PI0024429 (gene) Melon (PI 482460) v1

Overview


Name	PI0024429
Type	gene
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	Reverse transcriptase
Location	chr09: 21838325 .. 21844625 (-)
RNA-Seq Expression	PI0024429
Synteny	PI0024429

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTGGCCGTAAAGGAGGAATCCCTACCGTGGGGGACAACCGTGAGCAAGAAGAGGTGGAGGAGATCGCCACCCTCTCTCCAAGGACATCCACGGTACGCTTGCTGGCCGTCGAAGACTCCTTGGGAGATTTACACAAAAAGTTTGATAGAGTAATGGATACTTTGGAGACACTGACTCGAAGGATGGACGGACTACCGACTCCGGCAAGAATTGAAGCCAACGTAAATAATGATCGGAACGACGGAAACAGAGGAGGCCGACGAGCTCAAAGAAATTTTAGAACTTTGCCCAATCAAAGGAATGATCAAAGAAGGAGGCCAATGGAGAATCCGCTGCGATATGCCGATGATGATTCAATGGAAGAATATGAAGCTTGGCAAAATGGGCAAGAATGTGATTCTTCCAGCGGTGATGAGCAAGAAAATATTTGGAATGATAATGGAGATATTCGAATGAGACGAGTTTATAGAGGACATGAAGCACGAAGGGAAGTTCATCATGATTATAAGATGAAAATTGATCTTCCAACCTATGATGGTAAGCGTGATATTGAATCTTTTTTGGATTGGATTAAAAATACTGAAAATTTCTTCAATTATATGGATACTCCCAATAGAAAGAAAGTGCACTTGGTGGCCCTAAAGCTACGTGGAGGAGCTTCGGCATGGTGGGATCAGCTTGAAATAAACAAACAAAGATACGGCAAGCCACCTGTTCACTCATGGGAGAAGATGAAAAAACTGCTAAAGCACGTTTTTTACCTCCAAACTATGAACAAACGCTATATAATCAGTATCAAAACTGTCGCCAAGGAAGCAGATCAGTAATAGAATACATTGAAGAATTTTACAGACTAAGTGCTAGAACCAATCTGAGTGAGAATGAACAACATCAGATTGCACGGTTCATTGGTGGCCTAAGATTTGATATAAAGGAAAAGGTGAAATTACAGCCATTCCATTTTTTATCTGAAGCTATTTCTCTTGCAGAAACTGTAGAAGAAATGATGGCTGCAAGATCTAAGAATACTAACAGAAAGAACATATGGGAAACGAATTTTTCAAAGAAGCAAACTTACAGTAATAAAGCAAATGAGCAACCTTCAACATCTATTGCAGAAAAAAGCAAAGATGTTGTAGCACAGAAGGCAGCCAAGAAGAAAGAAATTGTGGGCAAAGGAAAGGTTCAGAATAATTACAATTGGCCATCATTAGGCAAGTGTTTTAAGTGTGGCCAAACTGGTCAAGAGTATGATTCAGCAAGTGATGATAGCAAAACAGTGGAAGAAGAAACCGAGTTAATTGAAGCTGATGATGGTGACAGGATATCCTGCGTTATTCAAAGAGTCCTAATTACCCTAAAGAAGAAACCAATCCTCAACGCCACTGTTTGTTCAAAACCAGATGCACGATCAATGGGAAGGTGTGTGACGTGATTATTAACAGCGGAAGCAGTGAGAATTTCATAGCAAAGAGCTTGTAACCGCTCTAAATCTAAAGGCAGAAACACATCCTAATCCTTACAAGATTGGTTGGGTAAAGAAGGACGGAGAAACTTTAGTAAGTGAGATTTGCATCGTACCACTTTCCATTGGAAGTGGATACAAAGATCAAAATGTTTGCGATGTAATAGACATGGACGTATGTCATTTGCTCCTAGGAAGACCATGGCAACACGACACTCAAACCTTGCATAAGGGGAGAGAAAATATCTATGAGTTCTATTGGATGGGGAAGAAGATTGTTCTACTTCCCCTATCAAAAAATAATGAAGGAGCAAAGCATATGAAGACTAAGGGGCAACTATTTACCACTGTCAGTGGAAAGAAATTGATCAGTGAAAGAGAAAGAGACATCCTAGGGCTGGTTGTTGTTGATAAGTTCATAGGAGGAGAACTGGGAATTATGGAACCTGAGTTACAACAATTACTTGCTGAATTTCCTCACTTGAGAAAAGAACCACATGGCTTACCACCTTTACGAGATATTCAGCACCAAATAGACTTGATTCCAGGAGCATCTTTGCCGAATTTGGCCCACTATCAATGAGTGCTCATAAATATCAGATTCTTCGTGAACATATTGAGGAACTATTGAAGAAAGGACACATTAAGCCAAGTCTAAGCCCCTGTGCAGTACCAGCTCTACTCACACCTAAGAAAGATGGAAGTTGGAGGGTGTGTGTAGACAGCAGAGCAATTAATCGAATAACTATAAAATACAGATTCCCTATTCCTCGAATTGGTGATCTTTTAGACCAGTTGGGTAAGGCTAATATCTTTTCAAAGATTGATCTAAAAAGTGGCTACCATCAGATACGAATTAGACCGGGAGATGAATGGAAAACAGCATTTAAAACTAATGAGGGCTTGTTTGAATGGATGGTTATGCCATTTGGACTATCCAACGCACCCAGCACCTTCATGAGATTGATGAATCAGGTGCTCCAACCTTTCCTCAATAAATTTATAGTAGTTTACTTTGATGATATACTTGTTTACAGCAGTAGAAAGGATGAACACATGTTGCATCTCAGAAAATATTTCAAGTGCTGACTGAAACAGAATTATATATCAATCAGAAAAATGCATCTTCCTAAAGGAAGAAATTTCTTTCCTTGGGTTCATCATCAAAGAAGGGGAGATCAGAATGGAGCCTAAGAAAATTGAAGCAATAAGAACTTGGCCAATCCCAGCTTCTATCAAAGAAATCCAAGCCTTTCTTGGATTAGCTTCTTTTTACAGGAAGTTCATAAAGAATTTCAGTTCTATTGTTGCTCCACTAACCGATTGTTTAAAGAAAGGAAATTTAAGTGGACTTCACAGCAACAAGAAAGCTTTGAAAACATCAAGAAGAAACTTACTTCCAGCCCCATTTTACAACTTCCAGACTTCACTTCACCCTTTGAAGTTGCAGTCGACGCTTGTGGAATGGGAATAGAGCTGTTCTATCTCAAAAAGGACACCCGGTTGAATATTTTAGTGAAAAACTCAGCATATCTAGACAAGCATGGAGCACATATGAGCAGGAATTGTATGCCTTGATCCGAGCACTAAAACAGTGGGAACATTACCTACTGTCTAGAGAATTTGTCCTCTTAACCGATCACTTTTCACTAAAATATCTTCACTCCCAAAAAAACATCAGCAGGATGCACGCTCGATGGATCTCCTTCCTACAGAGATTTGATTTTGTTATCAAATATCAGGCCGGAAAAGAAAACAAGGTGGCTGACGCTCTTAGTAGAAAGAATTCCCTCCTTACATTGCTATCTTCAGAAATCACAGCCTTTAAACATCTCCCTGATCTTTATGAAGAAGACATTGACTTTGCAGAAACTTGGTATAAATGCAACAATTATCTAAAGGCTGATGATTATCATATTGTAGAGGGATTTCTCTTTAAAGGTGAACAACTGTGCATGCCGCACACCTCCCTACGAGAAGCATTACTTAAAGAAGCTCATTCAGGAGGCTTATCCAGCCACTTTGGCCAAGATAAAACGTATGATTTAGTATCCAAAAGATACTATTGGCCACAATTAAGAAGGGATTCCAATAATTTTGTCAAGAGATGCTCCATTTGTCAAAAGCAAAGGGATCAAGCACTAATGCCGGCCTATACTGCCCGTTACCTATCCCAAAATCCATATGGGAAGATCTTTTAATTGATTTCGTGCTTGGCCTCCCTAAGACTCAAAGAAACTATGAATCTGTGATGGTTGTAGTAGATCGGTTCAGTAAAATGACCCATTTTGTTGCTTGTAAGAAAACAAACGATGCTATATATATTGCTAATCTCTTCTTTAGAGAGATAGTGCGATTACATGGGATTCCTAAGACAATCGTCTCTGACAGAGATGTAAAATTCCTAAGTCATTTCTGGAGAACCTTATGGAAAAAGCTTGATACTACTCTCAAATATAGCACCATAGCTCATCCTCAAACAGATGACCAAACAGAGGTGACTAACAGAACATTAGGGAATCTCATAAGATGCCTTAGTGGATCTAAGCCTAAGCAATGGGATCTATCACTAGCACAAGCAGAGTTCGCATTTAACAACATGAGAAACCGGTCAACAAACAAATGCCCCTTTGAAATAGTCTATACTAAACAGCCAAGGTTGACCTTTGACCTTGCTTCCCTCCCTACAACAGTTGACATTAACCAAGAAGCTGAAAGCATGGTAGAAAAACTTGAACAACTACACAAGGAAGTCACCGATCACCTCATGAAAACTACAAATTCCTACAAGAAGACAGCTGATATGAAAAGAAGGCAAGCTAAATTTGCTAAGGGAGACCTAGTAATGGTGCACCTAAAAAAGAGTAGATTCCCATCCGGCACTTATAACAAATTGAAAGATAGACAAATCGGCCCAGTACGAATCCTAGAAAAATATGGAGAAAACGCTTTCAAAGTCGAACTACCACCAGATATGAATATACACCCAGTATTCAACGTTGCCGATTTGAAGCCTTACTACGCACCGGACGAGTTCAAGCTTGCACACTGATGGACTTCGGGACAAGTCCATCCTAAGGGGGGTAGAATGATGTAAATAATAGTATAGCAGAAACTGTATAACTGTTAAACAGAAACTGTTGCCATTAAACAGAAACTGTTAGGAAAATCTGTTAAAGAAGCTAACTGATTAGTTACCCGACTGCCTAACCAACTTGTAACTACCCAATAACTACTTAAAACTCATCAATAAATACATGATATCTCAGCAAAAAGGGAGAGAATTCATTTGATAAAAATTCACAATTTGGAATCACACCAAAATATGAGCAAAAATTTTGGTTAACAGTAGAATAGGTTTATTGGGAAAAGGTGAATAAATACCGATGATATGGACATTTCTGCTTCAAGAATATATTCTCAAACAACAAGATACATTCTAATAATAATAATAGAAAAAATACACTTACTTGAAGGGACAAATGTAAGTTTTCTCTCCCTTTCTCACTTTTCTCTCTCCTCTTTTCTCTCTCCTCCTCCTCCCTCCCTTCAACATCATCGCCAGCCTATTACCCTCTCCAGTAGACACTACTCTACGTCAACTTGTACTTTGGAAATACCCTAGCAACCATTCTTACTTCACAAAGATGGAAGTAAAAAGCTGCAAAATCAACAACCTTTTTTTCTGCATTTGGCATGAAGATGAAGCTTTTCACATAGAAGATGTTGAAGCTAATATTATTATGTCAATATCAATCTTTCAACTTAGGTGGTTCATTGAAATGGTGAAAGAATTGAATAAGAATTCTCAAGAAGATTACTTCTATAAGAAAGAAAAGTTGAGAGTGGAAGGGTCGAAACTTCCAAATTCAGAACCAAAAGTGGGTGGGTTCTAAGATGCAATGCATGGCCTCGTAGAGGAGGGAAATCATTTATTCATATCCCCATCGGTGAAGATAAACACGGGTGGAAAAGTTTCGGAAAAATGTTGGGAGACTTCAAGGACAACCATGAATACAAATCTGGTTCTCTACCCAAATCATGTCCAACTCCATTAGGAAGCAGCCGAACAAAAGTATGAAAGGAAGCTATGCGGAGATAGCAAAATCAAAAGAGACATCCAAGAACTCTGTCTTCGATACCACAAAACAGAGTACAAGCAAATATTGGGTGATTAAGAATCCGGTAGTCTTAAGCTCAATGCTTGTGTAATGGAAAACTTCATCTGTTTAATCAAAAAAAAGAGGATGCTTCCAAGGTGAGAAACTTCAGGCCAATAAGTCTCACTACTTTGACTTACAAGCTGGTGGCAAAAGTATTGGCAAAAAGACTTAAAGAAGATTATGCCAAGCATTATTGATTCTCCTCAAAGCGCCTTTTTAGAAGAAGGCAAATTCTCGACCCCATTCTCATGCCAACGAAGTGCTGGAAGATTACAGAGCGAAAAAGAAGAAAGGGTGGCTGATTAAGCTGGACCTTGAAAAGCCTTTGATAAGGCCGATTGGGACTTTTTAGAAAAAGTAATGGTACAAAAAAAATTGATGGCAGATGAATAAAGTGGATAATGGGTTGTGTGCAAAATCCCAATTACTCAATCTTTATAAATGGCCGACCACGAGGCAGAATTCAAGCATCAAGAGGCCTCCGACAAGGAGACCCACTTTCCCATTTCTCTTCCTCCTAGAAAGTGAAGTTCTAAGAAGCCTAATCTCATTGATACATGCGAAGGGAATGTTTGATGGCTTTATTGTAGGCAAAGACAAGGTACATGTTTCCTTACTCCAGTTTGCTGATGATACACTAATATTCTGCAAAAATGATGAGGCAATGAT

