PI0024236 (gene) Melon (PI 482460) v1

Overview


Name	PI0024236
Type	gene
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	NAD(P)H-quinone oxidoreductase subunit 6, chloroplastic
Location	tig00003741: 95608 .. 96138 (+)
RNA-Seq Expression	PI0024236
Synteny	PI0024236

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATTTGCCTGGACCGATACATGATTTTCTTGTAGTCTTGTTGGGATCAGGTCTTATATTAGGAAGTATGGGAGTACTATTATTTAACAACTCCATTTATTCTGCTTTTTCGTTGGGACTGGTTCTTGTTTCTATATCCTTATTCTATATTCTAGCAAACGCCCAGTTTGTAGCTGCTGCGCAACTCCTTATTTACGTGGGAGCTATAAATGTTTTAATCATATTTGCTGTGATGTTCATGAAGGGTTCAGAATATTCCAAAGATTTTAATCTTTGGACCGTTGGGAATGGAGTTACTTTTCTGGTTTGTACAAGTATTTTTGTTTCACTAATGACTACTATTGTAGATACGTCATGGTATGGGATTATTTGGACTACAAGATCAAATCAGATTCTAGAGCAAGATTTAATAAATAATAGTCAACAAATTGGAATTTATTTATCAACATATTTTTTTCTTCCATTTGAACTCATTTCGATCATTCTTTTAGCTGCTTTGATCGGCGCAATTGCCGTGGCTCGCCAGTAA

mRNA sequence

ATGGATTTGCCTGGACCGATACATGATTTTCTTGTAGTCTTGTTGGGATCAGGTCTTATATTAGGAAGTATGGGAGTACTATTATTTAACAACTCCATTTATTCTGCTTTTTCGTTGGGACTGGTTCTTGTTTCTATATCCTTATTCTATATTCTAGCAAACGCCCAGTTTGTAGCTGCTGCGCAACTCCTTATTTACGTGGGAGCTATAAATGTTTTAATCATATTTGCTGTGATGTTCATGAAGGGTTCAGAATATTCCAAAGATTTTAATCTTTGGACCGTTGGGAATGGAGTTACTTTTCTGGTTTGTACAAGTATTTTTGTTTCACTAATGACTACTATTGTAGATACGTCATGGTATGGGATTATTTGGACTACAAGATCAAATCAGATTCTAGAGCAAGATTTAATAAATAATAGTCAACAAATTGGAATTTATTTATCAACATATTTTTTTCTTCCATTTGAACTCATTTCGATCATTCTTTTAGCTGCTTTGATCGGCGCAATTGCCGTGGCTCGCCAGTAA

Coding sequence (CDS)

ATGGATTTGCCTGGACCGATACATGATTTTCTTGTAGTCTTGTTGGGATCAGGTCTTATATTAGGAAGTATGGGAGTACTATTATTTAACAACTCCATTTATTCTGCTTTTTCGTTGGGACTGGTTCTTGTTTCTATATCCTTATTCTATATTCTAGCAAACGCCCAGTTTGTAGCTGCTGCGCAACTCCTTATTTACGTGGGAGCTATAAATGTTTTAATCATATTTGCTGTGATGTTCATGAAGGGTTCAGAATATTCCAAAGATTTTAATCTTTGGACCGTTGGGAATGGAGTTACTTTTCTGGTTTGTACAAGTATTTTTGTTTCACTAATGACTACTATTGTAGATACGTCATGGTATGGGATTATTTGGACTACAAGATCAAATCAGATTCTAGAGCAAGATTTAATAAATAATAGTCAACAAATTGGAATTTATTTATCAACATATTTTTTTCTTCCATTTGAACTCATTTCGATCATTCTTTTAGCTGCTTTGATCGGCGCAATTGCCGTGGCTCGCCAGTAA

Protein sequence

MDLPGPIHDFLVVLLGSGLILGSMGVLLFNNSIYSAFSLGLVLVSISLFYILANAQFVAAAQLLIYVGAINVLIIFAVMFMKGSEYSKDFNLWTVGNGVTFLVCTSIFVSLMTTIVDTSWYGIIWTTRSNQILEQDLINNSQQIGIYLSTYFFLPFELISIILLAALIGAIAVARQ

Homology

[Close]

