PI0027161 (gene) Melon (PI 482460) v1

Overview


Name	PI0027161
Type	gene
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	Ty3/gypsy retrotransposon protein
Location	chr08: 10905115 .. 10906204 (+)
RNA-Seq Expression	PI0027161
Synteny	PI0027161

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAGAAGTTGTTGACTGATCTATTGACTGAGATTGTCCAATCGCGATCTAATACATCTTCAAATAATGGAAGAGGCGATTCAAGCGGAAGTAAGAGTGAGAAGGAAACGTTAGCAGGAACATCTTCAATTACGAATGAAGTTGCACGAACGGGAGTAGGAAATGAAACGATAGAACGGAGCAAGTTTAAGAAGGTAGAGATGCCGATTTTCAATGGCATTGATCCTGATTCTTGGTTATTCAAAGTTGAAAGGTATTTTCAGATTCATAAATTGACGGAGGAAGTGAAAATGACGGTGGCGGTTATAAGTTTCAAAGTAACGACTCTAGACTGGTACCGTGTGAAGGAAGAGAGAGAATTGTTTTCGATTGGAAGGCGTTGAAGATGCGTCTATTGCAACAATTTTGATCTCCTCGACAAGGGACGGTATGAAGTCAATTCCTTGCAATTAAACAAGAAATCAACTGTAGAGGAATATATAAATATTTTCGATAAACTTGTTGCACCTTTACCACATTTGTCGAACGAAATCTTGGAGAATACATTCATGAATGGGCTTATACTATGGGTTAGGGCAGAGGTGGAATGTTGGGAGTCCGTTGGGCTGGCCCAAAGAGTAGAAAATAGGGAAGTAGTCTGATCTGAATCGATAGTGAAGATGGAGAGAAGGTCGCGACTATCGACAAAAATAAGGGTTTGAATGTTAGGCTTAACCCTAAAGGGACAGTTCCCATCGCAGCGAAGGAGATGCCGAAGATCACTGAGCTAGTTCCAATGCAAACGATCACATTGCGAGGGGTAAATCCGACTGGTGTTCAAAGGAAGGTACATTTAAGGGTTTGTCTGACGTTGAATTTAAAGCGAAGAGGGAGAAAGAACTATGTTTTCACTGTGATGAACAATACACTATAGGTCATTGATGTAAAGTTAAAGATCAGTATGAGCTTCGAGTTTTGTTGGTACAAAATGATGTTGATGAATTAGAAGTGTTTGAAGATGCAATGGAAGAATTCAAGTTGGTGGAACTCCAAACCACAGAAGTACAGGAAACAGTGGAGTTATTGGTGAATTCAGTAGTTGGTTTATAA

mRNA sequence

ATGAAGAAGTTGTTGACTGATCTATTGACTGAGATTGTCCAATCGCGATCTAATACATCTTCAAATAATGGAAGAGGCGATTCAAGCGGAAGTAAGAGTGAGAAGGAAACGTTAGCAGGAACATCTTCAATTACGAATGAAGTTGCACGAACGGGAGTAGGAAATGAAACGATAGAACGGAGCAAGTTTAAGAAGGTAGAGATGCCGATTTTCAATGGCATTGATCCTGATTCTTGGTTATTCAAAGTTGAAAGGTATTTTCAGATTCATAAATTGACGGAGGAAGTGAAAATGACGGTGGCGGTTATAAGTTTCAAAGTAACGACTCTAGACTGGTACCGTGTGAAGGAAGAGAGAGAATTATGCGTCTATTGCAACAATTTTGATCTCCTCGACAAGGGACGGTATGAAGTCAATTCCTTGCAATTAAACAAGAAATCAACTGTAGAGGAATATATAAATATTTTCGATAAACTTGTTGCACCTTTACCACATTTGTCGAACGAAATCTTGGAGAATACATTCATGAATGGGCTTATACTATGGGTTAGGGCAGAGGTGGAATGTTGGGAGTCCGTTGGGCTGGCCCAAAGAGTAGAAAATAGGGAAGTCGCGACTATCGACAAAAATAAGGGTTTGAATGTTAGGCTTAACCCTAAAGGGACAGTTCCCATCGCAGCGAAGGAGATGCCGAAGATCACTGAGCTAGTTCCAATGCAAACGATCACATTGCGAGGGGTAAATCCGACTGGTGTTCAAAGGAAGTATGAGCTTCGAGTTTTGTTGGTACAAAATGATGTTGATGAATTAGAAGTGTTTGAAGATGCAATGGAAGAATTCAAGTTGGTGGAACTCCAAACCACAGAAGTACAGGAAACAGTGGAGTTATTGGTGAATTCAGTAGTTGGTTTATAA

