Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAGAAGTTGTTGACTGATCTATTGACTGAGATTGTCCAATCGCGATCTAATACATCTTCAAATAATGGAAGAGGCGATTCAAGCGGAAGTAAGAGTGAGAAGGAAACGTTAGCAGGAACATCTTCAATTACGAATGAAGTTGCACGAACGGGAGTAGGAAATGAAACGATAGAACGGAGCAAGTTTAAGAAGGTAGAGATGCCGATTTTCAATGGCATTGATCCTGATTCTTGGTTATTCAAAGTTGAAAGGTATTTTCAGATTCATAAATTGACGGAGGAAGTGAAAATGACGGTGGCGGTTATAAGTTTCAAAGTAACGACTCTAGACTGGTACCGTGTGAAGGAAGAGAGAGAATTGTTTTCGATTGGAAGGCGTTGAAGATGCGTCTATTGCAACAATTTTGATCTCCTCGACAAGGGACGGTATGAAGTCAATTCCTTGCAATTAAACAAGAAATCAACTGTAGAGGAATATATAAATATTTTCGATAAACTTGTTGCACCTTTACCACATTTGTCGAACGAAATCTTGGAGAATACATTCATGAATGGGCTTATACTATGGGTTAGGGCAGAGGTGGAATGTTGGGAGTCCGTTGGGCTGGCCCAAAGAGTAGAAAATAGGGAAGTAGTCTGATCTGAATCGATAGTGAAGATGGAGAGAAGGTCGCGACTATCGACAAAAATAAGGGTTTGAATGTTAGGCTTAACCCTAAAGGGACAGTTCCCATCGCAGCGAAGGAGATGCCGAAGATCACTGAGCTAGTTCCAATGCAAACGATCACATTGCGAGGGGTAAATCCGACTGGTGTTCAAAGGAAGGTACATTTAAGGGTTTGTCTGACGTTGAATTTAAAGCGAAGAGGGAGAAAGAACTATGTTTTCACTGTGATGAACAATACACTATAGGTCATTGATGTAAAGTTAAAGATCAGTATGAGCTTCGAGTTTTGTTGGTACAAAATGATGTTGATGAATTAGAAGTGTTTGAAGATGCAATGGAAGAATTCAAGTTGGTGGAACTCCAAACCACAGAAGTACAGGAAACAGTGGAGTTATTGGTGAATTCAGTAGTTGGTTTATAA
mRNA sequence
ATGAAGAAGTTGTTGACTGATCTATTGACTGAGATTGTCCAATCGCGATCTAATACATCTTCAAATAATGGAAGAGGCGATTCAAGCGGAAGTAAGAGTGAGAAGGAAACGTTAGCAGGAACATCTTCAATTACGAATGAAGTTGCACGAACGGGAGTAGGAAATGAAACGATAGAACGGAGCAAGTTTAAGAAGGTAGAGATGCCGATTTTCAATGGCATTGATCCTGATTCTTGGTTATTCAAAGTTGAAAGGTATTTTCAGATTCATAAATTGACGGAGGAAGTGAAAATGACGGTGGCGGTTATAAGTTTCAAAGTAACGACTCTAGACTGGTACCGTGTGAAGGAAGAGAGAGAATTATGCGTCTATTGCAACAATTTTGATCTCCTCGACAAGGGACGGTATGAAGTCAATTCCTTGCAATTAAACAAGAAATCAACTGTAGAGGAATATATAAATATTTTCGATAAACTTGTTGCACCTTTACCACATTTGTCGAACGAAATCTTGGAGAATACATTCATGAATGGGCTTATACTATGGGTTAGGGCAGAGGTGGAATGTTGGGAGTCCGTTGGGCTGGCCCAAAGAGTAGAAAATAGGGAAGTCGCGACTATCGACAAAAATAAGGGTTTGAATGTTAGGCTTAACCCTAAAGGGACAGTTCCCATCGCAGCGAAGGAGATGCCGAAGATCACTGAGCTAGTTCCAATGCAAACGATCACATTGCGAGGGGTAAATCCGACTGGTGTTCAAAGGAAGTATGAGCTTCGAGTTTTGTTGGTACAAAATGATGTTGATGAATTAGAAGTGTTTGAAGATGCAATGGAAGAATTCAAGTTGGTGGAACTCCAAACCACAGAAGTACAGGAAACAGTGGAGTTATTGGTGAATTCAGTAGTTGGTTTATAA
Coding sequence (CDS)
