PI0024296 (gene) Melon (PI 482460) v1

Overview


Name	PI0024296
Type	gene
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	THO complex subunit 4D
Location	chr06: 14851062 .. 14851806 (-)
RNA-Seq Expression	PI0024296
Synteny	PI0024296

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACACAAAGCCCTCTAACAACCCTTGTGCACGAAAATAAGCTAAAACAAGCTTATCGCGGCAAAAGAGAAGAAATACAAATCGAGGGTAAAATGGTAATTCTCCCGAAAGCATTCAAAAACCTTCTCGCGGCAAAACTACTTCAAAACGCGTAGCTCATCGCAGATGCCTACTGCGGAGGCAAGTGCTTCACAACTAGAGCTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGAGTTGTGGTTTCACTTTCGTATGTGGTGGCATAGTCTCATTCTTTATTGCCAATGGTTCATTGACCATGTATTCTCTAATTCTCGCGTCTTCATTGTCTTTACTTATCATTGTTATTCATATTTGGCTTCTTAAGTTAGCATGAGATTTGTAAGAAAATATGATAGTTATCGTTTTCTATTTTAGATGTGTATATAAATGTTAGGTCCCTTGTCAGCTTTAGTTGGCTAATAAACTTCCTATTATTTATTGAAGGGCTCAGCAGAGGTGGTATATACTCGGCGAAGTGATGCATTTGCTGCTCTGAAGCGCTATAACAATGTGTTATTGGACGGGAAGCCAATGAAGATTGAAATGCTTGGTGATAATGCTGAAATGCCGGTTTCTGCACGTATAATGTTACTGGAACGAATGGAAGAAACAGGAGGACAGTTGTTCTAA

mRNA sequence

ATGACACAAAGCCCTCTAACAACCCTTGTGCACGAAAATAAGCTAAAACAAGCTTATCGCGGCAAAAGAGAAGAAATACAAATCGAGGGTAAAATGGGCTCAGCAGAGGTGGTATATACTCGGCGAAGTGATGCATTTGCTGCTCTGAAGCGCTATAACAATGTGTTATTGGACGGGAAGCCAATGAAGATTGAAATGCTTGGTGATAATGCTGAAATGCCGGTTTCTGCACGTATAATGTTACTGGAACGAATGGAAGAAACAGGAGGACAGTTGTTCTAA

Coding sequence (CDS)

ATGACACAAAGCCCTCTAACAACCCTTGTGCACGAAAATAAGCTAAAACAAGCTTATCGCGGCAAAAGAGAAGAAATACAAATCGAGGGTAAAATGGGCTCAGCAGAGGTGGTATATACTCGGCGAAGTGATGCATTTGCTGCTCTGAAGCGCTATAACAATGTGTTATTGGACGGGAAGCCAATGAAGATTGAAATGCTTGGTGATAATGCTGAAATGCCGGTTTCTGCACGTATAATGTTACTGGAACGAATGGAAGAAACAGGAGGACAGTTGTTCTAA

Protein sequence

MTQSPLTTLVHENKLKQAYRGKREEIQIEGKMGSAEVVYTRRSDAFAALKRYNNVLLDGKPMKIEMLGDNAEMPVSARIMLLERMEETGGQLF

Homology

[Close]

BLAST of PI0024296 vs. ExPASy Swiss-Prot
Match: Q6NQ72 (THO complex subunit 4D OS=Arabidopsis thaliana OX=3702 GN=ALY4 PE=1 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 2.0e-11
Identity = 33/49 (67.35%), Postives = 42/49 (85.71%), Query Frame = 0


Query: 33  GSAEVVYTRRSDAFAALKRYNNVLLDGKPMKIEMLGDN--AEMPVSARI 80
           G+AEVVY RRSDAF ALK+YNNVLLDG+PM++E+LG N  +E P+S R+
Sbjct: 134 GTAEVVYPRRSDAFQALKKYNNVLLDGRPMRLEILGGNNSSEAPLSGRV 182

[Close]

BLAST of PI0024296 vs. ExPASy Swiss-Prot
Match: Q94EH8 (THO complex subunit 4C OS=Arabidopsis thaliana OX=3702 GN=ALY3 PE=1 SV=1)

