PI0027376 (gene) Melon (PI 482460) v1

Overview


Name	PI0027376
Type	gene
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	PsbP domain-containing protein
Location	chr12: 1160833 .. 1163238 (-)
RNA-Seq Expression	PI0027376
Synteny	PI0027376

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGAACCACTTTGTTTATCACTAACCCATTCTCCTCCATCTTTCACCTTCAAAACCTTCCTTCTCCCCTTCTCCATCCTCACCATTTTCTCCCTAAACGGGTCTCCGCCCTCCACTCTGCCCACAACCGAAACCCCAACTCTTCTCCCGCTTTGAATCGGAGATGGGTTTTGGTTTCCGGTGTTTCTTTGCTTTCTTCGGCGGCTTTTGGGTTGCAAAACCAGTGTTTGGCTGCGGTTAAGCAAGGCCTTCTTGCTGGCAGGGTTCCTGGGTTGTCTGAACCAGATGAACAGGGTTGGCTTTTCTCATTTCCATTTCTACTTTACATTTATCAATCTTTTCGTTCCTCTAATTTCTGGGTTATCAAACACTTTTGTTCATTCTTCTCTTAACTCTATCAATTTAGTTCATGTAGTTTTAAGTTTGGAACGATTTATAGTCTTTCAATATGGTTAAGTTACGAGCATTGTTTATGAACTTTCCTGTCTTTGAACTTTTGAAAGTATATTATCGTCACTAACAGGTTTCTTAAACCTTCATATTTGAGGTCTTTAGTATATTCATCAACTTTTTTACATAAAATTGAAAGTTGATGGACGTATTAGCTACATAAATGAAAGTCTAGGGATTTATTTTAATTTTCAGTGACTTATTTGATACAGATTTAGAAGTCCGAGGACAATTTGTAGCTTAACCTTTAAAATTTGTACATAGAAGAATACAGATGCCATGTATACTTTTCGTTGCCATTTAATTGAATACTTAACATTGAATAATGAATCAATATATTCACAATGCAGGGGTTAAAATGAAATAAATGAAACAACAAGGAGTAGAATTTAAAAACAATATAAATCGAGGACTAGAGTTAGTTAGTATAACCTTTTCTTTGTTGGTCTATAGCTGAATCTCTGCAGTAAGAAAACAAACCGAGCTGATCATGTCATCTTTTCTATATCAACTCACGTAGGCCATAGCCTTTTTGTTTTGCTAGCGCAGGAATCTCTTGTGCTGAACATACAAAAATGTTAAGTTCTGGAATAAAAAATATCCAGCAACTTTTATTTTGACCATTGATTGCTTTGAACTGCTTTCCCTTTCATCTCAAGCTTAGCATATCTGGTTTCTTGTTTGTTGCCTGCTCAGACAGGTTGGAGGACATATCGTAGACCTGACGAGAAGTCCGGTGGGCATGGAGTTGGATGGAGTCCTATTATTCCTTATGCCTTTTCAGTTCCACAAGACTGGGAAGAGGTAAATGCTGCTTGATATTCCTCTTTTAAGTTTTAACCTAACTAAAGATGATGATGAAGAGCTACAAAAGAAACAAATGGTTTCTACCTCAAACAGTTTCTTCATCAGATTAGAGAAACTAATGAAACTTGATCAACTACTTAAACTAATAAGATATTAACCTGGATCGTTACGCTGGTGCTTTGAGTGGTTTTGAGTCTCCATGCCGAAGGATGACTTAATTGGTGGCCATCTTACTTAGAATTTTAAAATTGAACGAGTTTCTTGACAGTTAAAAGAAAACCAACAATTATCTTTTGGAATTTGTGTTGGGAGACATCCTTGTTGACTAGATGAGTAGAGTGATGCCTGTATATATAAACATGGTAAAGAAAGATCCAATGATATCCATTTCCAATTTATTTCTCTGCCTGGAATTGAAAATTGTCATTCTAATTGGACCATCACCATGCAAGTTAATTTCATGTTCATTTTGATTAAAGAAAGACATGCGACAATGGACATGAGACAATGTGCTTTTGTGTTGCAGGTTCCGGTGTCAATTGCTGATCTTGGTGGGACAGAGATTGATCTCAGGTTCGGAAGCTTGAAGGAAGGTCGACTGTTTGTAATTGTTGCGCCTGTTCGTCGATTTTCCGATGGTGATTTCCCTGAAACTTTATGCTTCTTTTTCAGCTTTCCATTTCAAAGAAACTTTACTGCCACCTCTCCCTCTTCTGTGTTCTGACTTTGTTATTGTTCTGTGAAGTTATCGGTGAGGACGCAACCATTGAAATGGTTGGACCTCCAGAGAAAGTAATCAATGCATTCGGACCGGAAGTGATCGGAGAAAACGTAGAAGGAAAGGTGATCAGCATGAGCGTGGCGGAGCATTCTGGAAGAACATATTATCAGTTTGAATTGGAGCCTCCTCATGTTATAATCACAGCAACAGCGGCGGGAAATCGTCTCTACCTATTCAATGTAACAGCAAATGGTAAGAGCCCCCGAAGAACACCTTGTTTATATGATGTGGGTTAAAATCATATAAGAAATCAATTGTTTTCCATCAGAACTAAAGAAAGCTTTTTTCTTGGGTTCTTATAGGCCTTCAATGGAAGAGATATTACAAAGACTTGAAAAGGATTGCGGATTCGTTTTGCATCGTGTGA