ATGAAGAAGTTGTTGACTGATCTATTGACTGAGATTGTCCAATCGCGATCTAATACATCTTCAAATAATGGAAGAGGCGATTCAAGCGGAAGTAAGAGTGAGAAGGAAACGTTAGCAGGAACATCTTCAATTACGAATGAAGTTGCACGAACGGGAGTAGGAAATGAAACGATAGAACGGAGCAAGTTTAAGAAGGTAGAGATGCCGATTTTCAATGGCATTGATCCTGATTCTTGGTTATTCAAAGTTGAAAGGTATTTTCAGATTCATAAATTGACGGAGGAAGTGAAAATGACGGTGGCGGTTATAAGTTTCAAAGTAACGACTCTAGACTGGTACCGTGTGAAGGAAGAGAGAGAATTATGCGTCTATTGCAACAATTTTGATCTCCTCGACAAGGGACGGTATGAAGTCAATTCCTTGCAATTAAACAAGAAATCAACTGTAGAGGAATATATAAATATTTTCGATAAACTTGTTGCACCTTTACCACATTTGTCGAACGAAATCTTGGAGAATACATTCATGAATGGGCTTATACTATGGGTTAGGGCAGAGGTGGAATGTTGGGAGTCCGTTGGGCTGGCCCAAAGAGTAGAAAATAGGGAAGTCGCGACTATCGACAAAAATAAGGGTTTGAATGTTAGGCTTAACCCTAAAGGGACAGTTCCCATCGCAGCGAAGGAGATGCCGAAGATCACTGAGCTAGTTCCAATGCAAACGATCACATTGCGAGGGGTAAATCCGACTGGTGTTCAAAGGAAGTATGAGCTTCGAGTTTTGTTGGTACAAAATGATGTTGATGAATTAGAAGTGTTTGAAGATGCAATGGAAGAATTCAAGTTGGTGGAACTCCAAACCACAGAAGTACAGGAAACAGTGGAGTTATTGGTGAATTCAGTAGTTGGTTTATAA
Protein sequence
MKKLLTDLLTEIVQSRSNTSSNNGRGDSSGSKSEKETLAGTSSITNEVARTGVGNETIERSKFKKVEMPIFNGIDPDSWLFKVERYFQIHKLTEEVKMTVAVISFKVTTLDWYRVKEERELCVYCNNFDLLDKGRYEVNSLQLNKKSTVEEYINIFDKLVAPLPHLSNEILENTFMNGLILWVRAEVECWESVGLAQRVENREVATIDKNKGLNVRLNPKGTVPIAAKEMPKITELVPMQTITLRGVNPTGVQRKYELRVLLVQNDVDELEVFEDAMEEFKLVELQTTEVQETVELLVNSVVGL
Homology
BLAST of PI0027161 vs. ExPASy TrEMBL
Match:
A0A5D3DI73 (Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold142G00700 PE=4 SV=1)
HSP 1 Score: 174.5 bits (441), Expect = 6.8e-40
Identity = 135/344 (39.24%), Postives = 180/344 (52.33%), Query Frame = 0
Query: 26 GDSSGSKSEKETLAGTSSITNEVARTGVGNETIERSKFKKVEMPIFNGIDPDSWLFKVER 85
G SS ++ E+ T+ S+ N +T G ++RSKFKKVEMPIF GIDPDSWLF+ +R
Sbjct: 70 GSSSKTQMEETTITAVSNDPNIEGKTEEG-PALDRSKFKKVEMPIFTGIDPDSWLFRADR 129
Query: 86 YFQIHKLTEEVKMTVAVISFKVTTLDWYRVKEERELCVYCNN--------FDLLDKGRYE 145
YF+IH L++ K+TVAVISF LDWYR +EERE ++ F + G
Sbjct: 130 YFKIHNLSDSEKLTVAVISFDGPALDWYRSQEERETFKGWHDLKQKMLVRFRSIRDGTLV 189
Query: 146 VNSLQLNKKSTVEEYINIFDKLVAPLPHLSNEILENTFMNGLILWVRAEVECWESVGLAQ 205
L + +++TVEEY N FDK +AP+ L +LE TFMNGL W+++EVE WE VGLAQ
Sbjct: 190 GRFLTIKQETTVEEYRNRFDKFLAPVAFLQPVVLEETFMNGLSPWLKSEVETWEPVGLAQ 249
Query: 206 ------RVENREVATIDKNKGLNVRLNPKGTVPIA----AKEMPKITELV----PMQTIT 265
++ENRE+ + K GL+ + K A P+I PM+TIT
Sbjct: 250 MMKMALKIENREM--VRKECGLSSAYDSKAAQRAANTRNINSSPRIENTTAGGWPMRTIT 309
Query: 266 LRGVNPTGVQR---------------------------KY------------ELRVLLVQ 305
LR V TG R KY ELR+LLV+
Sbjct: 310 LREV-ATGENRREGPTKRLTDAEFQARREKGLCFRCGEKYYAGHRCKTKDSKELRMLLVK 369
BLAST of PI0027161 vs. ExPASy TrEMBL
Match:
A0A5A7SIV7 (Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold124G00310 PE=4 SV=1)
HSP 1 Score: 174.5 bits (441), Expect = 6.8e-40