HSP 1 Score: 69.3 bits (168), Expect = 2.6e-11
Identity = 33/48 (68.75%), Postives = 41/48 (85.42%), Query Frame = 0


Query: 33  GSAEVVYTRRSDAFAALKRYNNVLLDGKPMKIEMLGDNAE-MPVSARI 80
           GSAEVVY RRSDA  A+++YNNVLLDG+PMK+E+LG N E  PV+AR+
Sbjct: 148 GSAEVVYMRRSDAIQAMRKYNNVLLDGRPMKLEILGGNTESAPVAARV 195

[Close]

BLAST of PI0024296 vs. ExPASy Swiss-Prot
Match: Q8L773 (THO complex subunit 4A OS=Arabidopsis thaliana OX=3702 GN=ALY1 PE=1 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 1.2e-08
Identity = 27/40 (67.50%), Postives = 35/40 (87.50%), Query Frame = 0


Query: 33  GSAEVVYTRRSDAFAALKRYNNVLLDGKPMKIEMLGDNAE 73
           G+AEVVY+RR DA AA+K+YN+V LDGKPMKIE++G N +
Sbjct: 129 GTAEVVYSRRGDALAAVKKYNDVQLDGKPMKIEIVGTNLQ 168

[Close]

BLAST of PI0024296 vs. ExPASy Swiss-Prot
Match: Q8L719 (THO complex subunit 4B OS=Arabidopsis thaliana OX=3702 GN=ALY2 PE=1 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 2.0e-08
Identity = 28/42 (66.67%), Postives = 34/42 (80.95%), Query Frame = 0


Query: 33  GSAEVVYTRRSDAFAALKRYNNVLLDGKPMKIEMLGDNAEMP 75
           G+AEVV++RR DA AA+KRYNNV LDGK MKIE++G N   P
Sbjct: 149 GTAEVVFSRRGDALAAVKRYNNVQLDGKLMKIEIVGTNLSAP 190

[Close]

BLAST of PI0024296 vs. ExPASy Swiss-Prot
Match: Q58EA2 (THO complex subunit 4-A OS=Xenopus laevis OX=8355 GN=alyref-a PE=2 SV=1)

HSP 1 Score: 44.3 bits (103), Expect = 8.9e-04
Identity = 18/41 (43.90%), Postives = 30/41 (73.17%), Query Frame = 0


Query: 32  MGSAEVVYTRRSDAFAALKRYNNVLLDGKPMKIEMLGDNAE 73
           +G+A+V + R++DA  A+K+YN V LDG+PM I+++    E
Sbjct: 146 LGTADVHFERKADALKAMKQYNGVPLDGRPMNIQLVTSQIE 186

[Close]

BLAST of PI0024296 vs. ExPASy TrEMBL
Match: A0A5D3BPA9 (THO complex subunit 4D OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold451G002100 PE=4 SV=1)

HSP 1 Score: 95.1 bits (235), Expect = 1.6e-16
Identity = 47/47 (100.00%), Postives = 47/47 (100.00%), Query Frame = 0


Query: 33  GSAEVVYTRRSDAFAALKRYNNVLLDGKPMKIEMLGDNAEMPVSARI 80
           GSAEVVYTRRSDAFAALKRYNNVLLDGKPMKIEMLGDNAEMPVSARI
Sbjct: 166 GSAEVVYTRRSDAFAALKRYNNVLLDGKPMKIEMLGDNAEMPVSARI 212

[Close]

BLAST of PI0024296 vs. ExPASy TrEMBL
Match: A0A0A0L717 (RRM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G302100 PE=4 SV=1)

HSP 1 Score: 95.1 bits (235), Expect = 1.6e-16
Identity = 47/47 (100.00%), Postives = 47/47 (100.00%), Query Frame = 0


Query: 33  GSAEVVYTRRSDAFAALKRYNNVLLDGKPMKIEMLGDNAEMPVSARI 80
           GSAEVVYTRRSDAFAALKRYNNVLLDGKPMKIEMLGDNAEMPVSARI
Sbjct: 138 GSAEVVYTRRSDAFAALKRYNNVLLDGKPMKIEMLGDNAEMPVSARI 184

[Close]