mRNA sequence

ATGGGAACCACTTTGTTTATCACTAACCCATTCTCCTCCATCTTTCACCTTCAAAACCTTCCTTCTCCCCTTCTCCATCCTCACCATTTTCTCCCTAAACGGGTCTCCGCCCTCCACTCTGCCCACAACCGAAACCCCAACTCTTCTCCCGCTTTGAATCGGAGATGGGTTTTGGTTTCCGGTGTTTCTTTGCTTTCTTCGGCGGCTTTTGGGTTGCAAAACCAGTGTTTGGCTGCGGTTAAGCAAGGCCTTCTTGCTGGCAGGGTTCCTGGGTTGTCTGAACCAGATGAACAGGGTTGGAGGACATATCGTAGACCTGACGAGAAGTCCGGTGGGCATGGAGTTGGATGGAGTCCTATTATTCCTTATGCCTTTTCAGTTCCACAAGACTGGGAAGAGGTTCCGGTGTCAATTGCTGATCTTGGTGGGACAGAGATTGATCTCAGGTTCGGAAGCTTGAAGGAAGGTCGACTGTTTGTAATTGTTGCGCCTGTTCGTCGATTTTCCGATGTTATCGGTGAGGACGCAACCATTGAAATGGTTGGACCTCCAGAGAAAGTAATCAATGCATTCGGACCGGAAGTGATCGGAGAAAACGTAGAAGGAAAGGTGATCAGCATGAGCGTGGCGGAGCATTCTGGAAGAACATATTATCAGTTTGAATTGGAGCCTCCTCATGTTATAATCACAGCAACAGCGGCGGGAAATCGTCTCTACCTATTCAATGTAACAGCAAATGGCCTTCAATGGAAGAGATATTACAAAGACTTGAAAAGGATTGCGGATTCGTTTTGCATCGTGTGA

Coding sequence (CDS)

ATGGGAACCACTTTGTTTATCACTAACCCATTCTCCTCCATCTTTCACCTTCAAAACCTTCCTTCTCCCCTTCTCCATCCTCACCATTTTCTCCCTAAACGGGTCTCCGCCCTCCACTCTGCCCACAACCGAAACCCCAACTCTTCTCCCGCTTTGAATCGGAGATGGGTTTTGGTTTCCGGTGTTTCTTTGCTTTCTTCGGCGGCTTTTGGGTTGCAAAACCAGTGTTTGGCTGCGGTTAAGCAAGGCCTTCTTGCTGGCAGGGTTCCTGGGTTGTCTGAACCAGATGAACAGGGTTGGAGGACATATCGTAGACCTGACGAGAAGTCCGGTGGGCATGGAGTTGGATGGAGTCCTATTATTCCTTATGCCTTTTCAGTTCCACAAGACTGGGAAGAGGTTCCGGTGTCAATTGCTGATCTTGGTGGGACAGAGATTGATCTCAGGTTCGGAAGCTTGAAGGAAGGTCGACTGTTTGTAATTGTTGCGCCTGTTCGTCGATTTTCCGATGTTATCGGTGAGGACGCAACCATTGAAATGGTTGGACCTCCAGAGAAAGTAATCAATGCATTCGGACCGGAAGTGATCGGAGAAAACGTAGAAGGAAAGGTGATCAGCATGAGCGTGGCGGAGCATTCTGGAAGAACATATTATCAGTTTGAATTGGAGCCTCCTCATGTTATAATCACAGCAACAGCGGCGGGAAATCGTCTCTACCTATTCAATGTAACAGCAAATGGCCTTCAATGGAAGAGATATTACAAAGACTTGAAAAGGATTGCGGATTCGTTTTGCATCGTGTGA

Protein sequence

MGTTLFITNPFSSIFHLQNLPSPLLHPHHFLPKRVSALHSAHNRNPNSSPALNRRWVLVSGVSLLSSAAFGLQNQCLAAVKQGLLAGRVPGLSEPDEQGWRTYRRPDEKSGGHGVGWSPIIPYAFSVPQDWEEVPVSIADLGGTEIDLRFGSLKEGRLFVIVAPVRRFSDVIGEDATIEMVGPPEKVINAFGPEVIGENVEGKVISMSVAEHSGRTYYQFELEPPHVIITATAAGNRLYLFNVTANGLQWKRYYKDLKRIADSFCIV

Homology

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BLAST of PI0027376 vs. ExPASy Swiss-Prot
Match: O49292 (PsbP domain-containing protein 4, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PPD4 PE=1 SV=2)

HSP 1 Score: 353.2 bits (905), Expect = 2.6e-96
Identity = 177/245 (72.24%), Postives = 199/245 (81.22%), Query Frame = 0


Query: 33  KRVSALHSAHNRNPNSSP----------ALNRRWVLVSGVSLLSSAAFGLQNQCLAAVKQ 92
           K++SA   +++  P +SP           L+RR V+ SG+ + S+ A     + LA VKQ
Sbjct: 17  KKISAHQRSNSEIPKTSPGGCEDEWCARVLSRRSVMASGL-VSSTTALAFPREGLAVVKQ 76

Query: 93  GLLAGRVPGLSEPDEQGWRTYRRPDEKSGGHGVGWSPIIPYAFSVPQDWEEVPVSIADLG 152
           GLLAGRVPGLSEPDE+GWRTYRRPDEKSGGHGVGWSPIIPYAFSVPQDW EVPVSIADLG
Sbjct: 77  GLLAGRVPGLSEPDEEGWRTYRRPDEKSGGHGVGWSPIIPYAFSVPQDWNEVPVSIADLG 136

Query: 153 GTEIDLRFGSLKEGRLFVIVAPVRRFSDVIGEDATIEMVGPPEKVINAFGPEVIGENVEG 212
           GTEIDLRF S KEGRL VIVAPV RF+D +G+D  IE +G P KVINAFGPEVIGENVEG
Sbjct: 137 GTEIDLRFASPKEGRLSVIVAPVLRFADNLGDDVKIENIGQPAKVINAFGPEVIGENVEG 196

