PI0027423 (gene) Melon (PI 482460) v1

Overview


Name	PI0027423
Type	gene
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	Ty3-gypsy retrotransposon protein
Location	chr07: 15908856 .. 15909568 (+)
RNA-Seq Expression	PI0027423
Synteny	PI0027423

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATAAAGGAGGGGCGAAAAGAATTGAGAAAGAGAGCATAGAAGCATGCCTTCCAGAAAAACGAACAACGGAGGGATTTGACCCAAAAGCATATAGGTTGATGGCAACGGCGGGTTATGACTTTACAACCCGCACTAAGCTCAAAAGCATGAAGATATTTGATGAAAGGCATGGGCTTTCTCCCACGCAAAAGAAGCTTCAAAAGCAAGGATATTTTATACCAAATTCAAGACCAGGAGTTGGGTATAAGTCTTCCGAGCCAATTCGAATAACTAATAAAGCAAAAGGAAAAGCTGCTAACACATGCCACATTACTGTTGAAGAATGCAACGATTCTAAAGAAGACGAAAAAAGGGAAAGTCAAAGAAGTTCTGTTTTTTATCGCATCACCTCTTCTACTGCATGCCTTTTAGTTTTTTAGAGGTTGAGTGTACTAATAAGGGAGGACAAAAATGAAGGATCAGCTTCTGATTCCACCCAACTTTCTACCTTTCAGAGATTAAATACAACTTCGGTTACGCGAACCTCTGCCTTCAAAAGGTTAAGTGTGTCGGTGACAAGAGACCAGAAGAAACCTCTCATATCTGTTTCAAGCAAACCTGGCTTAGTGACGAAGGACGATTGAATTCGCAGCACTGTTCCATCGAGAATGGAAAGGAAGTTGTTCGTCTCAGTAAACACAGAGGGTTCATTAAAAGTAAAACGACATGA

mRNA sequence

ATGGATAAAGGAGGGGCGAAAAGAATTGAGAAAGAGAGCATAGAAGCATGCCTTCCAGAAAAACGAACAACGGAGGGATTTGACCCAAAAGCATATAGGTTGATGGCAACGGCGGGTTATGACTTTACAACCCGCACTAAGCTCAAAAGCATGAAGATATTTGATGAAAGGCATGGGCTTTCTCCCACGCAAAAGAAGCTTCAAAAGCAAGGATATTTTATACCAAATTCAAGACCAGGAGTTGGGTATAAGTCTTCCGAGCCAATTCGAATAACTAATAAAGCAAAAGGAAAAGCTGCTAACACATGCCACATTACTGTTGAAGAATGCAACGATTCTAAAGAAGACGAAAAAAGGGAAAAGATTAAATACAACTTCGGTTACGCGAACCTCTGCCTTCAAAAGGTTAAGTGTGTCGGTGACAAGAGACCAGAAGAAACCTCTCATATCTGTTTCAAGCAAACCTGGCTTAGTGACGAAGGACGATTGAATTCGCAGCACTGTTCCATCGAGAATGGAAAGGAAGTTGTTCGTCTCAGTAAACACAGAGGGTTCATTAAAAGTAAAACGACATGA

Coding sequence (CDS)

ATGGATAAAGGAGGGGCGAAAAGAATTGAGAAAGAGAGCATAGAAGCATGCCTTCCAGAAAAACGAACAACGGAGGGATTTGACCCAAAAGCATATAGGTTGATGGCAACGGCGGGTTATGACTTTACAACCCGCACTAAGCTCAAAAGCATGAAGATATTTGATGAAAGGCATGGGCTTTCTCCCACGCAAAAGAAGCTTCAAAAGCAAGGATATTTTATACCAAATTCAAGACCAGGAGTTGGGTATAAGTCTTCCGAGCCAATTCGAATAACTAATAAAGCAAAAGGAAAAGCTGCTAACACATGCCACATTACTGTTGAAGAATGCAACGATTCTAAAGAAGACGAAAAAAGGGAAAAGATTAAATACAACTTCGGTTACGCGAACCTCTGCCTTCAAAAGGTTAAGTGTGTCGGTGACAAGAGACCAGAAGAAACCTCTCATATCTGTTTCAAGCAAACCTGGCTTAGTGACGAAGGACGATTGAATTCGCAGCACTGTTCCATCGAGAATGGAAAGGAAGTTGTTCGTCTCAGTAAACACAGAGGGTTCATTAAAAGTAAAACGACATGA