BLAST of PI0024296 vs. ExPASy TrEMBL
Match: A0A1S3C452 (THO complex subunit 4D OS=Cucumis melo OX=3656 GN=LOC103496802 PE=4 SV=1)

HSP 1 Score: 95.1 bits (235), Expect = 1.6e-16
Identity = 47/47 (100.00%), Postives = 47/47 (100.00%), Query Frame = 0


Query: 33  GSAEVVYTRRSDAFAALKRYNNVLLDGKPMKIEMLGDNAEMPVSARI 80
           GSAEVVYTRRSDAFAALKRYNNVLLDGKPMKIEMLGDNAEMPVSARI
Sbjct: 138 GSAEVVYTRRSDAFAALKRYNNVLLDGKPMKIEMLGDNAEMPVSARI 184

[Close]

BLAST of PI0024296 vs. ExPASy TrEMBL
Match: A0A6J1CP51 (THO complex subunit 4D-like OS=Momordica charantia OX=3673 GN=LOC111013262 PE=4 SV=1)

HSP 1 Score: 93.6 bits (231), Expect = 4.7e-16
Identity = 46/47 (97.87%), Postives = 47/47 (100.00%), Query Frame = 0


Query: 33  GSAEVVYTRRSDAFAALKRYNNVLLDGKPMKIEMLGDNAEMPVSARI 80
           GSAEVVYTRRSDAFAALKRYNNVLLDGKPMKIE+LGDNAEMPVSARI
Sbjct: 137 GSAEVVYTRRSDAFAALKRYNNVLLDGKPMKIEILGDNAEMPVSARI 183

[Close]

BLAST of PI0024296 vs. ExPASy TrEMBL
Match: A0A6J1J564 (THO complex subunit 4D-like OS=Cucurbita maxima OX=3661 GN=LOC111481464 PE=4 SV=1)

HSP 1 Score: 91.7 bits (226), Expect = 1.8e-15
Identity = 45/47 (95.74%), Postives = 46/47 (97.87%), Query Frame = 0


Query: 33  GSAEVVYTRRSDAFAALKRYNNVLLDGKPMKIEMLGDNAEMPVSARI 80
           GSAEVVYTRRSDAFAALKRYNNVLLDGKPMKIEMLGDNA+ PVSARI
Sbjct: 138 GSAEVVYTRRSDAFAALKRYNNVLLDGKPMKIEMLGDNADTPVSARI 184

[Close]

BLAST of PI0024296 vs. NCBI nr
Match: TYK01611.1 (THO complex subunit 4D [Cucumis melo var. makuwa])

HSP 1 Score: 95.1 bits (235), Expect = 3.3e-16
Identity = 47/47 (100.00%), Postives = 47/47 (100.00%), Query Frame = 0


Query: 33  GSAEVVYTRRSDAFAALKRYNNVLLDGKPMKIEMLGDNAEMPVSARI 80
           GSAEVVYTRRSDAFAALKRYNNVLLDGKPMKIEMLGDNAEMPVSARI
Sbjct: 166 GSAEVVYTRRSDAFAALKRYNNVLLDGKPMKIEMLGDNAEMPVSARI 212

[Close]

BLAST of PI0024296 vs. NCBI nr
Match: XP_008457020.1 (PREDICTED: THO complex subunit 4D [Cucumis melo])

HSP 1 Score: 95.1 bits (235), Expect = 3.3e-16
Identity = 47/47 (100.00%), Postives = 47/47 (100.00%), Query Frame = 0


Query: 33  GSAEVVYTRRSDAFAALKRYNNVLLDGKPMKIEMLGDNAEMPVSARI 80
           GSAEVVYTRRSDAFAALKRYNNVLLDGKPMKIEMLGDNAEMPVSARI
Sbjct: 138 GSAEVVYTRRSDAFAALKRYNNVLLDGKPMKIEMLGDNAEMPVSARI 184

[Close]

BLAST of PI0024296 vs. NCBI nr
Match: XP_004145851.1 (THO complex subunit 4D [Cucumis sativus] >KAE8650594.1 hypothetical protein Csa_011773 [Cucumis sativus])

HSP 1 Score: 95.1 bits (235), Expect = 3.3e-16
Identity = 47/47 (100.00%), Postives = 47/47 (100.00%), Query Frame = 0