Coding sequence (CDS)

ATGAAGAAGTTGTTGACTGATCTATTGACTGAGATTGTCCAATCGCGATCTAATACATCTTCAAATAATGGAAGAGGCGATTCAAGCGGAAGTAAGAGTGAGAAGGAAACGTTAGCAGGAACATCTTCAATTACGAATGAAGTTGCACGAACGGGAGTAGGAAATGAAACGATAGAACGGAGCAAGTTTAAGAAGGTAGAGATGCCGATTTTCAATGGCATTGATCCTGATTCTTGGTTATTCAAAGTTGAAAGGTATTTTCAGATTCATAAATTGACGGAGGAAGTGAAAATGACGGTGGCGGTTATAAGTTTCAAAGTAACGACTCTAGACTGGTACCGTGTGAAGGAAGAGAGAGAATTATGCGTCTATTGCAACAATTTTGATCTCCTCGACAAGGGACGGTATGAAGTCAATTCCTTGCAATTAAACAAGAAATCAACTGTAGAGGAATATATAAATATTTTCGATAAACTTGTTGCACCTTTACCACATTTGTCGAACGAAATCTTGGAGAATACATTCATGAATGGGCTTATACTATGGGTTAGGGCAGAGGTGGAATGTTGGGAGTCCGTTGGGCTGGCCCAAAGAGTAGAAAATAGGGAAGTCGCGACTATCGACAAAAATAAGGGTTTGAATGTTAGGCTTAACCCTAAAGGGACAGTTCCCATCGCAGCGAAGGAGATGCCGAAGATCACTGAGCTAGTTCCAATGCAAACGATCACATTGCGAGGGGTAAATCCGACTGGTGTTCAAAGGAAGTATGAGCTTCGAGTTTTGTTGGTACAAAATGATGTTGATGAATTAGAAGTGTTTGAAGATGCAATGGAAGAATTCAAGTTGGTGGAACTCCAAACCACAGAAGTACAGGAAACAGTGGAGTTATTGGTGAATTCAGTAGTTGGTTTATAA

Protein sequence

MKKLLTDLLTEIVQSRSNTSSNNGRGDSSGSKSEKETLAGTSSITNEVARTGVGNETIERSKFKKVEMPIFNGIDPDSWLFKVERYFQIHKLTEEVKMTVAVISFKVTTLDWYRVKEERELCVYCNNFDLLDKGRYEVNSLQLNKKSTVEEYINIFDKLVAPLPHLSNEILENTFMNGLILWVRAEVECWESVGLAQRVENREVATIDKNKGLNVRLNPKGTVPIAAKEMPKITELVPMQTITLRGVNPTGVQRKYELRVLLVQNDVDELEVFEDAMEEFKLVELQTTEVQETVELLVNSVVGL

Homology

[Close]

BLAST of PI0027161 vs. ExPASy TrEMBL
Match: A0A5D3DI73 (Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold142G00700 PE=4 SV=1)

HSP 1 Score: 174.5 bits (441), Expect = 6.8e-40
Identity = 135/344 (39.24%), Postives = 180/344 (52.33%), Query Frame = 0


