PI0026311 (gene) Melon (PI 482460) v1

Overview
NamePI0026311
Typegene
OrganismCucumis metuliferus (Melon (PI 482460) v1)
DescriptionRNase H domain-containing protein
Locationchr08: 7236666 .. 7237692 (-)
RNA-Seq ExpressionPI0026311
SyntenyPI0026311
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAATTTGGATTGTCTTCGGGTGTTTCTTACTTAGGAGGAATTTCGCTTGTATTGGGGTTGCCCATGGGAAGTTTCCAGACTGAGGATGCGTAGATGTGGCATTTTGATTCTAAAGGGTTTTATTCTGTTAAGAGTGGTTATCGAATTTTTATGGAGCACAAACATTCTGCTGGGTGTTCCGAGTTGTTGCAGGTGAGGAGATGGTGGAAGCAACTTTGGAGTTTGAAGATTCCTAATAAAGTTAAAAAATTTATTTGGCGTGCCTTCCATCCGGTTCTTTCTATTATGACAAGTCTTGTGGATCGTAGAGTGCCTGTTTCCTCTTATTGTCTTTTTGTAGAAAGCATCTTGAAATTATTCTGCATGTGCTTCTTTGTTGTAAAAGAGCGCAAGAAATTTGGTCTCTTTTGCTACCTCATGTTTTGTAGGTGGGGAAAGGGATTGGGGACTTAGCTGAGCTTTGTTTTGTGTTGGTGGATTCCCTTTCCACTTTGGATTTGGTGATCTGGTGCATTGAGTGTTGGGGTATTTAGAATGATCGAATGGTTTACGTATGCAGGGTGTAATGCCTGAAGCTGTTTTAATATGCCATTGGTTACATAATTATTCGCAGGAATTCCAACATCTCGTTTGCTAGCTTCCTCGCATTGGTGTTTCTGATCCGCGACAGTTTATTAGGCTTCCGAGACATGGTTGTGGCATGTTTGTGGATGCATCCTGCTCGGCGTTTCGGGGTGTGACGAGGCTTGGTGTAGTCATAGTTGATGAGCATGGTTCTATTGTGGGGGCGACGACTAAGTCAGCTTCAGGCCTGTATGCTCCTTTATTGGCTGAAATGTCGGCGATTAAAAAGGGAGTACGGTTTGCTTCTTGCTTCTGGGGTGTTTTCTCTAATTGTCATAATGCAGTCAGATTACTCTGTGGGCTTTCTGATTCTATTGCTGAAGTTGGGGTCTTTGTCGCTGACATCAAAGCTATGTTGTCTGCATTCCGGGGTATGGAGTTTCACTATATTGGCAAATAA

mRNA sequence

ATGGAATTTGGATTGTCTTCGGGTGTTTCTTACTTAGGAGGAATTTCGCTTAGTGGTTATCGAATTTTTATGGAGCACAAACATTCTGCTGGGTGTTCCGAGTTGTTGCAGGTGAGGAGATGGTGGAAGCAACTTTGGAGTTTGAAGATTCCTAATAAAGTTAAAAAATTTATTTGGCGTGCCTTCCATCCGGTGGGGAAAGGGATTGGGGACTTAGCTGAGCTTTGTTTTGTGTTGGTGGATTCCCTTTCCACTTTGGATTTGCTTCCTCGCATTGGTGTTTCTGATCCGCGACAGTTTATTAGGCTTCCGAGACATGGTTGTGGCATGTTTGTGGATGCATCCTGCTCGGCGTTTCGGGGTGTGACGAGGCTTGGTGTAGTCATAGTTGATGAGCATGGTTCTATTGTGGGGGCGACGACTAAGTCAGCTTCAGGCCTGTATGCTCCTTTATTGGCTGAAATGTCGGCGATTAAAAAGGGAGTACGGTTTGCTTCTTGCTTCTGGGGTGTTTTCTCTAATTGTCATAATGCAGTCAGATTACTCTGTGGGCTTTCTGATTCTATTGCTGAAGTTGGGGTCTTTGTCGCTGACATCAAAGCTATGTTGTCTGCATTCCGGGGTATGGAGTTTCACTATATTGGCAAATAA