mRNA sequence

ATGGCTGGCCGTAAAGGAGGAATCCCTACCGTGGGGGACAACCGTGAGCAAGAAGAGGTGGAGGAGATCGCCACCCTCTCTCCAAGGACATCCACGGTACGCTTGCTGGCCGTCGAAGACTCCTTGGGAGATTTACACAAAAAGTTTGATAGAGTAATGGATACTTTGGAGACACTGACTCGAAGGATGGACGGACTACCGACTCCGGCAAGAATTGAAGCCAACGTAAATAATGATCGGAACGACGGAAACAGAGGAGGCCGACGAGCTCAAAGAAATTTTAGAACTTTGCCCAATCAAAGGAATGATCAAAGAAGGAGGCCAATGGAGAATCCGCTGCGATATGCCGATGATGATTCAATGGAAGAATATGAAGCTTGGCAAAATGGGCAAGAATGTGATTCTTCCAGCGGTGATGAGCAAGAAAATATTTGGAATGATAATGGAGATATTCGAATGAGACGAGTTTATAGAGGACATGAAGCACGAAGGGAAGTTCATCATGATTATAAGATGAAAATTGATCTTCCAACCTATGATGGTAAGCGTGATATTGAATCTTTTTTGGATTGGATTAAAAATACTGAAAATTTCTTCAATTATATGGATACTCCCAATAGAAAGAAAGTGCACTTGGTGGCCCTAAAGCTACGTGGAGGAGCTTCGGCATGGTGGGATCAGCTTGAAATAAACAAACAAAGATACGGCAAGCCACCTGTTCACTCATGGGAGAAGATGAAAAAACTGCTAAAGCACGTTTTTTACCTCCAAACTATGAACAAACGCTATATAATCAGTATCAAAACTGTCGCCAAGGAAGCAGATCACAAAGAGCTTGTAACCGCTCTAAATCTAAAGGCAGAAACACATCCTAATCCTTACAAGATTGGTTGGGTAAAGAAGGACGGAGAAACTTTAGTAAGTGAGATTTGCATCGTGACTAACAGAACATTAGGGAATCTCATAAGATGCCTTAGTGGATCTAAGCCTAAGCAATGGGATCTATCACTAGCACAAGCAGAGTTCGCATTTAACAACATGAGAAACCGGTCAACAAACAAATGCCCCTTTGAAATAGCCGATTGGGACTTTTTAGAAAAAGTAATGGTACAAAAAAAATTGATGGCAGATGAATAAAGTGGATAATGGGTTGTGTGCAAAATCCCAATTACTCAATCTTTATAAATGGCCGACCACGAGGCAGAATTCAAGCATCAAGAGGCCTCCGACAAGGAGACCCACTTTCCCATTTCTCTTCCTCCTAGAAAGTGAAGTTCTAAGAAGCCTAATCTCATTGATACATGCGAAGGGAATGTTTGATGGCTTTATTGTAGGCAAAGACAAGGTACATGTTTCCTTACTCCAGTTTGCTGATGATACACTAATATTCTGCAAAAATGATGAGGCAATGAT

Coding sequence (CDS)

