGGAAAAGAAAGCAAAAGCGATTCCCGTAG
Protein sequence
MGCQERRGVRVGEGQSLILKTSILKTKEAGGKGGKALQWDSNSVPFEILRRVALWRAHSIYYLSFMDVDKILPFSSTLGWHSLKVKGEVQTKKGLRWIPRHPETRKGVVSDEMLRGVANKRRSGDSRIGQPFKLLLNPWAGKRQPGELKHLSSQRKRKQKRFP
Homology
BLAST of PI0028066 vs. ExPASy TrEMBL
Match:
A0A072TVZ8 (Uncharacterized protein OS=Medicago truncatula OX=3880 GN=MTR_0002s0250 PE=4 SV=1)
HSP 1 Score: 229.6 bits (584), Expect = 9.6e-57
Identity = 131/203 (64.53%), Postives = 142/203 (69.95%), Query Frame = 0
Query: 1 MGCQERRGVRVGEGQSLILKTSIL--KTKEAGGKGGK------------------ALQWD 60
MGCQ+RRGVRVGEGQSL+LKTSIL K KE+GGK G+ + +
Sbjct: 11 MGCQKRRGVRVGEGQSLVLKTSILKFKIKESGGKRGELPVPGSPVTGFPGTTRILRMGFQ 70
Query: 61 SNSVPFEILRRVALWRAH--------------------SIYYLSFMDVDKILPFSSTLGW 120
++ FEILRRVALWRA Y LSFMDVDKILP SSTLGW
Sbjct: 71 LSTFCFEILRRVALWRAQYDESCKLCSGGSYCLSLASMLWYALSFMDVDKILPSSSTLGW 130
Query: 121 HSLKVKGEVQTKKGLRWIPRHPETRKGVVSDEMLRGVANKRRSGDSRIGQPFKLLLNPWA 164
L+VKGEVQT+KGL WIPRHPETRKGVVSDEMLRGV NK RS DSRIGQPF+LLLN A
Sbjct: 131 PRLQVKGEVQTRKGLWWIPRHPETRKGVVSDEMLRGVENKHRSEDSRIGQPFELLLNSRA 190
BLAST of PI0028066 vs. ExPASy TrEMBL
Match:
A0A452YTU0 (Uncharacterized protein OS=Aegilops tauschii subsp. strangulata OX=200361 PE=4 SV=1)
HSP 1 Score: 208.4 bits (529), Expect = 2.3e-50
Identity = 106/152 (69.74%), Postives = 117/152 (76.97%), Query Frame = 0
Query: 1 MGCQERRGVRVGEGQSLILKTSILKTKEAGGKGGK------------------ALQWDSN 60
MGCQ+ RGVRVGEGQSL+LKTSILK KE+GGK G+ + + +
Sbjct: 1 MGCQKGRGVRVGEGQSLVLKTSILKIKESGGKRGELPVPGSPVTGFPGTTRILRMGFQLS 60
Query: 61 SVPFEILRRVALWRAHSIYYLSFMDVDKILPFSSTLGWHSLKVKGEVQTKKGLRWIPRHP 120
+ FEILRRVALWRAHSIY +FMDVDKILPFSSTLGWHSL V GEVQ +KGLRWIPRHP
Sbjct: 61 TFCFEILRRVALWRAHSIYDFTFMDVDKILPFSSTLGWHSLNVNGEVQKRKGLRWIPRHP 120
Query: 121 ETRKGVVSDEMLRGVANKRRSGDSRIGQPFKL 135
ETRKGV SDEMLRGV NK RSGDS+IGQPFKL
Sbjct: 121 ETRKGVASDEMLRGVENKHRSGDSQIGQPFKL 152
BLAST of PI0028066 vs. ExPASy TrEMBL
Match:
A0A2N9HUL9 (Uncharacterized protein ycf68 OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS43295 PE=3 SV=1)
HSP 1 Score: 208.0 bits (528), Expect = 3.0e-50
