PI0027558 (gene) Melon (PI 482460) v1

Overview
NamePI0027558
Typegene
OrganismCucumis metuliferus (Melon (PI 482460) v1)
DescriptionRetrotransposon protein
Locationchr10: 967684 .. 967848 (-)
RNA-Seq ExpressionPI0027558
SyntenyPI0027558
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACGAGCGCCAATGTGACAGAGGACTACGACGAGGGTGATTCGACGTATGCAACAACTGCATGTGACGACATCCACTACATGAAAACCTCCAATGAATGGAGTCAATGGAGGGATGATCTAGCTAAAGAACTATTCAGTGAATGGGAGTTACGTAATCAGTAG

mRNA sequence

ATGACGAGCGCCAATGTGACAGAGGACTACGACGAGGGTGATTCGACGTATGCAACAACTGCATGTGACGACATCCACTACATGAAAACCTCCAATGAATGGAGTCAATGGAGGGATGATCTAGCTAAAGAACTATTCAGTGAATGGGAGTTACGTAATCAGTAG

Coding sequence (CDS)

ATGACGAGCGCCAATGTGACAGAGGACTACGACGAGGGTGATTCGACGTATGCAACAACTGCATGTGACGACATCCACTACATGAAAACCTCCAATGAATGGAGTCAATGGAGGGATGATCTAGCTAAAGAACTATTCAGTGAATGGGAGTTACGTAATCAGTAG

Protein sequence

MTSANVTEDYDEGDSTYATTACDDIHYMKTSNEWSQWRDDLAKELFSEWELRNQ
Homology
[Close]
BLAST of PI0027558 vs. ExPASy TrEMBL
Match: A0A5D3D9Z3 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold519G00220 PE=3 SV=1)

HSP 1 Score: 86.7 bits (213), Expect = 3.3e-14
Identity = 38/54 (70.37%), Postives = 49/54 (90.74%), Query Frame = 0 

Query: 1   MTSANVTEDYDEGDSTYATTACDDIHYMKTSNEWSQWRDDLAKELFSEWELRNQ 55
           MT+ ++ ++ DE DST+ATTA DDIHY++TSNEWSQWRDDLA+E+F+EWELRNQ
Sbjct: 313 MTNFDIEDNIDEVDSTHATTAADDIHYIETSNEWSQWRDDLAEEMFTEWELRNQ 366

[Close]
BLAST of PI0027558 vs. ExPASy TrEMBL
Match: A0A5A7TWH8 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold498G001380 PE=3 SV=1)

HSP 1 Score: 86.7 bits (213), Expect = 3.3e-14
Identity = 38/54 (70.37%), Postives = 49/54 (90.74%), Query Frame = 0 

Query: 1   MTSANVTEDYDEGDSTYATTACDDIHYMKTSNEWSQWRDDLAKELFSEWELRNQ 55
           MT+ ++ ++ DE DST+ATTA DDIHY++TSNEWSQWRDDLA+E+F+EWELRNQ
Sbjct: 335 MTNFDIEDNIDEVDSTHATTAADDIHYIETSNEWSQWRDDLAEEMFTEWELRNQ 388

[Close]
BLAST of PI0027558 vs. ExPASy TrEMBL
Match: A0A5A7UGH9 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold131G00700 PE=3 SV=1)

HSP 1 Score: 86.7 bits (213), Expect = 3.3e-14
Identity = 38/54 (70.37%), Postives = 49/54 (90.74%), Query Frame = 0 

Query: 1   MTSANVTEDYDEGDSTYATTACDDIHYMKTSNEWSQWRDDLAKELFSEWELRNQ 55
           MT+ ++ ++ DE DST+ATTA DDIHY++TSNEWSQWRDDLA+E+F+EWELRNQ
Sbjct: 218 MTNFDIEDNIDEVDSTHATTAADDIHYIETSNEWSQWRDDLAEEMFTEWELRNQ 271

[Close]
BLAST of PI0027558 vs. ExPASy TrEMBL
Match: A0A5A7VHB0 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold37G00240 PE=3 SV=1)

HSP 1 Score: 86.7 bits (213), Expect = 3.3e-14
Identity = 38/54 (70.37%), Postives = 49/54 (90.74%), Query Frame = 0 

Query: 1   MTSANVTEDYDEGDSTYATTACDDIHYMKTSNEWSQWRDDLAKELFSEWELRNQ 55
           MT+ ++ ++ DE DST+ATTA DDIHY++TSNEWSQWRDDLA+E+F+EWELRNQ
Sbjct: 335 MTNFDIEDNIDEVDSTHATTAADDIHYIETSNEWSQWRDDLAEEMFTEWELRNQ 388

[Close]
BLAST of PI0027558 vs. ExPASy TrEMBL
Match: A0A5A7VG29 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold3818G00010 PE=3 SV=1)

HSP 1 Score: 86.7 bits (213), Expect = 3.3e-14
Identity = 38/54 (70.37%), Postives = 49/54 (90.74%), Query Frame = 0 