Query: 26  GDSSGSKSEKETLAGTSSITNEVARTGVGNETIERSKFKKVEMPIFNGIDPDSWLFKVER 85
           G SS ++ E+ T+   S+  N   +T  G   ++RSKFKKVEMPIF GIDPDSWLF+ +R
Sbjct: 70  GSSSKTQMEETTITAVSNDPNIEGKTEEG-PALDRSKFKKVEMPIFTGIDPDSWLFRADR 129

Query: 86  YFQIHKLTEEVKMTVAVISFKVTTLDWYRVKEERELCVYCNN--------FDLLDKGRYE 145
           YF+IH L++  K+TVAVISF    LDWYR +EERE     ++        F  +  G   
Sbjct: 130 YFKIHNLSDSEKLTVAVISFDGPALDWYRSQEERETFKGWHDLKQKMLVRFRSIRDGTLV 189

Query: 146 VNSLQLNKKSTVEEYINIFDKLVAPLPHLSNEILENTFMNGLILWVRAEVECWESVGLAQ 205
              L + +++TVEEY N FDK +AP+  L   +LE TFMNGL  W+++EVE WE VGLAQ
Sbjct: 190 GRFLTIKQETTVEEYRNRFDKFLAPVAFLQPVVLEETFMNGLSPWLKSEVETWEPVGLAQ 249

Query: 206 ------RVENREVATIDKNKGLNVRLNPKGTVPIA----AKEMPKITELV----PMQTIT 265
                 ++ENRE+  + K  GL+   + K     A        P+I        PM+TIT
Sbjct: 250 MMKMALKIENREM--VRKECGLSSAYDSKAAQRAANTRNINSSPRIENTTAGGWPMRTIT 309

Query: 266 LRGVNPTGVQR---------------------------KY------------ELRVLLVQ 305
           LR V  TG  R                           KY            ELR+LLV+
Sbjct: 310 LREV-ATGENRREGPTKRLTDAEFQARREKGLCFRCGEKYYAGHRCKTKDSKELRMLLVK 369

[Close]

BLAST of PI0027161 vs. ExPASy TrEMBL
Match: A0A5A7SIV7 (Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold124G00310 PE=4 SV=1)

HSP 1 Score: 174.5 bits (441), Expect = 6.8e-40
Identity = 135/344 (39.24%), Postives = 180/344 (52.33%), Query Frame = 0


Query: 26  GDSSGSKSEKETLAGTSSITNEVARTGVGNETIERSKFKKVEMPIFNGIDPDSWLFKVER 85
           G SS ++ E+ T+   S+  N   +T  G   ++RSKFKKVEMPIF GIDPDSWLF+ +R
Sbjct: 390 GSSSKTQMEETTITAVSNDPNIEGKTEEG-PALDRSKFKKVEMPIFTGIDPDSWLFRADR 449

Query: 86  YFQIHKLTEEVKMTVAVISFKVTTLDWYRVKEERELCVYCNN--------FDLLDKGRYE 145
           YF+IH L++  K+TVAVISF    LDWYR +EERE     ++        F  +  G   
Sbjct: 450 YFKIHNLSDSEKLTVAVISFDGPALDWYRSQEERETFKGWHDLKQKMLVRFRSIRDGTLV 509

Query: 146 VNSLQLNKKSTVEEYINIFDKLVAPLPHLSNEILENTFMNGLILWVRAEVECWESVGLAQ 205
              L + +++TVEEY N FDK +AP+  L   +LE TFMNGL  W+++EVE WE VGLAQ
Sbjct: 510 GRFLTIKQETTVEEYRNRFDKFLAPVAFLQPVVLEETFMNGLSPWLKSEVETWEPVGLAQ 569

Query: 206 ------RVENREVATIDKNKGLNVRLNPKGTVPIA----AKEMPKITELV----PMQTIT 265
                 ++ENRE+  + K  GL+   + K     A        P+I        PM+TIT
Sbjct: 570 MMKMALKIENREM--VRKECGLSSAYDSKAAQRAANTRNINSSPRIENTTAGGWPMRTIT 629