ATGGCTGGCCGTAAAGGAGGAATCCCTACCGTGGGGGACAACCGTGAGCAAGAAGAGGTGGAGGAGATCGCCACCCTCTCTCCAAGGACATCCACGGTACGCTTGCTGGCCGTCGAAGACTCCTTGGGAGATTTACACAAAAAGTTTGATAGAGTAATGGATACTTTGGAGACACTGACTCGAAGGATGGACGGACTACCGACTCCGGCAAGAATTGAAGCCAACGTAAATAATGATCGGAACGACGGAAACAGAGGAGGCCGACGAGCTCAAAGAAATTTTAGAACTTTGCCCAATCAAAGGAATGATCAAAGAAGGAGGCCAATGGAGAATCCGCTGCGATATGCCGATGATGATTCAATGGAAGAATATGAAGCTTGGCAAAATGGGCAAGAATGTGATTCTTCCAGCGGTGATGAGCAAGAAAATATTTGGAATGATAATGGAGATATTCGAATGAGACGAGTTTATAGAGGACATGAAGCACGAAGGGAAGTTCATCATGATTATAAGATGAAAATTGATCTTCCAACCTATGATGGTAAGCGTGATATTGAATCTTTTTTGGATTGGATTAAAAATACTGAAAATTTCTTCAATTATATGGATACTCCCAATAGAAAGAAAGTGCACTTGGTGGCCCTAAAGCTACGTGGAGGAGCTTCGGCATGGTGGGATCAGCTTGAAATAAACAAACAAAGATACGGCAAGCCACCTGTTCACTCATGGGAGAAGATGAAAAAACTGCTAAAGCACGTTTTTTACCTCCAAACTATGAACAAACGCTATATAATCAGTATCAAAACTGTCGCCAAGGAAGCAGATCACAAAGAGCTTGTAACCGCTCTAAATCTAAAGGCAGAAACACATCCTAATCCTTACAAGATTGGTTGGGTAAAGAAGGACGGAGAAACTTTAGTAAGTGAGATTTGCATCGTGACTAACAGAACATTAGGGAATCTCATAAGATGCCTTAGTGGATCTAAGCCTAAGCAATGGGATCTATCACTAGCACAAGCAGAGTTCGCATTTAACAACATGAGAAACCGGTCAACAAACAAATGCCCCTTTGAAATAGCCGATTGGGACTTTTTAGAAAAAGTAATGGTACAAAAAAAATTGATGGCAGATGAATAA

Protein sequence

MAGRKGGIPTVGDNREQEEVEEIATLSPRTSTVRLLAVEDSLGDLHKKFDRVMDTLETLTRRMDGLPTPARIEANVNNDRNDGNRGGRRAQRNFRTLPNQRNDQRRRPMENPLRYADDDSMEEYEAWQNGQECDSSSGDEQENIWNDNGDIRMRRVYRGHEARREVHHDYKMKIDLPTYDGKRDIESFLDWIKNTENFFNYMDTPNRKKVHLVALKLRGGASAWWDQLEINKQRYGKPPVHSWEKMKKLLKHVFYLQTMNKRYIISIKTVAKEADHKELVTALNLKAETHPNPYKIGWVKKDGETLVSEICIVTNRTLGNLIRCLSGSKPKQWDLSLAQAEFAFNNMRNRSTNKCPFEIADWDFLEKVMVQKKLMADE

Homology

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BLAST of PI0024429 vs. ExPASy TrEMBL
Match: A0A5D3CJ99 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold227G00470 PE=4 SV=1)

HSP 1 Score: 449.1 bits (1154), Expect = 1.8e-122
Identity = 259/471 (54.99%), Postives = 282/471 (59.87%), Query Frame = 0


Query: 1   MAGRKGGIPTVGDNREQEEVEEIATLSPRTSTVRLLAVEDSLGDLHKKFDRVMDTLETLT 60
           MAGR+ GIP  GDNREQEEVEE A LSPRTSTV  LAVEDSLGDLH+KFDRVMDTLETLT
Sbjct: 1   MAGRREGIPATGDNREQEEVEENAALSPRTSTVCFLAVEDSLGDLHEKFDRVMDTLETLT 60

Query: 61  RRMDGLPTPARIEANVNNDRNDGNRGGRRAQRNFRTLPNQRNDQRRRPMENPLRYADDDS 120
           RRMDGLP  ARIEAN NNDRNDGNRGGRRA+RNFR LPNQRNDQR+RPMENPLRYAD+DS
Sbjct: 61  RRMDGLPALARIEANANNDRNDGNRGGRRARRNFRNLPNQRNDQRKRPMENPLRYADNDS 120

Query: 121 MEEYEAWQNGQECDSSSGDEQENIWNDNGDIRMRRVYRGHEARREVHHDYKMKIDLPTYD 180
           MEEYEAWQNGQECDSSS DEQ NIWNDN D++MR+VYRGHEA+REVHHDYKMKIDLPTY 
Sbjct: 121 MEEYEAWQNGQECDSSSSDEQGNIWNDNRDMQMRQVYRGHEAQREVHHDYKMKIDLPTYK 180

Query: 181 GKRDIESFLDWIKNTENFFNYMDTPNRKKVHLVALKLRGGASAWWDQLEINKQRYGKPPV 240
           GK D+ESFLDWI+NTENFFNYMDT +RKKVHLVALKLRGGASAWWDQ+EIN+QRYGKPP+
Sbjct: 181 GKHDLESFLDWIENTENFFNYMDTFDRKKVHLVALKLRGGASAWWDQVEINRQRYGKPPI 240

Query: 241 HSWEKMKKLLKHVF----YLQTMNKRY----------------------IISIKTV---- 300
            SWEKMKKL+K  F    Y QT+  +Y                        ++KTV    
Sbjct: 241 CSWEKMKKLMKARFLPPNYEQTLYNQYQNCRQGSKSVAEYIKEFHKLSARTNLKTVEEMM 300