Protein sequence

MDKGGAKRIEKESIEACLPEKRTTEGFDPKAYRLMATAGYDFTTRTKLKSMKIFDERHGLSPTQKKLQKQGYFIPNSRPGVGYKSSEPIRITNKAKGKAANTCHITVEECNDSKEDEKREKIKYNFGYANLCLQKVKCVGDKRPEETSHICFKQTWLSDEGRLNSQHCSIENGKEVVRLSKHRGFIKSKTT

Homology

[Close]

BLAST of PI0027423 vs. ExPASy TrEMBL
Match: A0A5A7V4F2 (Reverse transcriptase domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold22G004870 PE=4 SV=1)

HSP 1 Score: 182.2 bits (461), Expect = 2.1e-42
Identity = 89/118 (75.42%), Postives = 101/118 (85.59%), Query Frame = 0


Query: 1   MDKGGAKRIEKESIEACLPEKRTTEGFDPKAYRLMATAGYDFTTRTKLKSMKIFDERHGL 60
           ++KG AK+IEK+ +EA LPE+RT EGFDPKAY+LMA AGYDFTTRT+LKS+KIFDER  L
Sbjct: 348 IEKGEAKKIEKKELEAYLPERRTVEGFDPKAYKLMAKAGYDFTTRTELKSVKIFDERPEL 407

Query: 61  SPTQKKLQKQGYFIPNSRPGVGYKSSEPIRITNKAKGKAANTCHITVEECNDSKEDEK 119
           SPTQKKLQKQGY IPNSR G+GY+SSEPIRIT K K K  NTCHITVEE  DSKE +K
Sbjct: 408 SPTQKKLQKQGYSIPNSRAGIGYQSSEPIRITGKGKAKVTNTCHITVEESKDSKEGKK 465

[Close]

BLAST of PI0027423 vs. ExPASy TrEMBL
Match: A0A5D3BTY1 (Ribonuclease H OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold18G00630 PE=4 SV=1)

HSP 1 Score: 182.2 bits (461), Expect = 2.1e-42
Identity = 89/118 (75.42%), Postives = 101/118 (85.59%), Query Frame = 0


Query: 1   MDKGGAKRIEKESIEACLPEKRTTEGFDPKAYRLMATAGYDFTTRTKLKSMKIFDERHGL 60
           ++KG AK+IEK+ +EA LPE+RT EGFDPKAY+LMA AGYDFTTRT+LKS+KIFDER  L
Sbjct: 348 IEKGEAKKIEKKELEAYLPERRTVEGFDPKAYKLMAKAGYDFTTRTELKSVKIFDERPEL 407

Query: 61  SPTQKKLQKQGYFIPNSRPGVGYKSSEPIRITNKAKGKAANTCHITVEECNDSKEDEK 119
           SPTQKKLQKQGY IPNSR G+GY+SSEPIRIT K K K  NTCHITVEE  DSKE +K
Sbjct: 408 SPTQKKLQKQGYSIPNSRAGIGYQSSEPIRITGKGKAKVTNTCHITVEESKDSKEGKK 465

[Close]

BLAST of PI0027423 vs. ExPASy TrEMBL
Match: A0A5A7U2W9 (Gag protease polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold355G00060 PE=4 SV=1)

HSP 1 Score: 181.4 bits (459), Expect = 3.5e-42
Identity = 88/118 (74.58%), Postives = 102/118 (86.44%), Query Frame = 0