Query: 266 LRGVNPTGVQR---------------------------KY------------ELRVLLVQ 305
           LR V  TG  R                           KY            ELR+LLV+
Sbjct: 630 LREV-ATGENRREGPTKRLTDAEFQARREKGLCFRCGEKYYAGHRCKTKDSKELRMLLVK 689

[Close]

BLAST of PI0027161 vs. ExPASy TrEMBL
Match: A0A5D3CXB1 (Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold94G001180 PE=4 SV=1)

HSP 1 Score: 173.3 bits (438), Expect = 1.5e-39
Identity = 135/344 (39.24%), Postives = 179/344 (52.03%), Query Frame = 0


Query: 26  GDSSGSKSEKETLAGTSSITNEVARTGVGNETIERSKFKKVEMPIFNGIDPDSWLFKVER 85
           G SS ++ E+ T+   S+  N   +T  G   ++RSKFKKVEMPIF GIDPDSWLF+ +R
Sbjct: 130 GSSSKTQMEETTITAVSNDPNIEGKTEEG-PALDRSKFKKVEMPIFTGIDPDSWLFRADR 189

Query: 86  YFQIHKLTEEVKMTVAVISFKVTTLDWYRVKEERELCVYCNN--------FDLLDKGRYE 145
           YF+IH L++  K+TVAVISF    LDWYR +EERE     ++        F  +  G   
Sbjct: 190 YFKIHNLSDSEKLTVAVISFDGPALDWYRSQEERETFKGWHDLKQKMLVRFRSIRDGTLV 249

Query: 146 VNSLQLNKKSTVEEYINIFDKLVAPLPHLSNEILENTFMNGLILWVRAEVECWESVGLAQ 205
              L + +++TVEEY N FDK +AP+  L   +LE TFMNGL  W+++EVE WE VGLAQ
Sbjct: 250 GRFLTIKQETTVEEYRNRFDKFLAPVAFLQPVVLEETFMNGLSPWLKSEVETWEPVGLAQ 309

Query: 206 ------RVENREVATIDKNKGLNVRLNPKGTVPIA----AKEMPKITELV----PMQTIT 265
                 ++ENRE+  + K  GL+   + K     A        P I        PM+TIT
Sbjct: 310 MMKMALKIENREM--VRKECGLSSAYDSKAAQRAANTRNINSSPMIENTTAGGWPMRTIT 369

Query: 266 LRGVNPTGVQR---------------------------KY------------ELRVLLVQ 305
           LR V  TG  R                           KY            ELR+LLV+
Sbjct: 370 LREV-ATGENRREGPTKRLTDAEFQARREKGLCFRCGEKYHAGHRCKTKDSKELRMLLVK 429

[Close]

BLAST of PI0027161 vs. ExPASy TrEMBL
Match: A0A5A7U2S1 (Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold163G00940 PE=4 SV=1)

HSP 1 Score: 173.3 bits (438), Expect = 1.5e-39
Identity = 135/344 (39.24%), Postives = 179/344 (52.03%), Query Frame = 0


Query: 26  GDSSGSKSEKETLAGTSSITNEVARTGVGNETIERSKFKKVEMPIFNGIDPDSWLFKVER 85
           G SS ++ E+ T+   S+  N   +T  G   ++RSKFKKVEMPIF GIDPDSWLF+ +R
Sbjct: 130 GSSSKTQMEETTITAVSNDPNIEGKTEEG-PALDRSKFKKVEMPIFTGIDPDSWLFRADR 189

Query: 86  YFQIHKLTEEVKMTVAVISFKVTTLDWYRVKEERELCVYCNN--------FDLLDKGRYE 145
           YF+IH L++  K+TVAVISF    LDWYR +EERE     ++        F  +  G   
Sbjct: 190 YFKIHNLSDSEKLTVAVISFDGPALDWYRSQEERETFKGWHDLKQKMLVRFRSIRDGTLV 249