Query: 33  GSAEVVYTRRSDAFAALKRYNNVLLDGKPMKIEMLGDNAEMPVSARI 80
           GSAEVVYTRRSDAFAALKRYNNVLLDGKPMKIEMLGDNAEMPVSARI
Sbjct: 138 GSAEVVYTRRSDAFAALKRYNNVLLDGKPMKIEMLGDNAEMPVSARI 184

[Close]

BLAST of PI0024296 vs. NCBI nr
Match: XP_038896761.1 (THO complex subunit 4D-like [Benincasa hispida])

HSP 1 Score: 94.0 bits (232), Expect = 7.4e-16
Identity = 46/47 (97.87%), Postives = 47/47 (100.00%), Query Frame = 0


Query: 33  GSAEVVYTRRSDAFAALKRYNNVLLDGKPMKIEMLGDNAEMPVSARI 80
           GSAEVVYTRRSDAFAALKRYNNVLLDG+PMKIEMLGDNAEMPVSARI
Sbjct: 138 GSAEVVYTRRSDAFAALKRYNNVLLDGRPMKIEMLGDNAEMPVSARI 184

[Close]

BLAST of PI0024296 vs. NCBI nr
Match: XP_022143379.1 (THO complex subunit 4D-like [Momordica charantia])

HSP 1 Score: 93.6 bits (231), Expect = 9.7e-16
Identity = 46/47 (97.87%), Postives = 47/47 (100.00%), Query Frame = 0


Query: 33  GSAEVVYTRRSDAFAALKRYNNVLLDGKPMKIEMLGDNAEMPVSARI 80
           GSAEVVYTRRSDAFAALKRYNNVLLDGKPMKIE+LGDNAEMPVSARI
Sbjct: 137 GSAEVVYTRRSDAFAALKRYNNVLLDGKPMKIEILGDNAEMPVSARI 183

[Close]

BLAST of PI0024296 vs. TAIR 10
Match: AT5G37720.1 (ALWAYS EARLY 4 )

HSP 1 Score: 69.7 bits (169), Expect = 1.4e-12
Identity = 33/49 (67.35%), Postives = 42/49 (85.71%), Query Frame = 0


Query: 33  GSAEVVYTRRSDAFAALKRYNNVLLDGKPMKIEMLGDN--AEMPVSARI 80
           G+AEVVY RRSDAF ALK+YNNVLLDG+PM++E+LG N  +E P+S R+
Sbjct: 134 GTAEVVYPRRSDAFQALKKYNNVLLDGRPMRLEILGGNNSSEAPLSGRV 182

[Close]

BLAST of PI0024296 vs. TAIR 10
Match: AT5G37720.2 (ALWAYS EARLY 4 )

HSP 1 Score: 69.7 bits (169), Expect = 1.4e-12
Identity = 33/49 (67.35%), Postives = 42/49 (85.71%), Query Frame = 0


Query: 33  GSAEVVYTRRSDAFAALKRYNNVLLDGKPMKIEMLGDN--AEMPVSARI 80
           G+AEVVY RRSDAF ALK+YNNVLLDG+PM++E+LG N  +E P+S R+
Sbjct: 134 GTAEVVYPRRSDAFQALKKYNNVLLDGRPMRLEILGGNNSSEAPLSGRV 182

[Close]

BLAST of PI0024296 vs. TAIR 10
Match: AT1G66260.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 69.3 bits (168), Expect = 1.8e-12
Identity = 33/48 (68.75%), Postives = 41/48 (85.42%), Query Frame = 0


Query: 33  GSAEVVYTRRSDAFAALKRYNNVLLDGKPMKIEMLGDNAE-MPVSARI 80
           GSAEVVY RRSDA  A+++YNNVLLDG+PMK+E+LG N E  PV+AR+
Sbjct: 148 GSAEVVYMRRSDAIQAMRKYNNVLLDGRPMKLEILGGNTESAPVAARV 195

[Close]

BLAST of PI0024296 vs. TAIR 10
Match: AT1G66260.2 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 69.3 bits (168), Expect = 1.8e-12
Identity = 33/48 (68.75%), Postives = 41/48 (85.42%), Query Frame = 0