Query: 301 -------------------------------------------AKEADHKE--------- 314
                                                      A+EA  K+         
Sbjct: 301 AARLRNTNRKTTWETDFSKKQSYSNKTNEQPSTSVAEKSKDVEAQEATKKKENAGKGKVQ 360

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BLAST of PI0024429 vs. ExPASy TrEMBL
Match: A0A5A7UQ86 (RNA-directed DNA polymerase-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold280G001990 PE=4 SV=1)

HSP 1 Score: 361.3 bits (926), Expect = 4.9e-96
Identity = 181/223 (81.17%), Postives = 201/223 (90.13%), Query Frame = 0


Query: 1   MAGRKGGIPTVGDNREQEEVEEIATLSPRTSTVRLLAVEDSLGDLHKKFDRVMDTLETLT 60
           MA R+GGIP  GDNREQEEVE IATLSPRTSTVRLLAV+D LGDLH+KF+R+MD LETLT
Sbjct: 1   MADRRGGIPAAGDNREQEEVEAIATLSPRTSTVRLLAVKDFLGDLHEKFNRMMDNLETLT 60

Query: 61  RRMDGLPTPARIEANVNNDRNDGNRGGRRAQRNFRTLPNQRNDQRRRPMENPLRYADDDS 120
           +RMDGLP PARIEAN+N DRN+ NRGGRRAQRNF  +PNQRNDQ RRPME PLRYADDDS
Sbjct: 61  QRMDGLPAPARIEANMNIDRNERNRGGRRAQRNFSNMPNQRNDQIRRPMEMPLRYADDDS 120

Query: 121 MEEYEAWQNGQECDSSSGDEQENIWNDNGDIRMRRVYRGHEARREVHHDYKMKIDLPTYD 180
           +E+ +AWQN QE DSSSGDE+ NIW+DNGDI+MR+ YRGHEARREVHHDYKMK+DLPTY+
Sbjct: 121 LEKGDAWQNRQEYDSSSGDERGNIWDDNGDIQMRQAYRGHEARREVHHDYKMKLDLPTYN 180

Query: 181 GKRDIESFLDWIKNTENFFNYMDTPNRKKVHLVALKLRGGASA 224
           GK DIESFLD IKNTENFF YMDTP+RKKVHL+ALKLRGG SA
Sbjct: 181 GKCDIESFLDRIKNTENFFKYMDTPDRKKVHLMALKLRGGTSA 223

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BLAST of PI0024429 vs. ExPASy TrEMBL
Match: A0A5D3DKV9 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold205G00260 PE=4 SV=1)

HSP 1 Score: 278.1 bits (710), Expect = 5.5e-71
Identity = 143/209 (68.42%), Postives = 161/209 (77.03%), Query Frame = 0


Query: 1   MAGRKGGIPTVGDNREQEEVEEIATLSPRTSTVRLLAVEDSLGDLHKKFDRVMDTLETLT 60
           MAG++G IP   DNREQ+E EEI  LSPRTSTV LLAVEDSLGDLH KFD++MD+LETL 
Sbjct: 1   MAGQRGAIPAAWDNREQQEAEEITVLSPRTSTVHLLAVEDSLGDLHDKFDKMMDSLETLN 60

Query: 61  RRMDGLPTPARIEANVNNDRNDGNRGGRRAQRNFRTLPNQRNDQRRRPMENPLRYADDDS 120
           +RMDGL  PARIEANV NDRNDGN+GGR+A+RN R LPNQ+ND+ RRP E PL       
Sbjct: 61  QRMDGLLAPARIEANVVNDRNDGNKGGRQARRNHRNLPNQKNDRIRRPNEVPL------- 120

Query: 121 MEEYEAWQNGQECDSSSGDEQENIWNDNGDIRMRRVYRGHEARREVHHDYKMKIDLPTYD 180
                            GDEQ NIWNDNGD +MR+ YRG EARREVHHDYKMKIDLP ++
Sbjct: 121 -----------------GDEQGNIWNDNGDFQMRQAYRGQEARREVHHDYKMKIDLPVHN 180

Query: 181 GKRDIESFLDWIKNTENFFNYMDTPNRKK 210
           GKRDI SFLDWIK+TENFFNYMDTP+RKK
Sbjct: 181 GKRDITSFLDWIKSTENFFNYMDTPHRKK 185

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BLAST of PI0024429 vs. ExPASy TrEMBL
Match: A0A5D3CH16 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold332G001440 PE=4 SV=1)

HSP 1 Score: 271.6 bits (693), Expect = 5.1e-69
Identity = 127/146 (86.99%), Postives = 135/146 (92.47%), Query Frame = 0


Query: 109 MENPLRYADDDSMEEYEAWQNGQECDSSSGDEQENIWNDNGDIRMRRVYRGHEARREVHH 168
           ME PLRY DDDSMEEYEAWQNGQECDSSS DEQ NIWNDNGDIRMR+ Y+G EARREVHH
Sbjct: 1   MEIPLRYVDDDSMEEYEAWQNGQECDSSSSDEQGNIWNDNGDIRMRQTYKGREARREVHH 60

Query: 169 DYKMKIDLPTYDGKRDIESFLDWIKNTENFFNYMDTPNRKKVHLVALKLRGGASAWWDQL 228
           DYKMKIDLPTY+GKRDIESFLDWIKN ENFFNYMDTP+RKK+HLVALKL GGASAWWDQL
Sbjct: 61  DYKMKIDLPTYNGKRDIESFLDWIKNIENFFNYMDTPDRKKMHLVALKLCGGASAWWDQL 120

Query: 229 EINKQRYGKPPVHSWEKMKKLLKHVF 255
           EIN+QRYGKPP+ SWEKMK+LLK  F
Sbjct: 121 EINRQRYGKPPIRSWEKMKELLKAHF 146