BLAST of PI0024236 vs. ExPASy Swiss-Prot
Match: Q2QD38 (NAD(P)H-quinone oxidoreductase subunit 6, chloroplastic OS=Cucumis sativus OX=3659 GN=ndhG PE=3 SV=1)

HSP 1 Score: 321.6 bits (823), Expect = 5.4e-87
Identity = 175/176 (99.43%), Postives = 176/176 (100.00%), Query Frame = 0


Query: 1   MDLPGPIHDFLVVLLGSGLILGSMGVLLFNNSIYSAFSLGLVLVSISLFYILANAQFVAA 60
           MDLPGPIHDFLVVLLGSGLILGSMGVLLFNNSIYSAFSLGLVLVSISLFYILANAQFVAA
Sbjct: 1   MDLPGPIHDFLVVLLGSGLILGSMGVLLFNNSIYSAFSLGLVLVSISLFYILANAQFVAA 60

Query: 61  AQLLIYVGAINVLIIFAVMFMKGSEYSKDFNLWTVGNGVTFLVCTSIFVSLMTTIVDTSW 120
           AQLLIYVGAINVLIIFAVMFMKGSEYSKDFNLWTVGNGVTFLVCTSIFVSLMTTIVDTSW
Sbjct: 61  AQLLIYVGAINVLIIFAVMFMKGSEYSKDFNLWTVGNGVTFLVCTSIFVSLMTTIVDTSW 120

Query: 121 YGIIWTTRSNQILEQDLINNSQQIGIYLSTYFFLPFELISIILLAALIGAIAVARQ 177
           YGIIWTTRSNQILEQDLI+NSQQIGIYLSTYFFLPFELISIILLAALIGAIAVARQ
Sbjct: 121 YGIIWTTRSNQILEQDLISNSQQIGIYLSTYFFLPFELISIILLAALIGAIAVARQ 176

[Close]

BLAST of PI0024236 vs. ExPASy Swiss-Prot
Match: Q49KU5 (NAD(P)H-quinone oxidoreductase subunit 6, chloroplastic OS=Eucalyptus globulus subsp. globulus OX=71271 GN=ndhG PE=3 SV=1)

HSP 1 Score: 277.7 bits (709), Expect = 9.0e-74
Identity = 149/176 (84.66%), Postives = 162/176 (92.05%), Query Frame = 0


Query: 1   MDLPGPIHDFLVVLLGSGLILGSMGVLLFNNSIYSAFSLGLVLVSISLFYILANAQFVAA 60
           MDLPGPIHDFL+V LGSGLILGS+GV+L  N IYSAFSLGLVLV ISLFYIL+N+ FVAA
Sbjct: 1   MDLPGPIHDFLLVFLGSGLILGSLGVVLLTNPIYSAFSLGLVLVCISLFYILSNSHFVAA 60

Query: 61  AQLLIYVGAINVLIIFAVMFMKGSEYSKDFNLWTVGNGVTFLVCTSIFVSLMTTIVDTSW 120
           AQLLIYVGAIN+LI+FAVMFM GSEY KD NLWTVG+G+T LVCTSI VSLMTTI+DTSW
Sbjct: 61  AQLLIYVGAINILILFAVMFMNGSEYYKDLNLWTVGDGITSLVCTSILVSLMTTILDTSW 120

Query: 121 YGIIWTTRSNQILEQDLINNSQQIGIYLSTYFFLPFELISIILLAALIGAIAVARQ 177
           YGIIWTT+SNQI+EQDLI NSQQIGI+LST FFLPFELISIILL ALIGAIAVARQ
Sbjct: 121 YGIIWTTKSNQIIEQDLIGNSQQIGIHLSTDFFLPFELISIILLVALIGAIAVARQ 176

[Close]

BLAST of PI0024236 vs. ExPASy Swiss-Prot
Match: Q2L958 (NAD(P)H-quinone oxidoreductase subunit 6, chloroplastic OS=Gossypium hirsutum OX=3635 GN=ndhG PE=3 SV=1)

HSP 1 Score: 276.9 bits (707), Expect = 1.5e-73
Identity = 148/176 (84.09%), Postives = 162/176 (92.05%), Query Frame = 0


Query: 1   MDLPGPIHDFLVVLLGSGLILGSMGVLLFNNSIYSAFSLGLVLVSISLFYILANAQFVAA 60
           MDLPGPIHDFL+V LGSGLILG +GV+L  N IYSAFSLGLVLV ISLFYIL+N+ FVAA
Sbjct: 1   MDLPGPIHDFLLVFLGSGLILGGLGVVLLTNPIYSAFSLGLVLVCISLFYILSNSHFVAA 60