Query: 146 VNSLQLNKKSTVEEYINIFDKLVAPLPHLSNEILENTFMNGLILWVRAEVECWESVGLAQ 205
              L + +++TVEEY N FDK +AP+  L   +LE TFMNGL  W+++EVE WE VGLAQ
Sbjct: 250 GRFLTIKQETTVEEYRNRFDKFLAPVAFLQPVVLEETFMNGLSPWLKSEVETWEPVGLAQ 309

Query: 206 ------RVENREVATIDKNKGLNVRLNPKGTVPIA----AKEMPKITELV----PMQTIT 265
                 ++ENRE+  + K  GL+   + K     A        P I        PM+TIT
Sbjct: 310 MMKMALKIENREM--VRKECGLSSAYDSKAAQRAANTRNINSSPMIENTTAGGWPMRTIT 369

Query: 266 LRGVNPTGVQR---------------------------KY------------ELRVLLVQ 305
           LR V  TG  R                           KY            ELR+LLV+
Sbjct: 370 LREV-ATGENRREGPTKRLTDAEFQARREKGLCFRCGEKYHAGHRCKTKDSKELRMLLVK 429

[Close]

BLAST of PI0027161 vs. ExPASy TrEMBL
Match: A0A5A7U6J3 (Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold76G001310 PE=4 SV=1)

HSP 1 Score: 173.3 bits (438), Expect = 1.5e-39
Identity = 135/344 (39.24%), Postives = 179/344 (52.03%), Query Frame = 0


Query: 26  GDSSGSKSEKETLAGTSSITNEVARTGVGNETIERSKFKKVEMPIFNGIDPDSWLFKVER 85
           G SS ++ E+ T+   S+  N   +T  G   ++RSKFKKVEMPIF GIDPDSWLF+ +R
Sbjct: 70  GSSSKTQMEETTITAVSNDPNIEGKTEEG-PALDRSKFKKVEMPIFTGIDPDSWLFRADR 129

Query: 86  YFQIHKLTEEVKMTVAVISFKVTTLDWYRVKEERELCVYCNN--------FDLLDKGRYE 145
           YF+IH L++  K+TVAVISF    LDWYR +EERE     ++        F  +  G   
Sbjct: 130 YFKIHNLSDSEKLTVAVISFDGPALDWYRSQEERETFKGWHDLKQKMLVRFRSIRDGTLV 189

Query: 146 VNSLQLNKKSTVEEYINIFDKLVAPLPHLSNEILENTFMNGLILWVRAEVECWESVGLAQ 205
              L + +++TVEEY N FDK +AP+  L   +LE TFMNGL  W+++EVE WE VGLAQ
Sbjct: 190 GRFLTIKQETTVEEYRNRFDKFLAPVAFLQPVVLEETFMNGLSPWLKSEVETWEPVGLAQ 249

Query: 206 ------RVENREVATIDKNKGLNVRLNPKGTVPIA----AKEMPKITELV----PMQTIT 265
                 ++ENRE+  + K  GL+   + K     A        P I        PM+TIT
Sbjct: 250 MMKMALKIENREM--VRKECGLSSAYDSKAAQRAANTRNINSSPMIENTTAGGWPMRTIT 309

Query: 266 LRGVNPTGVQR---------------------------KY------------ELRVLLVQ 305
           LR V  TG  R                           KY            ELR+LLV+
Sbjct: 310 LREV-ATGENRREGPTKRLTDAEFQARREKGLCFRCGEKYHAGHRCKTKDSKELRMLLVK 369

[Close]

BLAST of PI0027161 vs. NCBI nr
Match: TYK23090.1 (Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 174.5 bits (441), Expect = 1.4e-39
Identity = 135/344 (39.24%), Postives = 180/344 (52.33%), Query Frame = 0