Query: 33  GSAEVVYTRRSDAFAALKRYNNVLLDGKPMKIEMLGDNAE-MPVSARI 80
           GSAEVVY RRSDA  A+++YNNVLLDG+PMK+E+LG N E  PV+AR+
Sbjct: 148 GSAEVVYMRRSDAIQAMRKYNNVLLDGRPMKLEILGGNTESAPVAARV 195

[Close]

BLAST of PI0024296 vs. TAIR 10
Match: AT5G59950.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 60.5 bits (145), Expect = 8.5e-10
Identity = 27/40 (67.50%), Postives = 35/40 (87.50%), Query Frame = 0


Query: 33  GSAEVVYTRRSDAFAALKRYNNVLLDGKPMKIEMLGDNAE 73
           G+AEVVY+RR DA AA+K+YN+V LDGKPMKIE++G N +
Sbjct: 129 GTAEVVYSRRGDALAAVKKYNDVQLDGKPMKIEIVGTNLQ 168

The following BLAST results are available for this feature:

BLAST of PI0024296 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q6NQ72	2.0e-11	67.35	THO complex subunit 4D OS=Arabidopsis thaliana OX=3702 GN=ALY4 PE=1 SV=1	[more]
Q94EH8	2.6e-11	68.75	THO complex subunit 4C OS=Arabidopsis thaliana OX=3702 GN=ALY3 PE=1 SV=1	[more]
Q8L773	1.2e-08	67.50	THO complex subunit 4A OS=Arabidopsis thaliana OX=3702 GN=ALY1 PE=1 SV=1	[more]
Q8L719	2.0e-08	66.67	THO complex subunit 4B OS=Arabidopsis thaliana OX=3702 GN=ALY2 PE=1 SV=1	[more]
Q58EA2	8.9e-04	43.90	THO complex subunit 4-A OS=Xenopus laevis OX=8355 GN=alyref-a PE=2 SV=1	[more]

BLAST of PI0024296 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3BPA9	1.6e-16	100.00	THO complex subunit 4D OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold4...	[more]
A0A0A0L717	1.6e-16	100.00	RRM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G302100 PE=4 SV...	[more]
A0A1S3C452	1.6e-16	100.00	THO complex subunit 4D OS=Cucumis melo OX=3656 GN=LOC103496802 PE=4 SV=1	[more]
A0A6J1CP51	4.7e-16	97.87	THO complex subunit 4D-like OS=Momordica charantia OX=3673 GN=LOC111013262 PE=4 ...	[more]
A0A6J1J564	1.8e-15	95.74	THO complex subunit 4D-like OS=Cucurbita maxima OX=3661 GN=LOC111481464 PE=4 SV=...	[more]

BLAST of PI0024296 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK01611.1	3.3e-16	100.00	THO complex subunit 4D [Cucumis melo var. makuwa]	[more]
XP_008457020.1	3.3e-16	100.00	PREDICTED: THO complex subunit 4D [Cucumis melo]	[more]
XP_004145851.1	3.3e-16	100.00	THO complex subunit 4D [Cucumis sativus] >KAE8650594.1 hypothetical protein Csa_...	[more]
XP_038896761.1	7.4e-16	97.87	THO complex subunit 4D-like [Benincasa hispida]	[more]
XP_022143379.1	9.7e-16	97.87	THO complex subunit 4D-like [Momordica charantia]	[more]

BLAST of PI0024296 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G37720.1	1.4e-12	67.35	ALWAYS EARLY 4	[more]
AT5G37720.2	1.4e-12	67.35	ALWAYS EARLY 4	[more]
AT1G66260.1	1.8e-12	68.75	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT1G66260.2	1.8e-12	68.75	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT5G59950.1	8.5e-10	67.50	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 7..68 e-value: 2.9E-5 score: 26.3
None	No IPR available	PANTHER	PTHR19965	RNA AND EXPORT FACTOR BINDING PROTEIN	coord: 31..82
None	No IPR available	PANTHER	PTHR19965:SF33	THO COMPLEX SUBUNIT 4C	coord: 31..82
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 13..69

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
PI0024296.1	PI0024296.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006334	nucleosome assembly
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0000786	nucleosome
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0008168	methyltransferase activity
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003676	nucleic acid binding