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BLAST of PI0024429 vs. ExPASy TrEMBL
Match: A0A5A7U7S6 (E3 ubiquitin-protein ligase SHPRH isoform X4 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold60G004530 PE=4 SV=1)

HSP 1 Score: 244.2 bits (622), Expect = 8.7e-61
Identity = 160/389 (41.13%), Postives = 194/389 (49.87%), Query Frame = 0


Query: 1    MAGRKGGIPTVGDNREQEEVEEIATLSPRTSTVRLLAVEDSLGDLHKKFDRVMDTLETLT 60
            MAGR+G IP  GDN EQEE EEI  L PRTS VRLLA+E+SLGDLH KFDR++D LE   
Sbjct: 786  MAGRRGAIPAAGDNCEQEETEEITVLLPRTSMVRLLAIENSLGDLHDKFDRMLDNLEEAD 845

Query: 61   RRMDGLPTPARIEANVNNDRNDGNRGGRRAQRNFRTLPNQRNDQRRRPMENPLRYADDDS 120
             + +   T      +V  D                  P   +    + +   +   +   
Sbjct: 846  EQEEITGTYLTKGKSVEGD------------------PTMFHFVMLKKIRKKIMKLNSKK 905

Query: 121  MEEYEAWQNGQECDSSSGDEQENIWNDNGDIRMRRVYRGHEARREVHHDYKMKIDLPTYD 180
                 A   G    + +  E + +             + HE   EVHHDYKMKIDLPTY+
Sbjct: 906  TTLQVAMSKGISGITMTKCEWDKLIEG----------KKHE---EVHHDYKMKIDLPTYN 965

Query: 181  GKRDIESFLDWIKNTENFFNYMDTPNRKKVHLVALKLRGGASAWWDQLEINKQRYGKPPV 240
            GKRD +SFLDW+K+TENFFNYMDTP+RKKVHLV LKLR GASAWWDQLEIN+QRYGKPP+
Sbjct: 966  GKRDTKSFLDWVKSTENFFNYMDTPDRKKVHLVTLKLRVGASAWWDQLEINRQRYGKPPI 1025

Query: 241  HSWEKMKKLLKHVF----YLQTMNKRY------------------IISIKTVAKEADH-- 300
              WEKMKKLLK  F    Y QT+  +Y                   +S +T   E +H  
Sbjct: 1026 RLWEKMKKLLKARFLPPNYEQTLYNQYQNCRQGKRSVAEYIEEFHRLSTRTNLSENEHHQ 1085

Query: 301  ----------------------------------------------------KELVTALN 314
                                                                K+LVT LN
Sbjct: 1086 IARFIGGLRFDIKEKVKLQPFHFLSEAISLAETVDEMIAIDQEYEWKDYMGAKKLVTILN 1143

[Close]

BLAST of PI0024429 vs. NCBI nr
Match: TYK11204.1 (reverse transcriptase [Cucumis melo var. makuwa])

HSP 1 Score: 449.1 bits (1154), Expect = 3.7e-122
Identity = 259/471 (54.99%), Postives = 282/471 (59.87%), Query Frame = 0


Query: 1   MAGRKGGIPTVGDNREQEEVEEIATLSPRTSTVRLLAVEDSLGDLHKKFDRVMDTLETLT 60
           MAGR+ GIP  GDNREQEEVEE A LSPRTSTV  LAVEDSLGDLH+KFDRVMDTLETLT
Sbjct: 1   MAGRREGIPATGDNREQEEVEENAALSPRTSTVCFLAVEDSLGDLHEKFDRVMDTLETLT 60

Query: 61  RRMDGLPTPARIEANVNNDRNDGNRGGRRAQRNFRTLPNQRNDQRRRPMENPLRYADDDS 120
           RRMDGLP  ARIEAN NNDRNDGNRGGRRA+RNFR LPNQRNDQR+RPMENPLRYAD+DS
Sbjct: 61  RRMDGLPALARIEANANNDRNDGNRGGRRARRNFRNLPNQRNDQRKRPMENPLRYADNDS 120

Query: 121 MEEYEAWQNGQECDSSSGDEQENIWNDNGDIRMRRVYRGHEARREVHHDYKMKIDLPTYD 180
           MEEYEAWQNGQECDSSS DEQ NIWNDN D++MR+VYRGHEA+REVHHDYKMKIDLPTY 
Sbjct: 121 MEEYEAWQNGQECDSSSSDEQGNIWNDNRDMQMRQVYRGHEAQREVHHDYKMKIDLPTYK 180

Query: 181 GKRDIESFLDWIKNTENFFNYMDTPNRKKVHLVALKLRGGASAWWDQLEINKQRYGKPPV 240
           GK D+ESFLDWI+NTENFFNYMDT +RKKVHLVALKLRGGASAWWDQ+EIN+QRYGKPP+
Sbjct: 181 GKHDLESFLDWIENTENFFNYMDTFDRKKVHLVALKLRGGASAWWDQVEINRQRYGKPPI 240

Query: 241 HSWEKMKKLLKHVF----YLQTMNKRY----------------------IISIKTV---- 300
            SWEKMKKL+K  F    Y QT+  +Y                        ++KTV    
Sbjct: 241 CSWEKMKKLMKARFLPPNYEQTLYNQYQNCRQGSKSVAEYIKEFHKLSARTNLKTVEEMM 300

Query: 301 -------------------------------------------AKEADHKE--------- 314
                                                      A+EA  K+         
Sbjct: 301 AARLRNTNRKTTWETDFSKKQSYSNKTNEQPSTSVAEKSKDVEAQEATKKKENAGKGKVQ 360

[Close]