Identity = 135/344 (39.24%), Postives = 180/344 (52.33%), Query Frame = 0
Query: 26 GDSSGSKSEKETLAGTSSITNEVARTGVGNETIERSKFKKVEMPIFNGIDPDSWLFKVER 85
G SS ++ E+ T+ S+ N +T G ++RSKFKKVEMPIF GIDPDSWLF+ +R
Sbjct: 390 GSSSKTQMEETTITAVSNDPNIEGKTEEG-PALDRSKFKKVEMPIFTGIDPDSWLFRADR 449
Query: 86 YFQIHKLTEEVKMTVAVISFKVTTLDWYRVKEERELCVYCNN--------FDLLDKGRYE 145
YF+IH L++ K+TVAVISF LDWYR +EERE ++ F + G
Sbjct: 450 YFKIHNLSDSEKLTVAVISFDGPALDWYRSQEERETFKGWHDLKQKMLVRFRSIRDGTLV 509
Query: 146 VNSLQLNKKSTVEEYINIFDKLVAPLPHLSNEILENTFMNGLILWVRAEVECWESVGLAQ 205
L + +++TVEEY N FDK +AP+ L +LE TFMNGL W+++EVE WE VGLAQ
Sbjct: 510 GRFLTIKQETTVEEYRNRFDKFLAPVAFLQPVVLEETFMNGLSPWLKSEVETWEPVGLAQ 569
Query: 206 ------RVENREVATIDKNKGLNVRLNPKGTVPIA----AKEMPKITELV----PMQTIT 265
++ENRE+ + K GL+ + K A P+I PM+TIT
Sbjct: 570 MMKMALKIENREM--VRKECGLSSAYDSKAAQRAANTRNINSSPRIENTTAGGWPMRTIT 629
Query: 266 LRGVNPTGVQR---------------------------KY------------ELRVLLVQ 305
LR V TG R KY ELR+LLV+
Sbjct: 630 LREV-ATGENRREGPTKRLTDAEFQARREKGLCFRCGEKYYAGHRCKTKDSKELRMLLVK 689
BLAST of PI0027161 vs. ExPASy TrEMBL
Match:
A0A5D3CXB1 (Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold94G001180 PE=4 SV=1)
HSP 1 Score: 173.3 bits (438), Expect = 1.5e-39
Identity = 135/344 (39.24%), Postives = 179/344 (52.03%), Query Frame = 0
Query: 26 GDSSGSKSEKETLAGTSSITNEVARTGVGNETIERSKFKKVEMPIFNGIDPDSWLFKVER 85
G SS ++ E+ T+ S+ N +T G ++RSKFKKVEMPIF GIDPDSWLF+ +R
Sbjct: 130 GSSSKTQMEETTITAVSNDPNIEGKTEEG-PALDRSKFKKVEMPIFTGIDPDSWLFRADR 189
Query: 86 YFQIHKLTEEVKMTVAVISFKVTTLDWYRVKEERELCVYCNN--------FDLLDKGRYE 145
YF+IH L++ K+TVAVISF LDWYR +EERE ++ F + G
Sbjct: 190 YFKIHNLSDSEKLTVAVISFDGPALDWYRSQEERETFKGWHDLKQKMLVRFRSIRDGTLV 249
Query: 146 VNSLQLNKKSTVEEYINIFDKLVAPLPHLSNEILENTFMNGLILWVRAEVECWESVGLAQ 205
L + +++TVEEY N FDK +AP+ L +LE TFMNGL W+++EVE WE VGLAQ
Sbjct: 250 GRFLTIKQETTVEEYRNRFDKFLAPVAFLQPVVLEETFMNGLSPWLKSEVETWEPVGLAQ 309
Query: 206 ------RVENREVATIDKNKGLNVRLNPKGTVPIA----AKEMPKITELV----PMQTIT 265
++ENRE+ + K GL+ + K A P I PM+TIT
Sbjct: 310 MMKMALKIENREM--VRKECGLSSAYDSKAAQRAANTRNINSSPMIENTTAGGWPMRTIT 369
Query: 266 LRGVNPTGVQR---------------------------KY------------ELRVLLVQ 305
LR V TG R KY ELR+LLV+
Sbjct: 370 LREV-ATGENRREGPTKRLTDAEFQARREKGLCFRCGEKYHAGHRCKTKDSKELRMLLVK 429
BLAST of PI0027161 vs. ExPASy TrEMBL
Match:
A0A5A7U2S1 (Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold163G00940 PE=4 SV=1)