Identity = 101/105 (96.19%), Postives = 103/105 (98.10%), Query Frame = 0
Query: 59 SIYYLSFMDVDKILPFSSTLGWHSLKVKGEVQTKKGLRWIPRHPETRKGVVSDEMLRGVA 118
SIY LSFMDVDKILPFSSTLGWHSLKVKGEVQT+KGLRWIPRHPETRKGVVSDEMLRGV
Sbjct: 48 SIYDLSFMDVDKILPFSSTLGWHSLKVKGEVQTRKGLRWIPRHPETRKGVVSDEMLRGVE 107
Query: 119 NKRRSGDSRIGQPFKLLLNPWAGKRQPGELKHLSSQRKRKQKRFP 164
NKRRSGDSRIGQPF+LLLNPWAGKRQPGELKHLSSQRKRKQKRFP
Sbjct: 108 NKRRSGDSRIGQPFELLLNPWAGKRQPGELKHLSSQRKRKQKRFP 152
BLAST of PI0028066 vs. ExPASy TrEMBL
Match:
A0A2P2JY74 (Uncharacterized protein ycf68 OS=Rhizophora mucronata OX=61149 PE=3 SV=1)
HSP 1 Score: 203.4 bits (516), Expect = 7.4e-49
Identity = 101/107 (94.39%), Postives = 103/107 (96.26%), Query Frame = 0
Query: 59 SIYYLSFMDVDKILPFSSTLGWHS--LKVKGEVQTKKGLRWIPRHPETRKGVVSDEMLRG 118
SIY LSFMDVDKILPFSSTLGWHS LKVKGEVQT+KGLRWIPRHPETRKGVVSDEMLRG
Sbjct: 48 SIYDLSFMDVDKILPFSSTLGWHSLNLKVKGEVQTRKGLRWIPRHPETRKGVVSDEMLRG 107
Query: 119 VANKRRSGDSRIGQPFKLLLNPWAGKRQPGELKHLSSQRKRKQKRFP 164
V NKRRSGDSRIGQPFKLLLNPWAGKRQPGELKHLS+QRKRKQKRFP
Sbjct: 108 VENKRRSGDSRIGQPFKLLLNPWAGKRQPGELKHLSNQRKRKQKRFP 154
BLAST of PI0028066 vs. ExPASy TrEMBL
Match:
A0A5K1HX37 (Uncharacterized protein (Fragment) OS=Nymphaea colorata OX=210225 GN=NYM_LOCUS30893 PE=4 SV=1)
HSP 1 Score: 200.7 bits (509), Expect = 4.8e-48
Identity = 97/105 (92.38%), Postives = 99/105 (94.29%), Query Frame = 0
Query: 59 SIYYLSFMDVDKILPFSSTLGWHSLKVKGEVQTKKGLRWIPRHPETRKGVVSDEMLRGVA 118
SIY LSFMDVDKILPFSSTLGWHSL V GEVQT+KGLRWIPRHPETRKGV SDEMLRGV
Sbjct: 1 SIYDLSFMDVDKILPFSSTLGWHSLNVNGEVQTRKGLRWIPRHPETRKGVASDEMLRGVE 60
Query: 119 NKRRSGDSRIGQPFKLLLNPWAGKRQPGELKHLSSQRKRKQKRFP 164
NK RSGDSRIGQPF+LLLNPWAGKRQPGELKHLSSQRKRKQKRFP
Sbjct: 61 NKHRSGDSRIGQPFELLLNPWAGKRQPGELKHLSSQRKRKQKRFP 105
BLAST of PI0028066 vs. NCBI nr
Match:
KEH17695.1 (hypothetical protein MTR_0002s0250 [Medicago truncatula])
HSP 1 Score: 229.6 bits (584), Expect = 2.0e-56
Identity = 131/203 (64.53%), Postives = 142/203 (69.95%), Query Frame = 0
Query: 1 MGCQERRGVRVGEGQSLILKTSIL--KTKEAGGKGGK------------------ALQWD 60
MGCQ+RRGVRVGEGQSL+LKTSIL K KE+GGK G+ + +