Coding sequence (CDS)

ATGGAATTTGGATTGTCTTCGGGTGTTTCTTACTTAGGAGGAATTTCGCTTAGTGGTTATCGAATTTTTATGGAGCACAAACATTCTGCTGGGTGTTCCGAGTTGTTGCAGGTGAGGAGATGGTGGAAGCAACTTTGGAGTTTGAAGATTCCTAATAAAGTTAAAAAATTTATTTGGCGTGCCTTCCATCCGGTGGGGAAAGGGATTGGGGACTTAGCTGAGCTTTGTTTTGTGTTGGTGGATTCCCTTTCCACTTTGGATTTGCTTCCTCGCATTGGTGTTTCTGATCCGCGACAGTTTATTAGGCTTCCGAGACATGGTTGTGGCATGTTTGTGGATGCATCCTGCTCGGCGTTTCGGGGTGTGACGAGGCTTGGTGTAGTCATAGTTGATGAGCATGGTTCTATTGTGGGGGCGACGACTAAGTCAGCTTCAGGCCTGTATGCTCCTTTATTGGCTGAAATGTCGGCGATTAAAAAGGGAGTACGGTTTGCTTCTTGCTTCTGGGGTGTTTTCTCTAATTGTCATAATGCAGTCAGATTACTCTGTGGGCTTTCTGATTCTATTGCTGAAGTTGGGGTCTTTGTCGCTGACATCAAAGCTATGTTGTCTGCATTCCGGGGTATGGAGTTTCACTATATTGGCAAATAA

Protein sequence

MEFGLSSGVSYLGGISLSGYRIFMEHKHSAGCSELLQVRRWWKQLWSLKIPNKVKKFIWRAFHPVGKGIGDLAELCFVLVDSLSTLDLLPRIGVSDPRQFIRLPRHGCGMFVDASCSAFRGVTRLGVVIVDEHGSIVGATTKSASGLYAPLLAEMSAIKKGVRFASCFWGVFSNCHNAVRLLCGLSDSIAEVGVFVADIKAMLSAFRGMEFHYIGK
Homology
BLAST of PI0026311 vs. ExPASy TrEMBL
Match: A0A5A7VQ24 (Adenylate kinase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold577G00510 PE=3 SV=1)

HSP 1 Score: 89.0 bits (219), Expect = 2.7e-14
Identity = 70/221 (31.67%), Postives = 92/221 (41.63%), Query Frame = 0

Query: 18  SGYRIFMEHKHSAGCSELLQVRRWWKQLWSLKIPNKVKKFIWRAFHPV------------ 77
           SGYR+FM H +  GCS+    + WW +LW L IP K+K  +WRAFH +            
Sbjct: 81  SGYRLFMFHHNMIGCSDSSVTKHWWIRLWKLNIPAKIKILMWRAFHMILPVLTCLVDRRM 140

Query: 78  ---------GKG-------------------------------IGDLAELCFVLVDSLST 137
                    GK                                  D ++ C VL DSLS 
Sbjct: 141 DISPLCPYCGKHPETITQVVFGCRLAKELWKCFLPVVLSGRNYYFDFSDFCVVLADSLSP 200

Query: 138 LDL----LPRIGVSDPRQFIRLPRHGCGMF--VDASC----SAFRG----------VTRL 167
           LD     +   G+ D     R+    CG+   VDA C    S  RG          +  +
Sbjct: 201 LDFSLWCIGCWGLWDDHNDFRV----CGVVLDVDAKCWWLSSYVRGNGSTSSPGWNIWGV 260