Query: 1   MDKGGAKRIEKESIEACLPEKRTTEGFDPKAYRLMATAGYDFTTRTKLKSMKIFDERHGL 60
           ++KG AK+IEK+ +EA LPE+RT EGFDPKAY+LMA AGYDFTTRT+LKS+KIFDER  L
Sbjct: 89  IEKGEAKKIEKKDLEAYLPERRTVEGFDPKAYKLMAKAGYDFTTRTELKSVKIFDERPEL 148

Query: 61  SPTQKKLQKQGYFIPNSRPGVGYKSSEPIRITNKAKGKAANTCHITVEECNDSKEDEK 119
           SPTQKKLQKQGY IPNS+ G+GY+SSEP+RIT K K K ANTCHITVEE  DSKE +K
Sbjct: 149 SPTQKKLQKQGYSIPNSKAGIGYQSSEPVRITGKGKTKVANTCHITVEESKDSKEGKK 206

[Close]

BLAST of PI0027423 vs. ExPASy TrEMBL
Match: A0A5A7U320 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold12354G00010 PE=4 SV=1)

HSP 1 Score: 181.4 bits (459), Expect = 3.5e-42
Identity = 88/118 (74.58%), Postives = 102/118 (86.44%), Query Frame = 0


Query: 1   MDKGGAKRIEKESIEACLPEKRTTEGFDPKAYRLMATAGYDFTTRTKLKSMKIFDERHGL 60
           ++KG AK+IEK+ I+A LPE+RT EGFDPKAY+LMA AGYDFTTRT+LKS+KIFDER  L
Sbjct: 281 IEKGEAKKIEKKDIQAYLPERRTVEGFDPKAYKLMAKAGYDFTTRTELKSVKIFDERPEL 340

Query: 61  SPTQKKLQKQGYFIPNSRPGVGYKSSEPIRITNKAKGKAANTCHITVEECNDSKEDEK 119
           SPTQKKLQKQGY IPNSR G+GY+SSEP+RIT K K K ANTCHITVEE  DS+E +K
Sbjct: 341 SPTQKKLQKQGYSIPNSRAGIGYQSSEPVRITGKGKAKVANTCHITVEESKDSEEGKK 398

[Close]

BLAST of PI0027423 vs. ExPASy TrEMBL
Match: A0A5A7TZU9 (Ribonuclease H OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold498G00940 PE=4 SV=1)

HSP 1 Score: 180.6 bits (457), Expect = 6.0e-42
Identity = 87/118 (73.73%), Postives = 102/118 (86.44%), Query Frame = 0


Query: 1    MDKGGAKRIEKESIEACLPEKRTTEGFDPKAYRLMATAGYDFTTRTKLKSMKIFDERHGL 60
            ++KG AK+IEK+ ++A LPE+RT EGFDPKAY+LMA AGYDFTTRT+LKS+KIFDER  L
Sbjct: 994  IEKGEAKKIEKKDLQAYLPERRTVEGFDPKAYKLMAKAGYDFTTRTELKSVKIFDERPEL 1053

Query: 61   SPTQKKLQKQGYFIPNSRPGVGYKSSEPIRITNKAKGKAANTCHITVEECNDSKEDEK 119
            SPTQKKLQKQGY IPNSR G+GY+SSEP+RIT K K K ANTCHITVEE  DS+E +K
Sbjct: 1054 SPTQKKLQKQGYSIPNSRAGIGYQSSEPVRITGKGKAKVANTCHITVEESKDSEEGKK 1111

[Close]

BLAST of PI0027423 vs. NCBI nr
Match: TYK02262.1 (uncharacterized protein E5676_scaffold18G00630 [Cucumis melo var. makuwa])

HSP 1 Score: 182.2 bits (461), Expect = 4.3e-42
Identity = 89/118 (75.42%), Postives = 101/118 (85.59%), Query Frame = 0