HSP 1 Score: 173.3 bits (438), Expect = 1.5e-39
Identity = 135/344 (39.24%), Postives = 179/344 (52.03%), Query Frame = 0
Query: 26 GDSSGSKSEKETLAGTSSITNEVARTGVGNETIERSKFKKVEMPIFNGIDPDSWLFKVER 85
G SS ++ E+ T+ S+ N +T G ++RSKFKKVEMPIF GIDPDSWLF+ +R
Sbjct: 130 GSSSKTQMEETTITAVSNDPNIEGKTEEG-PALDRSKFKKVEMPIFTGIDPDSWLFRADR 189
Query: 86 YFQIHKLTEEVKMTVAVISFKVTTLDWYRVKEERELCVYCNN--------FDLLDKGRYE 145
YF+IH L++ K+TVAVISF LDWYR +EERE ++ F + G
Sbjct: 190 YFKIHNLSDSEKLTVAVISFDGPALDWYRSQEERETFKGWHDLKQKMLVRFRSIRDGTLV 249
Query: 146 VNSLQLNKKSTVEEYINIFDKLVAPLPHLSNEILENTFMNGLILWVRAEVECWESVGLAQ 205
L + +++TVEEY N FDK +AP+ L +LE TFMNGL W+++EVE WE VGLAQ
Sbjct: 250 GRFLTIKQETTVEEYRNRFDKFLAPVAFLQPVVLEETFMNGLSPWLKSEVETWEPVGLAQ 309
Query: 206 ------RVENREVATIDKNKGLNVRLNPKGTVPIA----AKEMPKITELV----PMQTIT 265
++ENRE+ + K GL+ + K A P I PM+TIT
Sbjct: 310 MMKMALKIENREM--VRKECGLSSAYDSKAAQRAANTRNINSSPMIENTTAGGWPMRTIT 369
Query: 266 LRGVNPTGVQR---------------------------KY------------ELRVLLVQ 305
LR V TG R KY ELR+LLV+
Sbjct: 370 LREV-ATGENRREGPTKRLTDAEFQARREKGLCFRCGEKYHAGHRCKTKDSKELRMLLVK 429
BLAST of PI0027161 vs. ExPASy TrEMBL
Match:
A0A5A7U6J3 (Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold76G001310 PE=4 SV=1)
HSP 1 Score: 173.3 bits (438), Expect = 1.5e-39
Identity = 135/344 (39.24%), Postives = 179/344 (52.03%), Query Frame = 0
Query: 26 GDSSGSKSEKETLAGTSSITNEVARTGVGNETIERSKFKKVEMPIFNGIDPDSWLFKVER 85
G SS ++ E+ T+ S+ N +T G ++RSKFKKVEMPIF GIDPDSWLF+ +R
Sbjct: 70 GSSSKTQMEETTITAVSNDPNIEGKTEEG-PALDRSKFKKVEMPIFTGIDPDSWLFRADR 129
Query: 86 YFQIHKLTEEVKMTVAVISFKVTTLDWYRVKEERELCVYCNN--------FDLLDKGRYE 145
YF+IH L++ K+TVAVISF LDWYR +EERE ++ F + G
Sbjct: 130 YFKIHNLSDSEKLTVAVISFDGPALDWYRSQEERETFKGWHDLKQKMLVRFRSIRDGTLV 189
Query: 146 VNSLQLNKKSTVEEYINIFDKLVAPLPHLSNEILENTFMNGLILWVRAEVECWESVGLAQ 205
L + +++TVEEY N FDK +AP+ L +LE TFMNGL W+++EVE WE VGLAQ
Sbjct: 190 GRFLTIKQETTVEEYRNRFDKFLAPVAFLQPVVLEETFMNGLSPWLKSEVETWEPVGLAQ 249
Query: 206 ------RVENREVATIDKNKGLNVRLNPKGTVPIA----AKEMPKITELV----PMQTIT 265
++ENRE+ + K GL+ + K A P I PM+TIT
Sbjct: 250 MMKMALKIENREM--VRKECGLSSAYDSKAAQRAANTRNINSSPMIENTTAGGWPMRTIT 309
Query: 266 LRGVNPTGVQR---------------------------KY------------ELRVLLVQ 305
LR V TG R KY ELR+LLV+
Sbjct: 310 LREV-ATGENRREGPTKRLTDAEFQARREKGLCFRCGEKYHAGHRCKTKDSKELRMLLVK 369
BLAST of PI0027161 vs. NCBI nr