Query: 213 KVISMSVAEHSGRTYYQFELEPPHVIITATAAGNRLYLFNVTANGLQWKRYYKDLKRIAD 268
           KV+S +VAEH GR YYQFELEPPHV+ITATAAGNRLYLF+VT NGLQWKR+YKDLKRIA 
Sbjct: 197 KVLSSNVAEHDGRLYYQFELEPPHVLITATAAGNRLYLFSVTGNGLQWKRHYKDLKRIAS 256

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BLAST of PI0027376 vs. ExPASy Swiss-Prot
Match: Q9LXX5 (PsbP domain-containing protein 6, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PPD6 PE=1 SV=1)

HSP 1 Score: 85.9 bits (211), Expect = 7.6e-16
Identity = 51/158 (32.28%), Postives = 89/158 (56.33%), Query Frame = 0


Query: 122 PYAFSVPQDWEEVPVSIADLGG--------TEIDLRFGSLKEGRLFVIVAPVRRFSDVIG 181
           PY F +P +W+++ ++    G           I+++F + K+G++ V+ +P+ R ++   
Sbjct: 105 PYQFVLPPNWKQLRIANILSGNYCQPKCAEPWIEVKFENEKQGKVQVVASPLIRLTN--K 164

Query: 182 EDATIEMVGPPEKVINAFGPEVIGENVEG-KVISMSVAEHSGRTYYQFELEPP------H 241
            +ATIE +G PEKVI + GP V G + +  +++  S+ +   +TYY++ LE P      H
Sbjct: 165 PNATIEDLGEPEKVIASLGPFVTGNSYDSDELLKTSIEKIGDQTYYKYVLETPFALTGSH 224

Query: 242 VIITATAAGNRLYLFNVTANGLQWKRYYKDLKRIADSF 265
            +  ATA G+ + LF V+A   QW+   K L+ I DSF
Sbjct: 225 NLAKATAKGSTVVLFVVSATEKQWQSSQKTLEAILDSF 260

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BLAST of PI0027376 vs. ExPASy TrEMBL
Match: A0A5A7T2U1 (PsbP domain-containing protein 4 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1784G00200 PE=4 SV=1)

HSP 1 Score: 513.8 bits (1322), Expect = 4.2e-142
Identity = 254/268 (94.78%), Postives = 260/268 (97.01%), Query Frame = 0


Query: 1   MGTT-LFITNPFSSIFHLQNLPSPLLHPHHFLPKRVSALHSAHNRNPNSSPALNRRWVLV 60
           MGTT LFITNPFSSIFH QNLPSPLLHPH FLPKRVSALH AHN+NP SSPAL RRWVLV
Sbjct: 1   MGTTALFITNPFSSIFHQQNLPSPLLHPHRFLPKRVSALHRAHNQNPISSPALIRRWVLV 60

Query: 61  SGVSLLSSAAFGLQNQCLAAVKQGLLAGRVPGLSEPDEQGWRTYRRPDEKSGGHGVGWSP 120
           SGVSLLSSAA GLQN+CLAAVKQGLLAGR+PGLSEPDEQGWRTYRRPDEKSGGHGVGWSP
Sbjct: 61  SGVSLLSSAALGLQNECLAAVKQGLLAGRIPGLSEPDEQGWRTYRRPDEKSGGHGVGWSP 120

Query: 121 IIPYAFSVPQDWEEVPVSIADLGGTEIDLRFGSLKEGRLFVIVAPVRRFSDVIGEDATIE 180
           IIPYAFSVPQDWEEVPVSIADLGGTEIDLRFGSLKEGRLFVIVAPVRRFSDVIGEDATIE
Sbjct: 121 IIPYAFSVPQDWEEVPVSIADLGGTEIDLRFGSLKEGRLFVIVAPVRRFSDVIGEDATIE 180

Query: 181 MVGPPEKVINAFGPEVIGENVEGKVISMSVAEHSGRTYYQFELEPPHVIITATAAGNRLY 240
           MVGPPEKVINAFGPEVIGENVEGKVISMSVAE+SGRTYYQFELEPPHVIITATAAGNRLY
Sbjct: 181 MVGPPEKVINAFGPEVIGENVEGKVISMSVAEYSGRTYYQFELEPPHVIITATAAGNRLY 240

Query: 241 LFNVTANGLQWKRYYKDLKRIADSFCIV 268
           LFNVTANGLQWKR+YKDLKRIADSF +V
Sbjct: 241 LFNVTANGLQWKRHYKDLKRIADSFRVV 268

[Close]

BLAST of PI0027376 vs. ExPASy TrEMBL
Match: A0A1S3CEV2 (psbP domain-containing protein 4, chloroplastic isoform X1 OS=Cucumis melo OX=3656 GN=LOC103500071 PE=4 SV=1)

HSP 1 Score: 513.8 bits (1322), Expect = 4.2e-142
Identity = 254/268 (94.78%), Postives = 260/268 (97.01%), Query Frame = 0


Query: 1   MGTT-LFITNPFSSIFHLQNLPSPLLHPHHFLPKRVSALHSAHNRNPNSSPALNRRWVLV 60
           MGTT LFITNPFSSIFH QNLPSPLLHPH FLPKRVSALH AHN+NP SSPAL RRWVLV
Sbjct: 1   MGTTALFITNPFSSIFHQQNLPSPLLHPHRFLPKRVSALHCAHNQNPISSPALIRRWVLV 60

Query: 61  SGVSLLSSAAFGLQNQCLAAVKQGLLAGRVPGLSEPDEQGWRTYRRPDEKSGGHGVGWSP 120
           SGVSLLSSAA GLQN+CLAAVKQGLLAGR+PGLSEPDEQGWRTYRRPDEKSGGHGVGWSP
Sbjct: 61  SGVSLLSSAALGLQNECLAAVKQGLLAGRIPGLSEPDEQGWRTYRRPDEKSGGHGVGWSP 120