Sbjct: 11 MGCQKRRGVRVGEGQSLVLKTSILKFKIKESGGKRGELPVPGSPVTGFPGTTRILRMGFQ 70
Query: 61 SNSVPFEILRRVALWRAH--------------------SIYYLSFMDVDKILPFSSTLGW 120
++ FEILRRVALWRA Y LSFMDVDKILP SSTLGW
Sbjct: 71 LSTFCFEILRRVALWRAQYDESCKLCSGGSYCLSLASMLWYALSFMDVDKILPSSSTLGW 130
Query: 121 HSLKVKGEVQTKKGLRWIPRHPETRKGVVSDEMLRGVANKRRSGDSRIGQPFKLLLNPWA 164
L+VKGEVQT+KGL WIPRHPETRKGVVSDEMLRGV NK RS DSRIGQPF+LLLN A
Sbjct: 131 PRLQVKGEVQTRKGLWWIPRHPETRKGVVSDEMLRGVENKHRSEDSRIGQPFELLLNSRA 190
BLAST of PI0028066 vs. NCBI nr
Match:
KAG5222336.1 (Vacuolar protein sorting-associated protein [Salix suchowensis])
HSP 1 Score: 205.7 bits (522), Expect = 3.1e-49
Identity = 100/105 (95.24%), Postives = 102/105 (97.14%), Query Frame = 0
Query: 59 SIYYLSFMDVDKILPFSSTLGWHSLKVKGEVQTKKGLRWIPRHPETRKGVVSDEMLRGVA 118
SIY LSFMDVDKILPFSSTLGWHSLKVKGEVQT+KGLRWIPRHPETRKGVVSDEMLRGV
Sbjct: 132 SIYDLSFMDVDKILPFSSTLGWHSLKVKGEVQTRKGLRWIPRHPETRKGVVSDEMLRGVE 191
Query: 119 NKRRSGDSRIGQPFKLLLNPWAGKRQPGELKHLSSQRKRKQKRFP 164
NKRRSGDSRIGQPFKLL NPWAGKRQPGELKHLS+QRKRKQKRFP
Sbjct: 192 NKRRSGDSRIGQPFKLLPNPWAGKRQPGELKHLSNQRKRKQKRFP 236
BLAST of PI0028066 vs. NCBI nr
Match:
KAF7117209.1 (hypothetical protein RHSIM_RhsimPtG0005300 [Rhododendron simsii])
HSP 1 Score: 203.4 bits (516), Expect = 1.5e-48
Identity = 99/105 (94.29%), Postives = 101/105 (96.19%), Query Frame = 0
Query: 59 SIYYLSFMDVDKILPFSSTLGWHSLKVKGEVQTKKGLRWIPRHPETRKGVVSDEMLRGVA 118
SIY LSFMDVDKILPFSSTLGWHSLKVKGEVQT+KGLRWIPRHPETRKGVVSDEMLRGV
Sbjct: 77 SIYDLSFMDVDKILPFSSTLGWHSLKVKGEVQTRKGLRWIPRHPETRKGVVSDEMLRGVE 136
Query: 119 NKRRSGDSRIGQPFKLLLNPWAGKRQPGELKHLSSQRKRKQKRFP 164
NK RSGDSRIGQPF+LLLNPWA KRQPGELKHLSSQRKRKQKRFP
Sbjct: 137 NKHRSGDSRIGQPFELLLNPWADKRQPGELKHLSSQRKRKQKRFP 181
BLAST of PI0028066 vs. NCBI nr
Match:
VVW91297.1 (unnamed protein product, partial [Nymphaea colorata])
HSP 1 Score: 200.7 bits (509), Expect = 9.9e-48
Identity = 97/105 (92.38%), Postives = 99/105 (94.29%), Query Frame = 0
Query: 59 SIYYLSFMDVDKILPFSSTLGWHSLKVKGEVQTKKGLRWIPRHPETRKGVVSDEMLRGVA 118
SIY LSFMDVDKILPFSSTLGWHSL V GEVQT+KGLRWIPRHPETRKGV SDEMLRGV