Match:
TYK23090.1 (Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa])
HSP 1 Score: 174.5 bits (441), Expect = 1.4e-39
Identity = 135/344 (39.24%), Postives = 180/344 (52.33%), Query Frame = 0
Query: 26 GDSSGSKSEKETLAGTSSITNEVARTGVGNETIERSKFKKVEMPIFNGIDPDSWLFKVER 85
G SS ++ E+ T+ S+ N +T G ++RSKFKKVEMPIF GIDPDSWLF+ +R
Sbjct: 70 GSSSKTQMEETTITAVSNDPNIEGKTEEG-PALDRSKFKKVEMPIFTGIDPDSWLFRADR 129
Query: 86 YFQIHKLTEEVKMTVAVISFKVTTLDWYRVKEERELCVYCNN--------FDLLDKGRYE 145
YF+IH L++ K+TVAVISF LDWYR +EERE ++ F + G
Sbjct: 130 YFKIHNLSDSEKLTVAVISFDGPALDWYRSQEERETFKGWHDLKQKMLVRFRSIRDGTLV 189
Query: 146 VNSLQLNKKSTVEEYINIFDKLVAPLPHLSNEILENTFMNGLILWVRAEVECWESVGLAQ 205
L + +++TVEEY N FDK +AP+ L +LE TFMNGL W+++EVE WE VGLAQ
Sbjct: 190 GRFLTIKQETTVEEYRNRFDKFLAPVAFLQPVVLEETFMNGLSPWLKSEVETWEPVGLAQ 249
Query: 206 ------RVENREVATIDKNKGLNVRLNPKGTVPIA----AKEMPKITELV----PMQTIT 265
++ENRE+ + K GL+ + K A P+I PM+TIT
Sbjct: 250 MMKMALKIENREM--VRKECGLSSAYDSKAAQRAANTRNINSSPRIENTTAGGWPMRTIT 309
Query: 266 LRGVNPTGVQR---------------------------KY------------ELRVLLVQ 305
LR V TG R KY ELR+LLV+
Sbjct: 310 LREV-ATGENRREGPTKRLTDAEFQARREKGLCFRCGEKYYAGHRCKTKDSKELRMLLVK 369
BLAST of PI0027161 vs. NCBI nr
Match:
KAA0025132.1 (Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa])
HSP 1 Score: 174.5 bits (441), Expect = 1.4e-39
Identity = 135/344 (39.24%), Postives = 180/344 (52.33%), Query Frame = 0
Query: 26 GDSSGSKSEKETLAGTSSITNEVARTGVGNETIERSKFKKVEMPIFNGIDPDSWLFKVER 85
G SS ++ E+ T+ S+ N +T G ++RSKFKKVEMPIF GIDPDSWLF+ +R
Sbjct: 390 GSSSKTQMEETTITAVSNDPNIEGKTEEG-PALDRSKFKKVEMPIFTGIDPDSWLFRADR 449
Query: 86 YFQIHKLTEEVKMTVAVISFKVTTLDWYRVKEERELCVYCNN--------FDLLDKGRYE 145
YF+IH L++ K+TVAVISF LDWYR +EERE ++ F + G
Sbjct: 450 YFKIHNLSDSEKLTVAVISFDGPALDWYRSQEERETFKGWHDLKQKMLVRFRSIRDGTLV 509
Query: 146 VNSLQLNKKSTVEEYINIFDKLVAPLPHLSNEILENTFMNGLILWVRAEVECWESVGLAQ 205
L + +++TVEEY N FDK +AP+ L +LE TFMNGL W+++EVE WE VGLAQ
Sbjct: 510 GRFLTIKQETTVEEYRNRFDKFLAPVAFLQPVVLEETFMNGLSPWLKSEVETWEPVGLAQ 569
Query: 206 ------RVENREVATIDKNKGLNVRLNPKGTVPIA----AKEMPKITELV----PMQTIT 265
++ENRE+ + K GL+ + K A P+I PM+TIT
Sbjct: 570 MMKMALKIENREM--VRKECGLSSAYDSKAAQRAANTRNINSSPRIENTTAGGWPMRTIT 629
Query: 266 LRGVNPTGVQR---------------------------KY------------ELRVLLVQ 305
LR V TG R KY ELR+LLV+
Sbjct: 630 LREV-ATGENRREGPTKRLTDAEFQARREKGLCFRCGEKYYAGHRCKTKDSKELRMLLVK 689