Query: 121 IIPYAFSVPQDWEEVPVSIADLGGTEIDLRFGSLKEGRLFVIVAPVRRFSDVIGEDATIE 180
           IIPYAFSVPQDWEEVPVSIADLGGTEIDLRFGSLKEGRLFVIVAPVRRFSDVIGEDATIE
Sbjct: 121 IIPYAFSVPQDWEEVPVSIADLGGTEIDLRFGSLKEGRLFVIVAPVRRFSDVIGEDATIE 180

Query: 181 MVGPPEKVINAFGPEVIGENVEGKVISMSVAEHSGRTYYQFELEPPHVIITATAAGNRLY 240
           MVGPPEKVINAFGPEVIGENVEGKVISMSVAE+SGRTYYQFELEPPHVIITATAAGNRLY
Sbjct: 181 MVGPPEKVINAFGPEVIGENVEGKVISMSVAEYSGRTYYQFELEPPHVIITATAAGNRLY 240

Query: 241 LFNVTANGLQWKRYYKDLKRIADSFCIV 268
           LFNVTANGLQWKR+YKDLKRIADSF +V
Sbjct: 241 LFNVTANGLQWKRHYKDLKRIADSFRVV 268

[Close]

BLAST of PI0027376 vs. ExPASy TrEMBL
Match: A0A0A0K501 (PsbP domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G322590 PE=4 SV=1)

HSP 1 Score: 508.1 bits (1307), Expect = 2.3e-140
Identity = 249/267 (93.26%), Postives = 255/267 (95.51%), Query Frame = 0


Query: 1   MGTTLFITNPFSSIFHLQNLPSPLLHPHHFLPKRVSALHSAHNRNPNSSPALNRRWVLVS 60
           MGTTLFITNPFSSIFH Q LPSP L PHHFLPKRVSA+H AHN+NP SS ALNRRW LVS
Sbjct: 1   MGTTLFITNPFSSIFHHQYLPSPHLPPHHFLPKRVSAVHGAHNQNPISSTALNRRWALVS 60

Query: 61  GVSLLSSAAFGLQNQCLAAVKQGLLAGRVPGLSEPDEQGWRTYRRPDEKSGGHGVGWSPI 120
           GVSLLSSAA GLQN CLAAVKQGLLAGR+PGLSEPDEQGWRTYRRPDEKSGGHGVGWSPI
Sbjct: 61  GVSLLSSAALGLQNDCLAAVKQGLLAGRIPGLSEPDEQGWRTYRRPDEKSGGHGVGWSPI 120

Query: 121 IPYAFSVPQDWEEVPVSIADLGGTEIDLRFGSLKEGRLFVIVAPVRRFSDVIGEDATIEM 180
           IPYAFSVPQDWEEVPVSIADLGGTEIDLRFGSLKEGR+FV+VAPVRRFSDVIGEDATIEM
Sbjct: 121 IPYAFSVPQDWEEVPVSIADLGGTEIDLRFGSLKEGRVFVVVAPVRRFSDVIGEDATIEM 180

Query: 181 VGPPEKVINAFGPEVIGENVEGKVISMSVAEHSGRTYYQFELEPPHVIITATAAGNRLYL 240
           VGPPEKVINAFGPEVIGENVEGKVISMSVAEHSGRTYYQFELEPPHVIITATAAGNRLYL
Sbjct: 181 VGPPEKVINAFGPEVIGENVEGKVISMSVAEHSGRTYYQFELEPPHVIITATAAGNRLYL 240

Query: 241 FNVTANGLQWKRYYKDLKRIADSFCIV 268
           FNVTANGLQWKR+Y DLKRIADSF IV
Sbjct: 241 FNVTANGLQWKRHYNDLKRIADSFRIV 267

[Close]

BLAST of PI0027376 vs. ExPASy TrEMBL
Match: A0A6J1DKA3 (psbP domain-containing protein 4, chloroplastic OS=Momordica charantia OX=3673 GN=LOC111021699 PE=4 SV=1)

HSP 1 Score: 430.3 bits (1105), Expect = 6.1e-117
Identity = 214/267 (80.15%), Postives = 229/267 (85.77%), Query Frame = 0


Query: 1   MGTTLFITNPFSSIFHLQNLPSPLLHPHHFLPKRVSALHSAHNRNPNSSPALNRRWVLVS 60
           MGT+LF +  FS  FH   LPSP+LHP         ++  A   N      LNRR +L S
Sbjct: 1   MGTSLFTSYRFSCNFHHPKLPSPILHP--------QSISVADGENQRPLGDLNRRSILAS 60

Query: 61  GVSLLSSAAFGLQNQCLAAVKQGLLAGRVPGLSEPDEQGWRTYRRPDEKSGGHGVGWSPI 120
           G+SLLS+A  GL + CLAAVKQGLLAGR+PGLSEPDEQGWRTYRRPDEKSGGHGVGWSPI
Sbjct: 61  GISLLSTAPLGLHDHCLAAVKQGLLAGRIPGLSEPDEQGWRTYRRPDEKSGGHGVGWSPI 120

Query: 121 IPYAFSVPQDWEEVPVSIADLGGTEIDLRFGSLKEGRLFVIVAPVRRFSDVIGEDATIEM 180
           IPY FSVPQDWEEVPVSIADLGGTEIDLRFGS KEGRLFVIVAPVRRFSDVIGEDATIEM
Sbjct: 121 IPYVFSVPQDWEEVPVSIADLGGTEIDLRFGSSKEGRLFVIVAPVRRFSDVIGEDATIEM 180