Query: 61  AQLLIYVGAINVLIIFAVMFMKGSEYSKDFNLWTVGNGVTFLVCTSIFVSLMTTIVDTSW 120
           AQLLIYVGAINVLI+FAVMFM GSEY KDFNLWT+GNG+T LVCTSI VSL+TTI+DTSW
Sbjct: 61  AQLLIYVGAINVLILFAVMFMNGSEYYKDFNLWTIGNGLTSLVCTSILVSLITTILDTSW 120

Query: 121 YGIIWTTRSNQILEQDLINNSQQIGIYLSTYFFLPFELISIILLAALIGAIAVARQ 177
           YGIIWTTRSNQI+EQDLI+NSQQIGI+L+T FFLPFE ISIILL ALIGAIAVARQ
Sbjct: 121 YGIIWTTRSNQIIEQDLISNSQQIGIHLATDFFLPFEFISIILLVALIGAIAVARQ 176

[Close]

BLAST of PI0024236 vs. ExPASy Swiss-Prot
Match: Q0ZIW5 (NAD(P)H-quinone oxidoreductase subunit 6, chloroplastic OS=Vitis vinifera OX=29760 GN=ndhG PE=3 SV=1)

HSP 1 Score: 275.4 bits (703), Expect = 4.5e-73
Identity = 149/176 (84.66%), Postives = 161/176 (91.48%), Query Frame = 0


Query: 1   MDLPGPIHDFLVVLLGSGLILGSMGVLLFNNSIYSAFSLGLVLVSISLFYILANAQFVAA 60
           MDLPGPIHDFL+V LGSGLILG +GV+L  N IYSAFSLGLV V ISLFYI +N+ FVAA
Sbjct: 1   MDLPGPIHDFLLVFLGSGLILGGLGVVLLTNPIYSAFSLGLVFVCISLFYIPSNSHFVAA 60

Query: 61  AQLLIYVGAINVLIIFAVMFMKGSEYSKDFNLWTVGNGVTFLVCTSIFVSLMTTIVDTSW 120
           AQLLIYVGAINVLIIFAVMFM GSEY KDFNLWTVG+GVT +VCTSIF SL+TTI+DTSW
Sbjct: 61  AQLLIYVGAINVLIIFAVMFMNGSEYYKDFNLWTVGDGVTSVVCTSIFASLITTILDTSW 120

Query: 121 YGIIWTTRSNQILEQDLINNSQQIGIYLSTYFFLPFELISIILLAALIGAIAVARQ 177
           YGIIWTTRSNQI+EQDLI+NSQQIGI+LST FFLPFELISIILL ALIGAIAVARQ
Sbjct: 121 YGIIWTTRSNQIIEQDLISNSQQIGIHLSTDFFLPFELISIILLVALIGAIAVARQ 176

[Close]

BLAST of PI0024236 vs. ExPASy Swiss-Prot
Match: Q09MC3 (NAD(P)H-quinone oxidoreductase subunit 6, chloroplastic OS=Citrus sinensis OX=2711 GN=ndhG PE=3 SV=1)

HSP 1 Score: 274.6 bits (701), Expect = 7.6e-73
Identity = 147/178 (82.58%), Postives = 165/178 (92.70%), Query Frame = 0


Query: 1   MDLPGPIHDFLVVLLGSGLILGSMGVLLFNNSIYSAFSLGLVLVSISLFYILANAQFVAA 60
           MDLPGPIHDF++V LGSGLILG +GV+LF N IYSAFSLGLVLV ISLFYIL+N+ FVAA
Sbjct: 1   MDLPGPIHDFILVFLGSGLILGGLGVVLFTNPIYSAFSLGLVLVCISLFYILSNSHFVAA 60

Query: 61  AQLLIYVGAINVLIIFAVMFMKGSEYSKDF--NLWTVGNGVTFLVCTSIFVSLMTTIVDT 120
           AQLLIYVGA+NVLIIFAVMFM GS+YSKDF  NLWT+G+G+T LVCTSIF SL+TTI+DT
Sbjct: 61  AQLLIYVGAVNVLIIFAVMFMNGSDYSKDFQLNLWTIGDGLTSLVCTSIFFSLITTILDT 120