BLAST of PI0027161 vs. NCBI nr
Match:
TYK15990.1 (Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa])
HSP 1 Score: 173.3 bits (438), Expect = 3.1e-39
Identity = 135/344 (39.24%), Postives = 179/344 (52.03%), Query Frame = 0
Query: 26 GDSSGSKSEKETLAGTSSITNEVARTGVGNETIERSKFKKVEMPIFNGIDPDSWLFKVER 85
G SS ++ E+ T+ S+ N +T G ++RSKFKKVEMPIF GIDPDSWLF+ +R
Sbjct: 130 GSSSKTQMEETTITAVSNDPNIEGKTEEG-PALDRSKFKKVEMPIFTGIDPDSWLFRADR 189
Query: 86 YFQIHKLTEEVKMTVAVISFKVTTLDWYRVKEERELCVYCNN--------FDLLDKGRYE 145
YF+IH L++ K+TVAVISF LDWYR +EERE ++ F + G
Sbjct: 190 YFKIHNLSDSEKLTVAVISFDGPALDWYRSQEERETFKGWHDLKQKMLVRFRSIRDGTLV 249
Query: 146 VNSLQLNKKSTVEEYINIFDKLVAPLPHLSNEILENTFMNGLILWVRAEVECWESVGLAQ 205
L + +++TVEEY N FDK +AP+ L +LE TFMNGL W+++EVE WE VGLAQ
Sbjct: 250 GRFLTIKQETTVEEYRNRFDKFLAPVAFLQPVVLEETFMNGLSPWLKSEVETWEPVGLAQ 309
Query: 206 ------RVENREVATIDKNKGLNVRLNPKGTVPIA----AKEMPKITELV----PMQTIT 265
++ENRE+ + K GL+ + K A P I PM+TIT
Sbjct: 310 MMKMALKIENREM--VRKECGLSSAYDSKAAQRAANTRNINSSPMIENTTAGGWPMRTIT 369
Query: 266 LRGVNPTGVQR---------------------------KY------------ELRVLLVQ 305
LR V TG R KY ELR+LLV+
Sbjct: 370 LREV-ATGENRREGPTKRLTDAEFQARREKGLCFRCGEKYHAGHRCKTKDSKELRMLLVK 429
BLAST of PI0027161 vs. NCBI nr
Match:
KAA0049776.1 (Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa])
HSP 1 Score: 173.3 bits (438), Expect = 3.1e-39
Identity = 135/344 (39.24%), Postives = 179/344 (52.03%), Query Frame = 0
Query: 26 GDSSGSKSEKETLAGTSSITNEVARTGVGNETIERSKFKKVEMPIFNGIDPDSWLFKVER 85
G SS ++ E+ T+ S+ N +T G ++RSKFKKVEMPIF GIDPDSWLF+ +R
Sbjct: 70 GSSSKTQMEETTITAVSNDPNIEGKTEEG-PALDRSKFKKVEMPIFTGIDPDSWLFRADR 129
Query: 86 YFQIHKLTEEVKMTVAVISFKVTTLDWYRVKEERELCVYCNN--------FDLLDKGRYE 145
YF+IH L++ K+TVAVISF LDWYR +EERE ++ F + G
Sbjct: 130 YFKIHNLSDSEKLTVAVISFDGPALDWYRSQEERETFKGWHDLKQKMLVRFRSIRDGTLV 189
Query: 146 VNSLQLNKKSTVEEYINIFDKLVAPLPHLSNEILENTFMNGLILWVRAEVECWESVGLAQ 205
L + +++TVEEY N FDK +AP+ L +LE TFMNGL W+++EVE WE VGLAQ
Sbjct: 190 GRFLTIKQETTVEEYRNRFDKFLAPVAFLQPVVLEETFMNGLSPWLKSEVETWEPVGLAQ 249
Query: 206 ------RVENREVATIDKNKGLNVRLNPKGTVPIA----AKEMPKITELV----PMQTIT 265
++ENRE+ + K GL+ + K A P I PM+TIT
Sbjct: 250 MMKMALKIENREM--VRKECGLSSAYDSKAAQRAANTRNINSSPMIENTTAGGWPMRTIT 309
Query: 266 LRGVNPTGVQR---------------------------KY------------ELRVLLVQ 305
LR V TG R KY ELR+LLV+
Sbjct: 310 LREV-ATGENRREGPTKRLTDAEFQARREKGLCFRCGEKYHAGHRCKTKDSKELRMLLVK 369