BLAST of PI0024429 vs. NCBI nr
Match: KAA0057344.1 (RNA-directed DNA polymerase-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 361.3 bits (926), Expect = 1.0e-95
Identity = 181/223 (81.17%), Postives = 201/223 (90.13%), Query Frame = 0


Query: 1   MAGRKGGIPTVGDNREQEEVEEIATLSPRTSTVRLLAVEDSLGDLHKKFDRVMDTLETLT 60
           MA R+GGIP  GDNREQEEVE IATLSPRTSTVRLLAV+D LGDLH+KF+R+MD LETLT
Sbjct: 1   MADRRGGIPAAGDNREQEEVEAIATLSPRTSTVRLLAVKDFLGDLHEKFNRMMDNLETLT 60

Query: 61  RRMDGLPTPARIEANVNNDRNDGNRGGRRAQRNFRTLPNQRNDQRRRPMENPLRYADDDS 120
           +RMDGLP PARIEAN+N DRN+ NRGGRRAQRNF  +PNQRNDQ RRPME PLRYADDDS
Sbjct: 61  QRMDGLPAPARIEANMNIDRNERNRGGRRAQRNFSNMPNQRNDQIRRPMEMPLRYADDDS 120

Query: 121 MEEYEAWQNGQECDSSSGDEQENIWNDNGDIRMRRVYRGHEARREVHHDYKMKIDLPTYD 180
           +E+ +AWQN QE DSSSGDE+ NIW+DNGDI+MR+ YRGHEARREVHHDYKMK+DLPTY+
Sbjct: 121 LEKGDAWQNRQEYDSSSGDERGNIWDDNGDIQMRQAYRGHEARREVHHDYKMKLDLPTYN 180

Query: 181 GKRDIESFLDWIKNTENFFNYMDTPNRKKVHLVALKLRGGASA 224
           GK DIESFLD IKNTENFF YMDTP+RKKVHL+ALKLRGG SA
Sbjct: 181 GKCDIESFLDRIKNTENFFKYMDTPDRKKVHLMALKLRGGTSA 223

[Close]

BLAST of PI0024429 vs. NCBI nr
Match: XP_031741035.1 (uncharacterized protein LOC116403692 [Cucumis sativus])

HSP 1 Score: 303.9 bits (777), Expect = 1.9e-78
Identity = 171/296 (57.77%), Postives = 201/296 (67.91%), Query Frame = 0


Query: 1   MAGRKGGIPTVGDNREQEEVEEIATLSPRTSTVRLLAVEDSLGDLHKKFDRVMDTLETLT 60
           MAGR+   P  G+NR QE  EEI  LSP+TSTVRLLAVE+SLGDLH KFDR+M+++E L 
Sbjct: 1   MAGRRVNNPATGENRVQEAAEEITVLSPKTSTVRLLAVEESLGDLHNKFDRLMESVELLN 60

Query: 61  RRMDGLPTPARIEANVNNDRNDGNRGGRRAQRNFRTLPNQRNDQRRRPMENPLRYADDDS 120
           RR +    P R E N  ND+  G   GRRA+   R + N R  QRRRP     +  D+D 
Sbjct: 61  RREEFPQPPPRNEINFQNDQRFGETRGRRARGYVRNMNNPRGLQRRRPGYAIQQQLDEDF 120

Query: 121 MEEYEAWQNGQECDSSSGDEQENIWNDNGDIRMRRVYRGHEARREVHHDYKMKIDLPTYD 180
            E+ EAWQ  QE DSSSGDEQ N+WN N + R  R  +  EARR  +HDYKMKIDLP YD
Sbjct: 121 QEDQEAWQETQEDDSSSGDEQGNMWNFNDEARAGRNNQRIEARRGEYHDYKMKIDLPMYD 180

Query: 181 GKRDIESFLDWIKNTENFFNYMDTPNRKKVHLVALKLRGGASAWWDQLEINKQRYGKPPV 240
           GKR+IE+FLDWIK+TENFFNYMDTP RKKVHLVALKLR GASAWWDQLEIN+QR GK PV
Sbjct: 181 GKRNIEAFLDWIKSTENFFNYMDTPERKKVHLVALKLRAGASAWWDQLEINRQRCGKQPV 240

Query: 241 HSWEKMKKLLKHVF----YLQTMNKRYIISIKTVAKEADHKELVTALNLKAETHPN 293
            SWEKMKKLLK  F    Y QT+  +Y    + V   A++ E    L+ +     N
Sbjct: 241 RSWEKMKKLLKARFLPPNYEQTLYNQYQNCRQGVRSVAEYIEEFHRLSARTNLSEN 296

[Close]

BLAST of PI0024429 vs. NCBI nr
Match: XP_031743026.1 (uncharacterized protein LOC116404533 [Cucumis sativus])

HSP 1 Score: 297.0 bits (759), Expect = 2.3e-76
Identity = 169/296 (57.09%), Postives = 199/296 (67.23%), Query Frame = 0


Query: 1   MAGRKGGIPTVGDNREQEEVEEIATLSPRTSTVRLLAVEDSLGDLHKKFDRVMDTLETLT 60
           MAGR+   P  G+NR QE VEEI  LSP+TSTVRLLAVE+SLGDLH KFD++M+++E L 
Sbjct: 1   MAGRRVNNPATGENRVQEAVEEITVLSPKTSTVRLLAVEESLGDLHNKFDKLMESVELLN 60

Query: 61  RRMDGLPTPARIEANVNNDRNDGNRGGRRAQRNFRTLPNQRNDQRRRPMENPLRYADDDS 120
           RR +    P R E N  ND+  G   GRRA+   R + N R  QRRRP     +  D+D 
Sbjct: 61  RRGEFPQPPPRNEINFQNDQRFGEARGRRARGYVRNMNNPRGLQRRRPGYAIQQQLDEDL 120