BLAST of PI0026311 vs. ExPASy TrEMBL
Match: A0A803NLN2 (Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 3.4e-09
Identity = 52/201 (25.87%), Postives = 86/201 (42.79%), Query Frame = 0

Query: 18  SGYRIFMEHKHSAGCSELLQVRRWWKQLWSLKIPNKVKKFIWRAFHPVGKGIGDLAELCF 77
           SGYR+    +     S ++   RWW ++W LK+P KVK F+W+  H              
Sbjct: 123 SGYRVAAALREELHHSNVVDSERWWTEMWRLKVPPKVKHFVWKVCH-------SWLPTYA 182

Query: 78  VLVDSLSTLDLLPRIGVSDPRQFIRLPRHGC--GMFVDASCSAFRGVTRLGVVIVDEHGS 137
           VL         L R   S   + +     GC  G+ V   C  +  + + G+V  +E+G 
Sbjct: 183 VLSQHKVAFSPLCRCCSSGKNEDVGHMLWGCSPGVRVWKRCELWSDIKK-GLVTRNENGQ 242

Query: 138 IVGATTKSASGLYAPLLAEMSA----IKKGVRFASCFWGVFSNCHNAVRLLCGLSDSIAE 197
            + AT    SG   PL AE+ A    I  G++     + V S+C  A+ L+  + +   +
Sbjct: 243 SIFATVTPRSGAVTPLAAELEAILDGISAGIQRGLMRFTVESDCLQAINLIEKVHEGCRD 302

Query: 198 VGVFVADIKAMLSAFRGMEFH 213
           V   + +I+ +L +      H
Sbjct: 303 VNGLIFEIRKLLQSHNAFARH 315

BLAST of PI0026311 vs. ExPASy TrEMBL
Match: A0A803QNQ9 (Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1)

HSP 1 Score: 70.9 bits (172), Expect = 7.6e-09
Identity = 49/195 (25.13%), Postives = 81/195 (41.54%), Query Frame = 0

Query: 29   SAGCSELLQVRRWWKQLWSLKIPNKVKKFIWRAFHPVGKGIGDLAELCFVLVDSLSTLDL 88
            S G S     +RWW  +WS  IP K+K F+W+AFH        +      L +     D 
Sbjct: 877  SPGPSNPATYKRWWTTVWSSNIPPKIKHFVWKAFH-------HILPSSLNLFNRQEYRDA 936

Query: 89   LPRIGVSDPRQF-----IRLPRHGCGMFVDASCSAFRGVTRLGVVIVDEHGSIVGATTKS 148
              RI  S          + +P     + VDA+ S        G ++ D  G+++ + T  
Sbjct: 937  QDRISTSSHTSHHLSPPVPVPDDTYRLSVDAALSPSTNQHGYGALVTDSKGTVIASLTAP 996

Query: 149  ASGLYAPLLAEMSAIKKGVRFASC----FWGVFSNCHNAVRLLCGLSDSIAEVGVFVADI 208
            +    AP+ AE  A+ + + +          + S+C + V  +   S   + +   +A I
Sbjct: 997  SHTALAPIFAEAEALHRALLWCQAVHFPIAVITSDCQSLVHRIHNFSPDRSALSGLLALI 1056

Query: 209  KAMLSAFRGMEFHYI 215
             + LS+F G   HYI
Sbjct: 1057 VSSLSSFPGAVLHYI 1064

BLAST of PI0026311 vs. ExPASy TrEMBL
Match: A0A803PY89 (Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 9.9e-09
Identity = 51/202 (25.25%), Postives = 90/202 (44.55%), Query Frame = 0

Query: 18  SGYRIFMEHKHSAGCSELLQVRRWWKQLWSLKIPNKVKKFIWRAFHPVGKGIGDLAELCF 77
           SGY++   H     CS    ++ WWK +W  K+  K+K FIWR F+   + +    EL  
Sbjct: 139 SGYKLRFTHLDIVECSNKSTLKAWWKFVWGSKLTPKMKNFIWRVFN---QWLPTKVELTK 198