Query: 181 VGPPEKVINAFGPEVIGENVEGKVISMSVAEHSGRTYYQFELEPPHVIITATAAGNRLYL 240
           VGPPEKVINAFGPEVIGENVEGKVI+M+VAEHSGRTYYQFELEPPHV+ITATAAGNRLYL
Sbjct: 181 VGPPEKVINAFGPEVIGENVEGKVINMNVAEHSGRTYYQFELEPPHVLITATAAGNRLYL 240

Query: 241 FNVTANGLQWKRYYKDLKRIADSFCIV 268
           FNVTANGLQWKR+Y DLKRIADSF +V
Sbjct: 241 FNVTANGLQWKRHYGDLKRIADSFRVV 259

[Close]

BLAST of PI0027376 vs. ExPASy TrEMBL
Match: A0A6J1IFH3 (psbP domain-containing protein 4, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111473925 PE=4 SV=1)

HSP 1 Score: 421.4 bits (1082), Expect = 2.8e-114
Identity = 209/267 (78.28%), Postives = 229/267 (85.77%), Query Frame = 0


Query: 1   MGTTLFITNPFSSIFHLQNLPSPLLHPHHFLPKRVSALHSAHNRNPNSSPALNRRWVLVS 60
           MG+T+F T PFS  FH    PS +L            + +      N SP LNRR VL+S
Sbjct: 1   MGSTMFATVPFSCNFHQSKPPSQILQ---------KGVPAVGGEKENRSPILNRRSVLLS 60

Query: 61  GVSLLSSAAFGLQNQCLAAVKQGLLAGRVPGLSEPDEQGWRTYRRPDEKSGGHGVGWSPI 120
           GVSL+SSA  GLQ++CLAAVKQGLLAGR+PGLSEPDEQGWRTYRRPDEKSGGHGVGWSPI
Sbjct: 61  GVSLVSSAGLGLQSECLAAVKQGLLAGRIPGLSEPDEQGWRTYRRPDEKSGGHGVGWSPI 120

Query: 121 IPYAFSVPQDWEEVPVSIADLGGTEIDLRFGSLKEGRLFVIVAPVRRFSDVIGEDATIEM 180
           IPYAFSVPQDWEEVPVSIADLGGTEIDLRF S KEGRLFVIVAPV+RFSDVIG+DATIEM
Sbjct: 121 IPYAFSVPQDWEEVPVSIADLGGTEIDLRFKSSKEGRLFVIVAPVQRFSDVIGDDATIEM 180

Query: 181 VGPPEKVINAFGPEVIGENVEGKVISMSVAEHSGRTYYQFELEPPHVIITATAAGNRLYL 240
           VGPPEKVI+AFGPEVIGENVEGKV++MSVAEH+GRTYYQFELEPPHV+ITATAAGNRLYL
Sbjct: 181 VGPPEKVISAFGPEVIGENVEGKVMNMSVAEHNGRTYYQFELEPPHVLITATAAGNRLYL 240

Query: 241 FNVTANGLQWKRYYKDLKRIADSFCIV 268
           F+VT NGLQWKR+Y DLKRIADSF +V
Sbjct: 241 FSVTGNGLQWKRHYSDLKRIADSFRVV 258

[Close]

BLAST of PI0027376 vs. NCBI nr
Match: XP_008461486.1 (PREDICTED: psbP domain-containing protein 4, chloroplastic isoform X1 [Cucumis melo])

HSP 1 Score: 513.8 bits (1322), Expect = 8.6e-142
Identity = 254/268 (94.78%), Postives = 260/268 (97.01%), Query Frame = 0


Query: 1   MGTT-LFITNPFSSIFHLQNLPSPLLHPHHFLPKRVSALHSAHNRNPNSSPALNRRWVLV 60
           MGTT LFITNPFSSIFH QNLPSPLLHPH FLPKRVSALH AHN+NP SSPAL RRWVLV
Sbjct: 1   MGTTALFITNPFSSIFHQQNLPSPLLHPHRFLPKRVSALHCAHNQNPISSPALIRRWVLV 60

Query: 61  SGVSLLSSAAFGLQNQCLAAVKQGLLAGRVPGLSEPDEQGWRTYRRPDEKSGGHGVGWSP 120
           SGVSLLSSAA GLQN+CLAAVKQGLLAGR+PGLSEPDEQGWRTYRRPDEKSGGHGVGWSP
Sbjct: 61  SGVSLLSSAALGLQNECLAAVKQGLLAGRIPGLSEPDEQGWRTYRRPDEKSGGHGVGWSP 120

Query: 121 IIPYAFSVPQDWEEVPVSIADLGGTEIDLRFGSLKEGRLFVIVAPVRRFSDVIGEDATIE 180
           IIPYAFSVPQDWEEVPVSIADLGGTEIDLRFGSLKEGRLFVIVAPVRRFSDVIGEDATIE
Sbjct: 121 IIPYAFSVPQDWEEVPVSIADLGGTEIDLRFGSLKEGRLFVIVAPVRRFSDVIGEDATIE 180

Query: 181 MVGPPEKVINAFGPEVIGENVEGKVISMSVAEHSGRTYYQFELEPPHVIITATAAGNRLY 240
           MVGPPEKVINAFGPEVIGENVEGKVISMSVAE+SGRTYYQFELEPPHVIITATAAGNRLY
Sbjct: 181 MVGPPEKVINAFGPEVIGENVEGKVISMSVAEYSGRTYYQFELEPPHVIITATAAGNRLY 240

Query: 241 LFNVTANGLQWKRYYKDLKRIADSFCIV 268
           LFNVTANGLQWKR+YKDLKRIADSF +V
Sbjct: 241 LFNVTANGLQWKRHYKDLKRIADSFRVV 268