Query: 26  GDSSGSKSEKETLAGTSSITNEVARTGVGNETIERSKFKKVEMPIFNGIDPDSWLFKVER 85
           G SS ++ E+ T+   S+  N   +T  G   ++RSKFKKVEMPIF GIDPDSWLF+ +R
Sbjct: 70  GSSSKTQMEETTITAVSNDPNIEGKTEEG-PALDRSKFKKVEMPIFTGIDPDSWLFRADR 129

Query: 86  YFQIHKLTEEVKMTVAVISFKVTTLDWYRVKEERELCVYCNN--------FDLLDKGRYE 145
           YF+IH L++  K+TVAVISF    LDWYR +EERE     ++        F  +  G   
Sbjct: 130 YFKIHNLSDSEKLTVAVISFDGPALDWYRSQEERETFKGWHDLKQKMLVRFRSIRDGTLV 189

Query: 146 VNSLQLNKKSTVEEYINIFDKLVAPLPHLSNEILENTFMNGLILWVRAEVECWESVGLAQ 205
              L + +++TVEEY N FDK +AP+  L   +LE TFMNGL  W+++EVE WE VGLAQ
Sbjct: 190 GRFLTIKQETTVEEYRNRFDKFLAPVAFLQPVVLEETFMNGLSPWLKSEVETWEPVGLAQ 249

Query: 206 ------RVENREVATIDKNKGLNVRLNPKGTVPIA----AKEMPKITELV----PMQTIT 265
                 ++ENRE+  + K  GL+   + K     A        P+I        PM+TIT
Sbjct: 250 MMKMALKIENREM--VRKECGLSSAYDSKAAQRAANTRNINSSPRIENTTAGGWPMRTIT 309

Query: 266 LRGVNPTGVQR---------------------------KY------------ELRVLLVQ 305
           LR V  TG  R                           KY            ELR+LLV+
Sbjct: 310 LREV-ATGENRREGPTKRLTDAEFQARREKGLCFRCGEKYYAGHRCKTKDSKELRMLLVK 369

[Close]

BLAST of PI0027161 vs. NCBI nr
Match: KAA0025132.1 (Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 174.5 bits (441), Expect = 1.4e-39
Identity = 135/344 (39.24%), Postives = 180/344 (52.33%), Query Frame = 0


Query: 26  GDSSGSKSEKETLAGTSSITNEVARTGVGNETIERSKFKKVEMPIFNGIDPDSWLFKVER 85
           G SS ++ E+ T+   S+  N   +T  G   ++RSKFKKVEMPIF GIDPDSWLF+ +R
Sbjct: 390 GSSSKTQMEETTITAVSNDPNIEGKTEEG-PALDRSKFKKVEMPIFTGIDPDSWLFRADR 449

Query: 86  YFQIHKLTEEVKMTVAVISFKVTTLDWYRVKEERELCVYCNN--------FDLLDKGRYE 145
           YF+IH L++  K+TVAVISF    LDWYR +EERE     ++        F  +  G   
Sbjct: 450 YFKIHNLSDSEKLTVAVISFDGPALDWYRSQEERETFKGWHDLKQKMLVRFRSIRDGTLV 509

Query: 146 VNSLQLNKKSTVEEYINIFDKLVAPLPHLSNEILENTFMNGLILWVRAEVECWESVGLAQ 205
              L + +++TVEEY N FDK +AP+  L   +LE TFMNGL  W+++EVE WE VGLAQ
Sbjct: 510 GRFLTIKQETTVEEYRNRFDKFLAPVAFLQPVVLEETFMNGLSPWLKSEVETWEPVGLAQ 569

Query: 206 ------RVENREVATIDKNKGLNVRLNPKGTVPIA----AKEMPKITELV----PMQTIT 265
                 ++ENRE+  + K  GL+   + K     A        P+I        PM+TIT
Sbjct: 570 MMKMALKIENREM--VRKECGLSSAYDSKAAQRAANTRNINSSPRIENTTAGGWPMRTIT 629