Sbjct: 1 SIYDLSFMDVDKILPFSSTLGWHSLNVNGEVQTRKGLRWIPRHPETRKGVASDEMLRGVE 60
Query: 119 NKRRSGDSRIGQPFKLLLNPWAGKRQPGELKHLSSQRKRKQKRFP 164
NK RSGDSRIGQPF+LLLNPWAGKRQPGELKHLSSQRKRKQKRFP
Sbjct: 61 NKHRSGDSRIGQPFELLLNPWAGKRQPGELKHLSSQRKRKQKRFP 105
BLAST of PI0028066 vs. NCBI nr
Match:
KAB8477469.1 (hypothetical protein FH972_025335 [Carpinus fangiana])
HSP 1 Score: 200.3 bits (508), Expect = 1.3e-47
Identity = 96/98 (97.96%), Postives = 97/98 (98.98%), Query Frame = 0
Query: 66 MDVDKILPFSSTLGWHSLKVKGEVQTKKGLRWIPRHPETRKGVVSDEMLRGVANKRRSGD 125
MDVDKILPFSSTLGWHSLKVKGEVQT+KGLRWIPRHPETRKGVVSDEMLRGV NKRRSGD
Sbjct: 1 MDVDKILPFSSTLGWHSLKVKGEVQTRKGLRWIPRHPETRKGVVSDEMLRGVENKRRSGD 60
Query: 126 SRIGQPFKLLLNPWAGKRQPGELKHLSSQRKRKQKRFP 164
SRIGQPFKLLLNPWAGKRQPGELKHLSSQRKRKQKRFP
Sbjct: 61 SRIGQPFKLLLNPWAGKRQPGELKHLSSQRKRKQKRFP 98
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A072TVZ8 | 9.6e-57 | 64.53 | Uncharacterized protein OS=Medicago truncatula OX=3880 GN=MTR_0002s0250 PE=4 SV=... | [more] |
A0A452YTU0 | 2.3e-50 | 69.74 | Uncharacterized protein OS=Aegilops tauschii subsp. strangulata OX=200361 PE=4 S... | [more] |
A0A2N9HUL9 | 3.0e-50 | 96.19 | Uncharacterized protein ycf68 OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS43295 PE=3... | [more] |
A0A2P2JY74 | 7.4e-49 | 94.39 | Uncharacterized protein ycf68 OS=Rhizophora mucronata OX=61149 PE=3 SV=1 | [more] |
A0A5K1HX37 | 4.8e-48 | 92.38 | Uncharacterized protein (Fragment) OS=Nymphaea colorata OX=210225 GN=NYM_LOCUS30... | [more] |
Match Name | E-value | Identity | Description | |
KEH17695.1 | 2.0e-56 | 64.53 | hypothetical protein MTR_0002s0250 [Medicago truncatula] | [more] |
KAG5222336.1 | 3.1e-49 | 95.24 | Vacuolar protein sorting-associated protein [Salix suchowensis] | [more] |
KAF7117209.1 | 1.5e-48 | 94.29 | hypothetical protein RHSIM_RhsimPtG0005300 [Rhododendron simsii] | [more] |
VVW91297.1 | 9.9e-48 | 92.38 | unnamed protein product, partial [Nymphaea colorata] | [more] |
KAB8477469.1 | 1.3e-47 | 97.96 | hypothetical protein FH972_025335 [Carpinus fangiana] | [more] |
Match Name | E-value | Identity | Description | |