[Close]

BLAST of PI0027376 vs. NCBI nr
Match: KAA0037784.1 (psbP domain-containing protein 4 [Cucumis melo var. makuwa] >TYK27307.1 psbP domain-containing protein 4 [Cucumis melo var. makuwa])

HSP 1 Score: 513.8 bits (1322), Expect = 8.6e-142
Identity = 254/268 (94.78%), Postives = 260/268 (97.01%), Query Frame = 0


Query: 1   MGTT-LFITNPFSSIFHLQNLPSPLLHPHHFLPKRVSALHSAHNRNPNSSPALNRRWVLV 60
           MGTT LFITNPFSSIFH QNLPSPLLHPH FLPKRVSALH AHN+NP SSPAL RRWVLV
Sbjct: 1   MGTTALFITNPFSSIFHQQNLPSPLLHPHRFLPKRVSALHRAHNQNPISSPALIRRWVLV 60

Query: 61  SGVSLLSSAAFGLQNQCLAAVKQGLLAGRVPGLSEPDEQGWRTYRRPDEKSGGHGVGWSP 120
           SGVSLLSSAA GLQN+CLAAVKQGLLAGR+PGLSEPDEQGWRTYRRPDEKSGGHGVGWSP
Sbjct: 61  SGVSLLSSAALGLQNECLAAVKQGLLAGRIPGLSEPDEQGWRTYRRPDEKSGGHGVGWSP 120

Query: 121 IIPYAFSVPQDWEEVPVSIADLGGTEIDLRFGSLKEGRLFVIVAPVRRFSDVIGEDATIE 180
           IIPYAFSVPQDWEEVPVSIADLGGTEIDLRFGSLKEGRLFVIVAPVRRFSDVIGEDATIE
Sbjct: 121 IIPYAFSVPQDWEEVPVSIADLGGTEIDLRFGSLKEGRLFVIVAPVRRFSDVIGEDATIE 180

Query: 181 MVGPPEKVINAFGPEVIGENVEGKVISMSVAEHSGRTYYQFELEPPHVIITATAAGNRLY 240
           MVGPPEKVINAFGPEVIGENVEGKVISMSVAE+SGRTYYQFELEPPHVIITATAAGNRLY
Sbjct: 181 MVGPPEKVINAFGPEVIGENVEGKVISMSVAEYSGRTYYQFELEPPHVIITATAAGNRLY 240

Query: 241 LFNVTANGLQWKRYYKDLKRIADSFCIV 268
           LFNVTANGLQWKR+YKDLKRIADSF +V
Sbjct: 241 LFNVTANGLQWKRHYKDLKRIADSFRVV 268

[Close]

BLAST of PI0027376 vs. NCBI nr
Match: XP_004139653.1 (psbP domain-containing protein 4, chloroplastic isoform X1 [Cucumis sativus] >KGN44513.1 hypothetical protein Csa_015810 [Cucumis sativus])

HSP 1 Score: 508.1 bits (1307), Expect = 4.7e-140
Identity = 249/267 (93.26%), Postives = 255/267 (95.51%), Query Frame = 0


Query: 1   MGTTLFITNPFSSIFHLQNLPSPLLHPHHFLPKRVSALHSAHNRNPNSSPALNRRWVLVS 60
           MGTTLFITNPFSSIFH Q LPSP L PHHFLPKRVSA+H AHN+NP SS ALNRRW LVS
Sbjct: 1   MGTTLFITNPFSSIFHHQYLPSPHLPPHHFLPKRVSAVHGAHNQNPISSTALNRRWALVS 60

Query: 61  GVSLLSSAAFGLQNQCLAAVKQGLLAGRVPGLSEPDEQGWRTYRRPDEKSGGHGVGWSPI 120
           GVSLLSSAA GLQN CLAAVKQGLLAGR+PGLSEPDEQGWRTYRRPDEKSGGHGVGWSPI
Sbjct: 61  GVSLLSSAALGLQNDCLAAVKQGLLAGRIPGLSEPDEQGWRTYRRPDEKSGGHGVGWSPI 120

Query: 121 IPYAFSVPQDWEEVPVSIADLGGTEIDLRFGSLKEGRLFVIVAPVRRFSDVIGEDATIEM 180
           IPYAFSVPQDWEEVPVSIADLGGTEIDLRFGSLKEGR+FV+VAPVRRFSDVIGEDATIEM
Sbjct: 121 IPYAFSVPQDWEEVPVSIADLGGTEIDLRFGSLKEGRVFVVVAPVRRFSDVIGEDATIEM 180

Query: 181 VGPPEKVINAFGPEVIGENVEGKVISMSVAEHSGRTYYQFELEPPHVIITATAAGNRLYL 240
           VGPPEKVINAFGPEVIGENVEGKVISMSVAEHSGRTYYQFELEPPHVIITATAAGNRLYL
Sbjct: 181 VGPPEKVINAFGPEVIGENVEGKVISMSVAEHSGRTYYQFELEPPHVIITATAAGNRLYL 240

Query: 241 FNVTANGLQWKRYYKDLKRIADSFCIV 268
           FNVTANGLQWKR+Y DLKRIADSF IV
Sbjct: 241 FNVTANGLQWKRHYNDLKRIADSFRIV 267

[Close]

BLAST of PI0027376 vs. NCBI nr
Match: XP_038896887.1 (psbP domain-containing protein 4, chloroplastic [Benincasa hispida])

HSP 1 Score: 485.0 bits (1247), Expect = 4.3e-133
Identity = 238/267 (89.14%), Postives = 244/267 (91.39%), Query Frame = 0