Query: 78  VLVDSLSTLDLLPRIGVSDPRQFIRLPRHGCGMFVDASCSAFRGVTRLGVVIVDEHGSIV 137
            ++ S    D+ P+     P      P     + +DAS    +    L  +I D +G ++
Sbjct: 199 QVMQSRPEQDVRPKRSWQPP------PPDHVLINIDASVVQDKPGCGLSAIIRDHNGQLI 258

Query: 138 GATTKSASGLYAPLLAEMSAIKKGVRFASCFWG-----VFSNCHNAVRLLCGLSDSIAEV 197
            A +    G+ +  LAE  AI+ G+  A   W      V ++C   V  L     S+++ 
Sbjct: 259 VAESLFIPGMLSIQLAEAYAIRMGLLLAQ-KWSLKKVHVSADCLGVVSALQASPTSLSDW 318

Query: 198 GVFVADIKAMLSAFRGMEFHYI 215
           G+ + +I  +   F  ++F ++
Sbjct: 319 GMIIQEILMLQKHFTFVQFSFV 330

BLAST of PI0026311 vs. ExPASy TrEMBL
Match: A0A803QHJ7 (Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 6.4e-08
Identity = 57/246 (23.17%), Postives = 94/246 (38.21%), Query Frame = 0

Query: 18  SGYRIFMEHKHSAGCSELLQVRRWWKQLWSLKIPNKVKKFIWRAFH-------------- 77
           SGYR+  E K     S+     +WW++LW LKIP K+K F+W+  H              
Sbjct: 456 SGYRMACELKAERQQSDDHLAVQWWRKLWRLKIPQKIKVFVWKLAHGWLPTSTVLAKRHV 515

Query: 78  ----------PVGKGI------------------------------GDLAELCFVLVDSL 137
                     P    I                               ++ E C+ L+   
Sbjct: 516 STTGGCSRCSPHNSEIIFHAFWECKKSKSLWNTRNACIHGGFVPQPAEMVEWCYKLLGDF 575

Query: 138 STLDLLPRIGVSDPRQFIRLPRHG-CGMFVDASCSAFRGVTRLGVVIVDEHGSIVGATTK 197
                 P+  +       ++PRHG   + VD       G + LG VI  E G ++ A++ 
Sbjct: 576 QGGGCRPQEAMRREEGVWKVPRHGEVKINVDTGVKKGAGYSGLGCVIRGEQGDVLFASST 635

Query: 198 SASGLYAPLLAEMSAIKKGVRFA----SCFWGVFSNCHNAVRLLCGLSDSIAEVGVFVAD 205
           +    Y+PL  E+ AI KG++         + + S+C  A++L+    D   +V   +  
Sbjct: 636 AIPREYSPLQLELMAILKGIQAGLQRHIMHFSIESDCLEAIQLIQKKEDGCRDVDCLLEQ 695

BLAST of PI0026311 vs. NCBI nr
Match: KAA0067681.1 (UMP-CMP kinase isoform X1 [Cucumis melo var. makuwa] >TYK23685.1 UMP-CMP kinase isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 89.0 bits (219), Expect = 5.6e-14
Identity = 70/221 (31.67%), Postives = 92/221 (41.63%), Query Frame = 0

Query: 18  SGYRIFMEHKHSAGCSELLQVRRWWKQLWSLKIPNKVKKFIWRAFHPV------------ 77
           SGYR+FM H +  GCS+    + WW +LW L IP K+K  +WRAFH +            
Sbjct: 81  SGYRLFMFHHNMIGCSDSSVTKHWWIRLWKLNIPAKIKILMWRAFHMILPVLTCLVDRRM 140