Query: 266 LRGVNPTGVQR---------------------------KY------------ELRVLLVQ 305
           LR V  TG  R                           KY            ELR+LLV+
Sbjct: 630 LREV-ATGENRREGPTKRLTDAEFQARREKGLCFRCGEKYYAGHRCKTKDSKELRMLLVK 689

[Close]

BLAST of PI0027161 vs. NCBI nr
Match: TYK15990.1 (Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 173.3 bits (438), Expect = 3.1e-39
Identity = 135/344 (39.24%), Postives = 179/344 (52.03%), Query Frame = 0


Query: 26  GDSSGSKSEKETLAGTSSITNEVARTGVGNETIERSKFKKVEMPIFNGIDPDSWLFKVER 85
           G SS ++ E+ T+   S+  N   +T  G   ++RSKFKKVEMPIF GIDPDSWLF+ +R
Sbjct: 130 GSSSKTQMEETTITAVSNDPNIEGKTEEG-PALDRSKFKKVEMPIFTGIDPDSWLFRADR 189

Query: 86  YFQIHKLTEEVKMTVAVISFKVTTLDWYRVKEERELCVYCNN--------FDLLDKGRYE 145
           YF+IH L++  K+TVAVISF    LDWYR +EERE     ++        F  +  G   
Sbjct: 190 YFKIHNLSDSEKLTVAVISFDGPALDWYRSQEERETFKGWHDLKQKMLVRFRSIRDGTLV 249

Query: 146 VNSLQLNKKSTVEEYINIFDKLVAPLPHLSNEILENTFMNGLILWVRAEVECWESVGLAQ 205
              L + +++TVEEY N FDK +AP+  L   +LE TFMNGL  W+++EVE WE VGLAQ
Sbjct: 250 GRFLTIKQETTVEEYRNRFDKFLAPVAFLQPVVLEETFMNGLSPWLKSEVETWEPVGLAQ 309

Query: 206 ------RVENREVATIDKNKGLNVRLNPKGTVPIA----AKEMPKITELV----PMQTIT 265
                 ++ENRE+  + K  GL+   + K     A        P I        PM+TIT
Sbjct: 310 MMKMALKIENREM--VRKECGLSSAYDSKAAQRAANTRNINSSPMIENTTAGGWPMRTIT 369

Query: 266 LRGVNPTGVQR---------------------------KY------------ELRVLLVQ 305
           LR V  TG  R                           KY            ELR+LLV+
Sbjct: 370 LREV-ATGENRREGPTKRLTDAEFQARREKGLCFRCGEKYHAGHRCKTKDSKELRMLLVK 429

[Close]

BLAST of PI0027161 vs. NCBI nr
Match: KAA0049776.1 (Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 173.3 bits (438), Expect = 3.1e-39
Identity = 135/344 (39.24%), Postives = 179/344 (52.03%), Query Frame = 0


Query: 26  GDSSGSKSEKETLAGTSSITNEVARTGVGNETIERSKFKKVEMPIFNGIDPDSWLFKVER 85
           G SS ++ E+ T+   S+  N   +T  G   ++RSKFKKVEMPIF GIDPDSWLF+ +R
Sbjct: 70  GSSSKTQMEETTITAVSNDPNIEGKTEEG-PALDRSKFKKVEMPIFTGIDPDSWLFRADR 129

Query: 86  YFQIHKLTEEVKMTVAVISFKVTTLDWYRVKEERELCVYCNN--------FDLLDKGRYE 145
           YF+IH L++  K+TVAVISF    LDWYR +EERE     ++        F  +  G   
Sbjct: 130 YFKIHNLSDSEKLTVAVISFDGPALDWYRSQEERETFKGWHDLKQKMLVRFRSIRDGTLV 189

Query: 146 VNSLQLNKKSTVEEYINIFDKLVAPLPHLSNEILENTFMNGLILWVRAEVECWESVGLAQ 205
              L + +++TVEEY N FDK +AP+  L   +LE TFMNGL  W+++EVE WE VGLAQ
Sbjct: 190 GRFLTIKQETTVEEYRNRFDKFLAPVAFLQPVVLEETFMNGLSPWLKSEVETWEPVGLAQ 249