Query: 1   MGTTLFITNPFSSIFHLQNLPSPLLHPHHFLPKRVSALHSAHNRNPNSSPALNRRWVLVS 60
           MGTTLF  NPF S  H  NLPSPLLHP+ FLPK VSA+H     NPN SP LNRRWVLVS
Sbjct: 1   MGTTLFTINPFFSFCHQPNLPSPLLHPNSFLPKPVSAVHGGQQENPNLSPTLNRRWVLVS 60

Query: 61  GVSLLSSAAFGLQNQCLAAVKQGLLAGRVPGLSEPDEQGWRTYRRPDEKSGGHGVGWSPI 120
           GVSLLSSAA GL   CLAAVKQGLLAGR+PGLSEPDEQGWRTYRRPDEKSGGHGVGWSPI
Sbjct: 61  GVSLLSSAALGLPKDCLAAVKQGLLAGRIPGLSEPDEQGWRTYRRPDEKSGGHGVGWSPI 120

Query: 121 IPYAFSVPQDWEEVPVSIADLGGTEIDLRFGSLKEGRLFVIVAPVRRFSDVIGEDATIEM 180
           IPYAFSVPQDWEEVPVSIADLGGTEIDLRFGS KEGRLFVIVAPVRRFSDVIGEDATIEM
Sbjct: 121 IPYAFSVPQDWEEVPVSIADLGGTEIDLRFGSSKEGRLFVIVAPVRRFSDVIGEDATIEM 180

Query: 181 VGPPEKVINAFGPEVIGENVEGKVISMSVAEHSGRTYYQFELEPPHVIITATAAGNRLYL 240
           VGPPEKVINAFGPEVIGENVEGKVISMSVAEHSGRTYYQFELEPPHVIITATAAGNRLYL
Sbjct: 181 VGPPEKVINAFGPEVIGENVEGKVISMSVAEHSGRTYYQFELEPPHVIITATAAGNRLYL 240

Query: 241 FNVTANGLQWKRYYKDLKRIADSFCIV 268
           F+VTANGLQWKR+Y DLKRIADSF +V
Sbjct: 241 FSVTANGLQWKRHYSDLKRIADSFRVV 267

[Close]

BLAST of PI0027376 vs. NCBI nr
Match: XP_022154428.1 (psbP domain-containing protein 4, chloroplastic [Momordica charantia])

HSP 1 Score: 430.3 bits (1105), Expect = 1.3e-116
Identity = 214/267 (80.15%), Postives = 229/267 (85.77%), Query Frame = 0


Query: 1   MGTTLFITNPFSSIFHLQNLPSPLLHPHHFLPKRVSALHSAHNRNPNSSPALNRRWVLVS 60
           MGT+LF +  FS  FH   LPSP+LHP         ++  A   N      LNRR +L S
Sbjct: 1   MGTSLFTSYRFSCNFHHPKLPSPILHP--------QSISVADGENQRPLGDLNRRSILAS 60

Query: 61  GVSLLSSAAFGLQNQCLAAVKQGLLAGRVPGLSEPDEQGWRTYRRPDEKSGGHGVGWSPI 120
           G+SLLS+A  GL + CLAAVKQGLLAGR+PGLSEPDEQGWRTYRRPDEKSGGHGVGWSPI
Sbjct: 61  GISLLSTAPLGLHDHCLAAVKQGLLAGRIPGLSEPDEQGWRTYRRPDEKSGGHGVGWSPI 120

Query: 121 IPYAFSVPQDWEEVPVSIADLGGTEIDLRFGSLKEGRLFVIVAPVRRFSDVIGEDATIEM 180
           IPY FSVPQDWEEVPVSIADLGGTEIDLRFGS KEGRLFVIVAPVRRFSDVIGEDATIEM
Sbjct: 121 IPYVFSVPQDWEEVPVSIADLGGTEIDLRFGSSKEGRLFVIVAPVRRFSDVIGEDATIEM 180

Query: 181 VGPPEKVINAFGPEVIGENVEGKVISMSVAEHSGRTYYQFELEPPHVIITATAAGNRLYL 240
           VGPPEKVINAFGPEVIGENVEGKVI+M+VAEHSGRTYYQFELEPPHV+ITATAAGNRLYL
Sbjct: 181 VGPPEKVINAFGPEVIGENVEGKVINMNVAEHSGRTYYQFELEPPHVLITATAAGNRLYL 240

Query: 241 FNVTANGLQWKRYYKDLKRIADSFCIV 268
           FNVTANGLQWKR+Y DLKRIADSF +V
Sbjct: 241 FNVTANGLQWKRHYGDLKRIADSFRVV 259

[Close]

BLAST of PI0027376 vs. TAIR 10
Match: AT1G77090.1 (Mog1/PsbP/DUF1795-like photosystem II reaction center PsbP family protein )

HSP 1 Score: 353.2 bits (905), Expect = 1.8e-97
Identity = 177/245 (72.24%), Postives = 199/245 (81.22%), Query Frame = 0


Query: 33  KRVSALHSAHNRNPNSSP----------ALNRRWVLVSGVSLLSSAAFGLQNQCLAAVKQ 92
           K++SA   +++  P +SP           L+RR V+ SG+ + S+ A     + LA VKQ
Sbjct: 17  KKISAHQRSNSEIPKTSPGGCEDEWCARVLSRRSVMASGL-VSSTTALAFPREGLAVVKQ 76

Query: 93  GLLAGRVPGLSEPDEQGWRTYRRPDEKSGGHGVGWSPIIPYAFSVPQDWEEVPVSIADLG 152
           GLLAGRVPGLSEPDE+GWRTYRRPDEKSGGHGVGWSPIIPYAFSVPQDW EVPVSIADLG
Sbjct: 77  GLLAGRVPGLSEPDEEGWRTYRRPDEKSGGHGVGWSPIIPYAFSVPQDWNEVPVSIADLG 136