Query: 78  ---------GKG-------------------------------IGDLAELCFVLVDSLST 137
                    GK                                  D ++ C VL DSLS 
Sbjct: 141 DISPLCPYCGKHPETITQVVFGCRLAKELWKCFLPVVLSGRNYYFDFSDFCVVLADSLSP 200

Query: 138 LDL----LPRIGVSDPRQFIRLPRHGCGMF--VDASC----SAFRG----------VTRL 167
           LD     +   G+ D     R+    CG+   VDA C    S  RG          +  +
Sbjct: 201 LDFSLWCIGCWGLWDDHNDFRV----CGVVLDVDAKCWWLSSYVRGNGSTSSPGWNIWGV 260

BLAST of PI0026311 vs. NCBI nr
Match: XP_030500352.1 (uncharacterized protein LOC115715819 [Cannabis sativa])

HSP 1 Score: 65.9 bits (159), Expect = 5.0e-07
Identity = 58/205 (28.29%), Postives = 86/205 (41.95%), Query Frame = 0

Query: 41  WWKQLWSLKIPNKVKKFIWRAFH---PVG------KGIGDLAELCFVLVDSL-------- 100
           WW  LWSL +P K+K FIWRAF+   PV       K I D     F L  SL        
Sbjct: 402 WWNFLWSLSLPQKIKIFIWRAFNDALPVATALVKRKIITDSTCSLFHLSTSLGNCWCSSS 461

Query: 101 ---------STLDLLPRIGVSDPRQFIRLPRHG-CGMFVDASCSAFRGVTRLGVVIVDEH 160
                    +T   LP+I  + P      P  G   M VDA+  + R +T +G +I   +
Sbjct: 462 APDPNSLAAATTASLPQISPAAPLMPWTPPPLGMLKMNVDAAVDSTRKITGIGALIRSSN 521

Query: 161 GSIVGATTKSASGLYA----PLLAEMSAIKKGVRFASCFWGVFSNCHNAVRLLCGLSDSI 215
           G +V A +K   G YA      +A    +   ++       V ++       LC  S +I
Sbjct: 522 GEVVAAISKPILGCYASHEMEAIAMFHCLNWAIQLQLLVSLVETDALRVSNALCKYSSAI 581

BLAST of PI0026311 vs. NCBI nr
Match: KAA0052791.1 (14-3-3-like protein GF14 kappa [Cucumis melo var. makuwa])

HSP 1 Score: 62.0 bits (149), Expect = 7.3e-06
Identity = 45/104 (43.27%), Postives = 52/104 (50.00%), Query Frame = 0

Query: 107 GCGMFVD----ASC----SAFRGVTRLGVVIVDEHGSIVGATTKSASGLYAPLLAEMSAI 166
           G G FV+    A C    SA RGV  LGVV+VDEHGSI+GAT+                 
Sbjct: 96  GLGSFVEVVVVAFCGHVLSAARGVNGLGVVVVDEHGSILGATSNCD-------------- 155

Query: 167 KKGVRFASCFWGVFSNCHNAVRLLCGLSDSIAEVGVFVADIKAM 203
                         ++C     LLCG SDSIAEVGV V+DIKAM
Sbjct: 156 --------------NDCLTVSGLLCGNSDSIAEVGVLVSDIKAM 171

BLAST of PI0026311 vs. NCBI nr
Match: XP_030508875.1 (uncharacterized protein LOC115723521 [Cannabis sativa])

HSP 1 Score: 61.6 bits (148), Expect = 9.5e-06
Identity = 54/193 (27.98%), Postives = 78/193 (40.41%), Query Frame = 0

Query: 41  WWKQLWSLKIPNKVKKFIWRAFHPV---------------------GKGIGDLAELCFVL 100
           WWK LW+LKIP K+K F W+AF+ +                     G GI        +L
Sbjct: 454 WWKFLWTLKIPPKIKHFTWKAFNHLLPCALNLFHKHAIPSACCSHCGGGIESGLSEAQIL 513