BLAST of PI0027161 vs. NCBI nr
Match:
KAA0049630.1 (Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa])
HSP 1 Score: 173.3 bits (438), Expect = 3.1e-39
Identity = 135/344 (39.24%), Postives = 179/344 (52.03%), Query Frame = 0
Query: 26 GDSSGSKSEKETLAGTSSITNEVARTGVGNETIERSKFKKVEMPIFNGIDPDSWLFKVER 85
G SS ++ E+ T+ S+ N +T G ++RSKFKKVEMPIF GIDPDSWLF+ +R
Sbjct: 130 GSSSKTQMEETTITAVSNDPNIEGKTEEG-PALDRSKFKKVEMPIFTGIDPDSWLFRADR 189
Query: 86 YFQIHKLTEEVKMTVAVISFKVTTLDWYRVKEERELCVYCNN--------FDLLDKGRYE 145
YF+IH L++ K+TVAVISF LDWYR +EERE ++ F + G
Sbjct: 190 YFKIHNLSDSEKLTVAVISFDGPALDWYRSQEERETFKGWHDLKQKMLVRFRSIRDGTLV 249
Query: 146 VNSLQLNKKSTVEEYINIFDKLVAPLPHLSNEILENTFMNGLILWVRAEVECWESVGLAQ 205
L + +++TVEEY N FDK +AP+ L +LE TFMNGL W+++EVE WE VGLAQ
Sbjct: 250 GRFLTIKQETTVEEYRNRFDKFLAPVAFLQPVVLEETFMNGLSPWLKSEVETWEPVGLAQ 309
Query: 206 ------RVENREVATIDKNKGLNVRLNPKGTVPIA----AKEMPKITELV----PMQTIT 265
++ENRE+ + K GL+ + K A P I PM+TIT
Sbjct: 310 MMKMALKIENREM--VRKECGLSSAYDSKAAQRAANTRNINSSPMIENTTAGGWPMRTIT 369
Query: 266 LRGVNPTGVQR---------------------------KY------------ELRVLLVQ 305
LR V TG R KY ELR+LLV+
Sbjct: 370 LREV-ATGENRREGPTKRLTDAEFQARREKGLCFRCGEKYHAGHRCKTKDSKELRMLLVK 429
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A5D3DI73 | 6.8e-40 | 39.24 | Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567... | [more] |
A0A5A7SIV7 | 6.8e-40 | 39.24 | Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2... | [more] |
A0A5D3CXB1 | 1.5e-39 | 39.24 | Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567... | [more] |
A0A5A7U2S1 | 1.5e-39 | 39.24 | Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2... | [more] |
A0A5A7U6J3 | 1.5e-39 | 39.24 | Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2... | [more] |
Match Name | E-value | Identity | Description | |
TYK23090.1 | 1.4e-39 | 39.24 | Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa] | [more] |
KAA0025132.1 | 1.4e-39 | 39.24 | Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa] | [more] |
TYK15990.1 | 3.1e-39 | 39.24 | Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa] | [more] |
KAA0049776.1 | 3.1e-39 | 39.24 | Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa] | [more] |
KAA0049630.1 | 3.1e-39 | 39.24 | Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa] | [more] |
Match Name | E-value | Identity | Description | |