Query: 153 GTEIDLRFGSLKEGRLFVIVAPVRRFSDVIGEDATIEMVGPPEKVINAFGPEVIGENVEG 212
           GTEIDLRF S KEGRL VIVAPV RF+D +G+D  IE +G P KVINAFGPEVIGENVEG
Sbjct: 137 GTEIDLRFASPKEGRLSVIVAPVLRFADNLGDDVKIENIGQPAKVINAFGPEVIGENVEG 196

Query: 213 KVISMSVAEHSGRTYYQFELEPPHVIITATAAGNRLYLFNVTANGLQWKRYYKDLKRIAD 268
           KV+S +VAEH GR YYQFELEPPHV+ITATAAGNRLYLF+VT NGLQWKR+YKDLKRIA 
Sbjct: 197 KVLSSNVAEHDGRLYYQFELEPPHVLITATAAGNRLYLFSVTGNGLQWKRHYKDLKRIAS 256

[Close]

BLAST of PI0027376 vs. TAIR 10
Match: AT3G56650.1 (Mog1/PsbP/DUF1795-like photosystem II reaction center PsbP family protein )

HSP 1 Score: 85.9 bits (211), Expect = 5.4e-17
Identity = 51/158 (32.28%), Postives = 89/158 (56.33%), Query Frame = 0


Query: 122 PYAFSVPQDWEEVPVSIADLGG--------TEIDLRFGSLKEGRLFVIVAPVRRFSDVIG 181
           PY F +P +W+++ ++    G           I+++F + K+G++ V+ +P+ R ++   
Sbjct: 105 PYQFVLPPNWKQLRIANILSGNYCQPKCAEPWIEVKFENEKQGKVQVVASPLIRLTN--K 164

Query: 182 EDATIEMVGPPEKVINAFGPEVIGENVEG-KVISMSVAEHSGRTYYQFELEPP------H 241
            +ATIE +G PEKVI + GP V G + +  +++  S+ +   +TYY++ LE P      H
Sbjct: 165 PNATIEDLGEPEKVIASLGPFVTGNSYDSDELLKTSIEKIGDQTYYKYVLETPFALTGSH 224

Query: 242 VIITATAAGNRLYLFNVTANGLQWKRYYKDLKRIADSF 265
            +  ATA G+ + LF V+A   QW+   K L+ I DSF
Sbjct: 225 NLAKATAKGSTVVLFVVSATEKQWQSSQKTLEAILDSF 260

The following BLAST results are available for this feature:

BLAST of PI0027376 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O49292	2.6e-96	72.24	PsbP domain-containing protein 4, chloroplastic OS=Arabidopsis thaliana OX=3702 ...	[more]
Q9LXX5	7.6e-16	32.28	PsbP domain-containing protein 6, chloroplastic OS=Arabidopsis thaliana OX=3702 ...	[more]

BLAST of PI0027376 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7T2U1	4.2e-142	94.78	PsbP domain-containing protein 4 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676...	[more]
A0A1S3CEV2	4.2e-142	94.78	psbP domain-containing protein 4, chloroplastic isoform X1 OS=Cucumis melo OX=36...	[more]
A0A0A0K501	2.3e-140	93.26	PsbP domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G322590 PE=4 S...	[more]
A0A6J1DKA3	6.1e-117	80.15	psbP domain-containing protein 4, chloroplastic OS=Momordica charantia OX=3673 G...	[more]
A0A6J1IFH3	2.8e-114	78.28	psbP domain-containing protein 4, chloroplastic OS=Cucurbita maxima OX=3661 GN=L...	[more]

BLAST of PI0027376 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008461486.1	8.6e-142	94.78	PREDICTED: psbP domain-containing protein 4, chloroplastic isoform X1 [Cucumis m...	[more]
KAA0037784.1	8.6e-142	94.78	psbP domain-containing protein 4 [Cucumis melo var. makuwa] >TYK27307.1 psbP dom...	[more]
XP_004139653.1	4.7e-140	93.26	psbP domain-containing protein 4, chloroplastic isoform X1 [Cucumis sativus] >KG...	[more]
XP_038896887.1	4.3e-133	89.14	psbP domain-containing protein 4, chloroplastic [Benincasa hispida]	[more]
XP_022154428.1	1.3e-116	80.15	psbP domain-containing protein 4, chloroplastic [Momordica charantia]	[more]

BLAST of PI0027376 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G77090.1	1.8e-97	72.24	Mog1/PsbP/DUF1795-like photosystem II reaction center PsbP family protein	[more]
AT3G56650.1	5.4e-17	32.28	Mog1/PsbP/DUF1795-like photosystem II reaction center PsbP family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002683	PsbP, C-terminal	PFAM	PF01789	PsbP	coord: 123..264 e-value: 1.0E-11 score: 45.2
None	No IPR available	GENE3D	3.40.1000.10	Mog1/PsbP, alpha/beta/alpha sandwich	coord: 119..266 e-value: 6.4E-25 score: 90.0
None	No IPR available	PANTHER	PTHR31407:SF38	PSBP DOMAIN-CONTAINING PROTEIN 4, CHLOROPLASTIC	coord: 42..267
None	No IPR available	PANTHER	PTHR31407	FAMILY NOT NAMED	coord: 42..267
IPR016123	Mog1/PsbP, alpha/beta/alpha sandwich	SUPERFAMILY	55724	Mog1p/PsbP-like	coord: 115..266

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
PI0027376.1	PI0027376.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015979	photosynthesis
cellular_component	GO:0009535	chloroplast thylakoid membrane
cellular_component	GO:0019898	extrinsic component of membrane
cellular_component	GO:0009654	photosystem II oxygen evolving complex
cellular_component	GO:0009523	photosystem II
molecular_function	GO:0005509	calcium ion binding