Query: 206 ------RVENREVATIDKNKGLNVRLNPKGTVPIA----AKEMPKITELV----PMQTIT 265
                 ++ENRE+  + K  GL+   + K     A        P I        PM+TIT
Sbjct: 250 MMKMALKIENREM--VRKECGLSSAYDSKAAQRAANTRNINSSPMIENTTAGGWPMRTIT 309

Query: 266 LRGVNPTGVQR---------------------------KY------------ELRVLLVQ 305
           LR V  TG  R                           KY            ELR+LLV+
Sbjct: 310 LREV-ATGENRREGPTKRLTDAEFQARREKGLCFRCGEKYHAGHRCKTKDSKELRMLLVK 369

[Close]

BLAST of PI0027161 vs. NCBI nr
Match: KAA0049630.1 (Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 173.3 bits (438), Expect = 3.1e-39
Identity = 135/344 (39.24%), Postives = 179/344 (52.03%), Query Frame = 0


Query: 26  GDSSGSKSEKETLAGTSSITNEVARTGVGNETIERSKFKKVEMPIFNGIDPDSWLFKVER 85
           G SS ++ E+ T+   S+  N   +T  G   ++RSKFKKVEMPIF GIDPDSWLF+ +R
Sbjct: 130 GSSSKTQMEETTITAVSNDPNIEGKTEEG-PALDRSKFKKVEMPIFTGIDPDSWLFRADR 189

Query: 86  YFQIHKLTEEVKMTVAVISFKVTTLDWYRVKEERELCVYCNN--------FDLLDKGRYE 145
           YF+IH L++  K+TVAVISF    LDWYR +EERE     ++        F  +  G   
Sbjct: 190 YFKIHNLSDSEKLTVAVISFDGPALDWYRSQEERETFKGWHDLKQKMLVRFRSIRDGTLV 249

Query: 146 VNSLQLNKKSTVEEYINIFDKLVAPLPHLSNEILENTFMNGLILWVRAEVECWESVGLAQ 205
              L + +++TVEEY N FDK +AP+  L   +LE TFMNGL  W+++EVE WE VGLAQ
Sbjct: 250 GRFLTIKQETTVEEYRNRFDKFLAPVAFLQPVVLEETFMNGLSPWLKSEVETWEPVGLAQ 309

Query: 206 ------RVENREVATIDKNKGLNVRLNPKGTVPIA----AKEMPKITELV----PMQTIT 265
                 ++ENRE+  + K  GL+   + K     A        P I        PM+TIT
Sbjct: 310 MMKMALKIENREM--VRKECGLSSAYDSKAAQRAANTRNINSSPMIENTTAGGWPMRTIT 369

Query: 266 LRGVNPTGVQR---------------------------KY------------ELRVLLVQ 305
           LR V  TG  R                           KY            ELR+LLV+
Sbjct: 370 LREV-ATGENRREGPTKRLTDAEFQARREKGLCFRCGEKYHAGHRCKTKDSKELRMLLVK 429

The following BLAST results are available for this feature:

BLAST of PI0027161 vs.


Match Name	E-value	Identity	Description

BLAST of PI0027161 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3DI73	6.8e-40	39.24	Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]
A0A5A7SIV7	6.8e-40	39.24	Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2...	[more]
A0A5D3CXB1	1.5e-39	39.24	Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]
A0A5A7U2S1	1.5e-39	39.24	Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2...	[more]
A0A5A7U6J3	1.5e-39	39.24	Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2...	[more]

BLAST of PI0027161 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK23090.1	1.4e-39	39.24	Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0025132.1	1.4e-39	39.24	Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa]	[more]
TYK15990.1	3.1e-39	39.24	Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0049776.1	3.1e-39	39.24	Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0049630.1	3.1e-39	39.24	Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa]	[more]

BLAST of PI0027161 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 15..46

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
PI0027161.1	PI0027161.1	mRNA