Query: 101 VDSLSTLDLLPRIGVSDPRQFIRLPRHGCGMFVDASCSAFRGVTRLGVVIVDEHGSIVGA 160
              L  L   P    S       L      +FVDA+ S     T LG+V V     I   
Sbjct: 514 STCLLPLKPFPAASGS------VLTPSTTALFVDAALSQNASATGLGLVFVQGVSHIHQF 573

Query: 161 TTKSASGLYAPLLAEMSAIKKGVRFASCFWG------VFSNCHNAVRLLCGLSDSIAEVG 207
            + + SG  +P+ AE  A+ +G+++  C         +FS+C N V  + G     + + 
Sbjct: 574 ASINKSGASSPIFAEAQALAEGIQW--CLSSNLKPDYIFSDCLNLVSKVKGNWHDHSPLS 633

BLAST of PI0026311 vs. NCBI nr
Match: XP_030509336.1 (uncharacterized protein LOC115724021 [Cannabis sativa])

HSP 1 Score: 58.9 bits (141), Expect = 6.2e-05
Identity = 52/220 (23.64%), Postives = 90/220 (40.91%), Query Frame = 0

Query: 18  SGYRIFMEHKHSAGCSELLQVRRWWKQLWSLKIPNKVKKFIWRAFH---PVGKGIGDLAE 77
           SGY +  + + S   +       WWK  W+L++P+KVK F+W+AFH   P+         
Sbjct: 759 SGYHLANDLEDSDLSNSSNNQHTWWKYFWNLQLPSKVKIFVWKAFHCAIPIALPAVSARS 818

Query: 78  L------------------CFVLVDSLSTLDLLPRIGVSDPRQFIRLPRHGCGMFVDASC 137
           L                  CF          +  + G+S  + + +   + C     ++ 
Sbjct: 819 LILQHVAFVRMPGNRLNMPCFYANMLKRNNFIHGKPGLSPTQLWAKSVAYFCNFQQQSTS 878

Query: 138 SA--------FRGVTRLGVVIVDEHGSIVGATTKSASGLYAPLLAEMSAIKKGVRFAS-C 197
           S         FR    +G++I +  G +V A +K  +G   P   E  A+  G+ +A+ C
Sbjct: 879 SKSIRDSTGYFRNKIGVGIIIRNSSGQVVAAYSKPLTGRLKPQEMEAKALLMGINWAARC 938

Query: 198 FWGV---FSNCHNAVRLLCGLSDSIAEVGVFVADIKAMLS 205
              +    S+    V  +  +S++I+  G  V DIK  LS
Sbjct: 939 NLSINLFESDSLILVNSINSISNAISSFGDLVLDIKNRLS 978

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5A7VQ242.7e-1431.67Adenylate kinase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold577G005... [more]
A0A803NLN23.4e-0925.87Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1[more]
A0A803QNQ97.6e-0925.13Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1[more]
A0A803PY899.9e-0925.25Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1[more]
A0A803QHJ76.4e-0823.17Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
KAA0067681.15.6e-1431.67UMP-CMP kinase isoform X1 [Cucumis melo var. makuwa] >TYK23685.1 UMP-CMP kinase ... [more]
XP_030500352.15.0e-0728.29uncharacterized protein LOC115715819 [Cannabis sativa][more]
KAA0052791.17.3e-0643.2714-3-3-like protein GF14 kappa [Cucumis melo var. makuwa][more]
XP_030508875.19.5e-0627.98uncharacterized protein LOC115723521 [Cannabis sativa][more]
XP_030509336.16.2e-0523.64uncharacterized protein LOC115724021 [Cannabis sativa][more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002156Ribonuclease H domainPFAMPF13456RVT_3coord: 112..214
e-value: 5.7E-9
score: 35.8

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
PI0026311.1PI0026311.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0004523 RNA-DNA hybrid ribonuclease activity
molecular_function GO:0016740 transferase activity