Query: 1   MDKGGAKRIEKESIEACLPEKRTTEGFDPKAYRLMATAGYDFTTRTKLKSMKIFDERHGL 60
           ++KG AK+IEK+ +EA LPE+RT EGFDPKAY+LMA AGYDFTTRT+LKS+KIFDER  L
Sbjct: 348 IEKGEAKKIEKKELEAYLPERRTVEGFDPKAYKLMAKAGYDFTTRTELKSVKIFDERPEL 407

Query: 61  SPTQKKLQKQGYFIPNSRPGVGYKSSEPIRITNKAKGKAANTCHITVEECNDSKEDEK 119
           SPTQKKLQKQGY IPNSR G+GY+SSEPIRIT K K K  NTCHITVEE  DSKE +K
Sbjct: 408 SPTQKKLQKQGYSIPNSRAGIGYQSSEPIRITGKGKAKVTNTCHITVEESKDSKEGKK 465

[Close]

BLAST of PI0027423 vs. NCBI nr
Match: KAA0060609.1 (uncharacterized protein E6C27_scaffold22G004870 [Cucumis melo var. makuwa])

HSP 1 Score: 182.2 bits (461), Expect = 4.3e-42
Identity = 89/118 (75.42%), Postives = 101/118 (85.59%), Query Frame = 0


Query: 1   MDKGGAKRIEKESIEACLPEKRTTEGFDPKAYRLMATAGYDFTTRTKLKSMKIFDERHGL 60
           ++KG AK+IEK+ +EA LPE+RT EGFDPKAY+LMA AGYDFTTRT+LKS+KIFDER  L
Sbjct: 348 IEKGEAKKIEKKELEAYLPERRTVEGFDPKAYKLMAKAGYDFTTRTELKSVKIFDERPEL 407

Query: 61  SPTQKKLQKQGYFIPNSRPGVGYKSSEPIRITNKAKGKAANTCHITVEECNDSKEDEK 119
           SPTQKKLQKQGY IPNSR G+GY+SSEPIRIT K K K  NTCHITVEE  DSKE +K
Sbjct: 408 SPTQKKLQKQGYSIPNSRAGIGYQSSEPIRITGKGKAKVTNTCHITVEESKDSKEGKK 465

[Close]

BLAST of PI0027423 vs. NCBI nr
Match: KAA0048626.1 (uncharacterized protein E6C27_scaffold12354G00010 [Cucumis melo var. makuwa])

HSP 1 Score: 181.4 bits (459), Expect = 7.3e-42
Identity = 88/118 (74.58%), Postives = 102/118 (86.44%), Query Frame = 0


Query: 1   MDKGGAKRIEKESIEACLPEKRTTEGFDPKAYRLMATAGYDFTTRTKLKSMKIFDERHGL 60
           ++KG AK+IEK+ I+A LPE+RT EGFDPKAY+LMA AGYDFTTRT+LKS+KIFDER  L
Sbjct: 281 IEKGEAKKIEKKDIQAYLPERRTVEGFDPKAYKLMAKAGYDFTTRTELKSVKIFDERPEL 340

Query: 61  SPTQKKLQKQGYFIPNSRPGVGYKSSEPIRITNKAKGKAANTCHITVEECNDSKEDEK 119
           SPTQKKLQKQGY IPNSR G+GY+SSEP+RIT K K K ANTCHITVEE  DS+E +K
Sbjct: 341 SPTQKKLQKQGYSIPNSRAGIGYQSSEPVRITGKGKAKVANTCHITVEESKDSEEGKK 398

[Close]

BLAST of PI0027423 vs. NCBI nr
Match: KAA0050182.1 (gag protease polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 181.4 bits (459), Expect = 7.3e-42
Identity = 88/118 (74.58%), Postives = 102/118 (86.44%), Query Frame = 0


Query: 1   MDKGGAKRIEKESIEACLPEKRTTEGFDPKAYRLMATAGYDFTTRTKLKSMKIFDERHGL 60
           ++KG AK+IEK+ +EA LPE+RT EGFDPKAY+LMA AGYDFTTRT+LKS+KIFDER  L
Sbjct: 89  IEKGEAKKIEKKDLEAYLPERRTVEGFDPKAYKLMAKAGYDFTTRTELKSVKIFDERPEL 148