Query: 1   MTSANVTEDYDEGDSTYATTACDDIHYMKTSNEWSQWRDDLAKELFSEWELRNQ 55
           MT+ ++ ++ DE DST+ATTA DDIHY++TSNEWSQWRDDLA+E+F+EWELRNQ
Sbjct: 335 MTNFDIEDNIDEVDSTHATTAADDIHYIETSNEWSQWRDDLAEEMFTEWELRNQ 388

[Close]
BLAST of PI0027558 vs. NCBI nr
Match: KAA0065286.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 86.7 bits (213), Expect = 6.9e-14
Identity = 38/54 (70.37%), Postives = 49/54 (90.74%), Query Frame = 0 

Query: 1   MTSANVTEDYDEGDSTYATTACDDIHYMKTSNEWSQWRDDLAKELFSEWELRNQ 55
           MT+ ++ ++ DE DST+ATTA DDIHY++TSNEWSQWRDDLA+E+F+EWELRNQ
Sbjct: 335 MTNFDIEDNIDEVDSTHATTAADDIHYIETSNEWSQWRDDLAEEMFTEWELRNQ 388

[Close]
BLAST of PI0027558 vs. NCBI nr
Match: KAA0048281.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 86.7 bits (213), Expect = 6.9e-14
Identity = 38/54 (70.37%), Postives = 49/54 (90.74%), Query Frame = 0 

Query: 1   MTSANVTEDYDEGDSTYATTACDDIHYMKTSNEWSQWRDDLAKELFSEWELRNQ 55
           MT+ ++ ++ DE DST+ATTA DDIHY++TSNEWSQWRDDLA+E+F+EWELRNQ
Sbjct: 269 MTNFDIEDNIDEVDSTHATTAADDIHYIETSNEWSQWRDDLAEEMFTEWELRNQ 322

[Close]
BLAST of PI0027558 vs. NCBI nr
Match: KAA0068124.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 86.7 bits (213), Expect = 6.9e-14
Identity = 38/54 (70.37%), Postives = 49/54 (90.74%), Query Frame = 0 

Query: 1   MTSANVTEDYDEGDSTYATTACDDIHYMKTSNEWSQWRDDLAKELFSEWELRNQ 55
           MT+ ++ ++ DE DST+ATTA DDIHY++TSNEWSQWRDDLA+E+F+EWELRNQ
Sbjct: 290 MTNFDIEDNIDEVDSTHATTAADDIHYIETSNEWSQWRDDLAEEMFTEWELRNQ 343

[Close]
BLAST of PI0027558 vs. NCBI nr
Match: KAA0054148.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 86.7 bits (213), Expect = 6.9e-14
Identity = 38/54 (70.37%), Postives = 49/54 (90.74%), Query Frame = 0 

Query: 1   MTSANVTEDYDEGDSTYATTACDDIHYMKTSNEWSQWRDDLAKELFSEWELRNQ 55
           MT+ ++ ++ DE DST+ATTA DDIHY++TSNEWSQWRDDLA+E+F+EWELRNQ
Sbjct: 218 MTNFDIEDNIDEVDSTHATTAADDIHYIETSNEWSQWRDDLAEEMFTEWELRNQ 271

[Close]
BLAST of PI0027558 vs. NCBI nr
Match: KAA0054554.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYK20397.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 86.7 bits (213), Expect = 6.9e-14
Identity = 38/54 (70.37%), Postives = 49/54 (90.74%), Query Frame = 0 

Query: 1   MTSANVTEDYDEGDSTYATTACDDIHYMKTSNEWSQWRDDLAKELFSEWELRNQ 55
           MT+ ++ ++ DE DST+ATTA DDIHY++TSNEWSQWRDDLA+E+F+EWELRNQ
Sbjct: 313 MTNFDIEDNIDEVDSTHATTAADDIHYIETSNEWSQWRDDLAEEMFTEWELRNQ 366

The following BLAST results are available for this feature:
BLAST of PI0027558 vs.
Match NameE-valueIdentityDescription
BLAST of PI0027558 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5D3D9Z33.3e-1470.37Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5A7TWH83.3e-1470.37Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A5A7UGH93.3e-1470.37Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A5A7VHB03.3e-1470.37Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A5A7VG293.3e-1470.37Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
BLAST of PI0027558 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0065286.16.9e-1470.37retrotransposon protein [Cucumis melo var. makuwa][more]
KAA0048281.16.9e-1470.37retrotransposon protein [Cucumis melo var. makuwa][more]
KAA0068124.16.9e-1470.37retrotransposon protein [Cucumis melo var. makuwa][more]
KAA0054148.16.9e-1470.37retrotransposon protein [Cucumis melo var. makuwa][more]
KAA0054554.16.9e-1470.37retrotransposon protein [Cucumis melo var. makuwa] >TYK20397.1 retrotransposon p... [more]
BLAST of PI0027558 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
PI0027558.1PI0027558.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0046872 metal ion binding