Query: 121 MEEYEAWQNGQECDSSSGDEQENIWNDNGDIRMRRVYRGHEARREVHHDYKMKIDLPTYD 180
            E+ E WQ  QE DSSSGDEQ N+WN N + R  R  R  EARR  +HDYKMKIDLP Y 
Sbjct: 121 QEDQEDWQETQEDDSSSGDEQGNMWNFNDEARAGRNNRRIEARRGEYHDYKMKIDLPMYY 180

Query: 181 GKRDIESFLDWIKNTENFFNYMDTPNRKKVHLVALKLRGGASAWWDQLEINKQRYGKPPV 240
           GKR+IE+FLDWIK+TENFF YMDTP RKKVHLVALKLR GASAWWDQLEIN+QR GK PV
Sbjct: 181 GKRNIEAFLDWIKSTENFFTYMDTPERKKVHLVALKLRAGASAWWDQLEINRQRCGKQPV 240

Query: 241 HSWEKMKKLLKHVF----YLQTMNKRYIISIKTVAKEADHKELVTALNLKAETHPN 293
            SWEKMKKLLK  F    Y QT+  +Y    + V   A++ E    L+ +     N
Sbjct: 241 RSWEKMKKLLKARFLPPNYEQTLYNQYQNCRQGVRTVAEYIEEFHRLSARTNLSEN 296

[Close]

BLAST of PI0024429 vs. NCBI nr
Match: KAA0056581.1 (reverse transcriptase [Cucumis melo var. makuwa] >TYK24263.1 reverse transcriptase [Cucumis melo var. makuwa])

HSP 1 Score: 278.1 bits (710), Expect = 1.1e-70
Identity = 143/209 (68.42%), Postives = 161/209 (77.03%), Query Frame = 0


Query: 1   MAGRKGGIPTVGDNREQEEVEEIATLSPRTSTVRLLAVEDSLGDLHKKFDRVMDTLETLT 60
           MAG++G IP   DNREQ+E EEI  LSPRTSTV LLAVEDSLGDLH KFD++MD+LETL 
Sbjct: 1   MAGQRGAIPAAWDNREQQEAEEITVLSPRTSTVHLLAVEDSLGDLHDKFDKMMDSLETLN 60

Query: 61  RRMDGLPTPARIEANVNNDRNDGNRGGRRAQRNFRTLPNQRNDQRRRPMENPLRYADDDS 120
           +RMDGL  PARIEANV NDRNDGN+GGR+A+RN R LPNQ+ND+ RRP E PL       
Sbjct: 61  QRMDGLLAPARIEANVVNDRNDGNKGGRQARRNHRNLPNQKNDRIRRPNEVPL------- 120

Query: 121 MEEYEAWQNGQECDSSSGDEQENIWNDNGDIRMRRVYRGHEARREVHHDYKMKIDLPTYD 180
                            GDEQ NIWNDNGD +MR+ YRG EARREVHHDYKMKIDLP ++
Sbjct: 121 -----------------GDEQGNIWNDNGDFQMRQAYRGQEARREVHHDYKMKIDLPVHN 180

Query: 181 GKRDIESFLDWIKNTENFFNYMDTPNRKK 210
           GKRDI SFLDWIK+TENFFNYMDTP+RKK
Sbjct: 181 GKRDITSFLDWIKSTENFFNYMDTPHRKK 185

The following BLAST results are available for this feature:

BLAST of PI0024429 vs.


Match Name	E-value	Identity	Description

BLAST of PI0024429 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3CJ99	1.8e-122	54.99	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold22...	[more]
A0A5A7UQ86	4.9e-96	81.17	RNA-directed DNA polymerase-like protein OS=Cucumis melo var. makuwa OX=1194695 ...	[more]
A0A5D3DKV9	5.5e-71	68.42	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold20...	[more]
A0A5D3CH16	5.1e-69	86.99	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold33...	[more]
A0A5A7U7S6	8.7e-61	41.13	E3 ubiquitin-protein ligase SHPRH isoform X4 OS=Cucumis melo var. makuwa OX=1194...	[more]

BLAST of PI0024429 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK11204.1	3.7e-122	54.99	reverse transcriptase [Cucumis melo var. makuwa]	[more]
KAA0057344.1	1.0e-95	81.17	RNA-directed DNA polymerase-like protein [Cucumis melo var. makuwa]	[more]
XP_031741035.1	1.9e-78	57.77	uncharacterized protein LOC116403692 [Cucumis sativus]	[more]
XP_031743026.1	2.3e-76	57.09	uncharacterized protein LOC116404533 [Cucumis sativus]	[more]
KAA0056581.1	1.1e-70	68.42	reverse transcriptase [Cucumis melo var. makuwa] >TYK24263.1 reverse transcripta...	[more]

BLAST of PI0024429 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036397	Ribonuclease H superfamily	GENE3D	3.30.420.10		coord: 313..372 e-value: 1.0E-6 score: 30.2
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..22
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 70..111
None	No IPR available	PANTHER	PTHR35046:SF6	ZINC KNUCKLE (CCHC-TYPE) FAMILY PROTEIN	coord: 129..255
None	No IPR available	PANTHER	PTHR35046	ZINC KNUCKLE (CCHC-TYPE) FAMILY PROTEIN	coord: 129..255
IPR000048	IQ motif, EF-hand binding site	PROSITE	PS50096	IQ	coord: 146..175 score: 6.6868

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
PI0024429.1	PI0024429.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
biological_process	GO:0032259	methylation
biological_process	GO:0006278	RNA-dependent DNA biosynthetic process
molecular_function	GO:0008168	methyltransferase activity
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0005515	protein binding
molecular_function	GO:0003964	RNA-directed DNA polymerase activity
molecular_function	GO:0008270	zinc ion binding