Query: 61  SPTQKKLQKQGYFIPNSRPGVGYKSSEPIRITNKAKGKAANTCHITVEECNDSKEDEK 119
           SPTQKKLQKQGY IPNS+ G+GY+SSEP+RIT K K K ANTCHITVEE  DSKE +K
Sbjct: 149 SPTQKKLQKQGYSIPNSKAGIGYQSSEPVRITGKGKTKVANTCHITVEESKDSKEGKK 206

[Close]

BLAST of PI0027423 vs. NCBI nr
Match: TYJ98225.1 (uncharacterized protein E5676_scaffold180G001270 [Cucumis melo var. makuwa])

HSP 1 Score: 180.6 bits (457), Expect = 1.2e-41
Identity = 87/118 (73.73%), Postives = 102/118 (86.44%), Query Frame = 0


Query: 1    MDKGGAKRIEKESIEACLPEKRTTEGFDPKAYRLMATAGYDFTTRTKLKSMKIFDERHGL 60
            ++KG AK+IEK+ ++A LPE+RT EGFDPKAY+LMA AGYDFTTRT+LKS+KIFDER  L
Sbjct: 972  IEKGEAKKIEKKDLQAYLPERRTVEGFDPKAYKLMAKAGYDFTTRTELKSVKIFDERPEL 1031

Query: 61   SPTQKKLQKQGYFIPNSRPGVGYKSSEPIRITNKAKGKAANTCHITVEECNDSKEDEK 119
            SPTQKKLQKQGY IPNSR G+GY+SSEP+RIT K K K ANTCHITVEE  DS+E +K
Sbjct: 1032 SPTQKKLQKQGYSIPNSRAGIGYQSSEPVRITGKGKAKVANTCHITVEESKDSEEGKK 1089

The following BLAST results are available for this feature:

BLAST of PI0027423 vs.


Match Name	E-value	Identity	Description

BLAST of PI0027423 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7V4F2	2.1e-42	75.42	Reverse transcriptase domain-containing protein OS=Cucumis melo var. makuwa OX=1...	[more]
A0A5D3BTY1	2.1e-42	75.42	Ribonuclease H OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold18G00630 ...	[more]
A0A5A7U2W9	3.5e-42	74.58	Gag protease polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffol...	[more]
A0A5A7U320	3.5e-42	74.58	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5A7TZU9	6.0e-42	73.73	Ribonuclease H OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold498G00940...	[more]

BLAST of PI0027423 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK02262.1	4.3e-42	75.42	uncharacterized protein E5676_scaffold18G00630 [Cucumis melo var. makuwa]	[more]
KAA0060609.1	4.3e-42	75.42	uncharacterized protein E6C27_scaffold22G004870 [Cucumis melo var. makuwa]	[more]
KAA0048626.1	7.3e-42	74.58	uncharacterized protein E6C27_scaffold12354G00010 [Cucumis melo var. makuwa]	[more]
KAA0050182.1	7.3e-42	74.58	gag protease polyprotein [Cucumis melo var. makuwa]	[more]
TYJ98225.1	1.2e-41	73.73	uncharacterized protein E5676_scaffold180G001270 [Cucumis melo var. makuwa]	[more]

BLAST of PI0027423 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
PI0027423.1	PI0027423.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0071897	DNA biosynthetic process
biological_process	GO:0015074	DNA integration
biological_process	GO:0006310	DNA recombination
biological_process	GO:0006508	proteolysis
biological_process	GO:0090502	RNA phosphodiester bond hydrolysis, endonucleolytic
molecular_function	GO:0003887	DNA-directed DNA polymerase activity
molecular_function	GO:0008233	peptidase activity
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0004523	RNA-DNA hybrid ribonuclease activity