Query: 121 SWYGIIWTTRSNQILEQDLINNSQQIGIYLSTYFFLPFELISIILLAALIGAIAVARQ 177
           SWYGIIWTTR+NQI+EQDLI+NSQQIGI+LST FFLPFEL+SIILL ALIGAIAVARQ
Sbjct: 121 SWYGIIWTTRANQIIEQDLISNSQQIGIHLSTDFFLPFELVSIILLVALIGAIAVARQ 178

[Close]

BLAST of PI0024236 vs. ExPASy TrEMBL
Match: A0A218KG81 (NAD(P)H-quinone oxidoreductase subunit 6, chloroplastic OS=Cucumis sativus var. hardwickii OX=319220 GN=ndhG PE=3 SV=1)

HSP 1 Score: 321.6 bits (823), Expect = 2.0e-84
Identity = 175/176 (99.43%), Postives = 176/176 (100.00%), Query Frame = 0


Query: 1   MDLPGPIHDFLVVLLGSGLILGSMGVLLFNNSIYSAFSLGLVLVSISLFYILANAQFVAA 60
           MDLPGPIHDFLVVLLGSGLILGSMGVLLFNNSIYSAFSLGLVLVSISLFYILANAQFVAA
Sbjct: 1   MDLPGPIHDFLVVLLGSGLILGSMGVLLFNNSIYSAFSLGLVLVSISLFYILANAQFVAA 60

Query: 61  AQLLIYVGAINVLIIFAVMFMKGSEYSKDFNLWTVGNGVTFLVCTSIFVSLMTTIVDTSW 120
           AQLLIYVGAINVLIIFAVMFMKGSEYSKDFNLWTVGNGVTFLVCTSIFVSLMTTIVDTSW
Sbjct: 61  AQLLIYVGAINVLIIFAVMFMKGSEYSKDFNLWTVGNGVTFLVCTSIFVSLMTTIVDTSW 120

Query: 121 YGIIWTTRSNQILEQDLINNSQQIGIYLSTYFFLPFELISIILLAALIGAIAVARQ 177
           YGIIWTTRSNQILEQDLI+NSQQIGIYLSTYFFLPFELISIILLAALIGAIAVARQ
Sbjct: 121 YGIIWTTRSNQILEQDLISNSQQIGIYLSTYFFLPFELISIILLAALIGAIAVARQ 176

[Close]

BLAST of PI0024236 vs. ExPASy TrEMBL
Match: A0A1X9Q1H7 (NAD(P)H-quinone oxidoreductase subunit 6, chloroplastic OS=Cucumis sativus OX=3659 GN=ndhG PE=3 SV=1)

HSP 1 Score: 321.6 bits (823), Expect = 2.0e-84
Identity = 175/176 (99.43%), Postives = 176/176 (100.00%), Query Frame = 0


Query: 1   MDLPGPIHDFLVVLLGSGLILGSMGVLLFNNSIYSAFSLGLVLVSISLFYILANAQFVAA 60
           MDLPGPIHDFLVVLLGSGLILGSMGVLLFNNSIYSAFSLGLVLVSISLFYILANAQFVAA
Sbjct: 1   MDLPGPIHDFLVVLLGSGLILGSMGVLLFNNSIYSAFSLGLVLVSISLFYILANAQFVAA 60

Query: 61  AQLLIYVGAINVLIIFAVMFMKGSEYSKDFNLWTVGNGVTFLVCTSIFVSLMTTIVDTSW 120
           AQLLIYVGAINVLIIFAVMFMKGSEYSKDFNLWTVGNGVTFLVCTSIFVSLMTTIVDTSW
Sbjct: 61  AQLLIYVGAINVLIIFAVMFMKGSEYSKDFNLWTVGNGVTFLVCTSIFVSLMTTIVDTSW 120

Query: 121 YGIIWTTRSNQILEQDLINNSQQIGIYLSTYFFLPFELISIILLAALIGAIAVARQ 177
           YGIIWTTRSNQILEQDLI+NSQQIGIYLSTYFFLPFELISIILLAALIGAIAVARQ
Sbjct: 121 YGIIWTTRSNQILEQDLISNSQQIGIYLSTYFFLPFELISIILLAALIGAIAVARQ 176

[Close]

BLAST of PI0024236 vs. ExPASy TrEMBL
Match: A0A1P8LEC8 (NADH dehydrogenase subunit 6 OS=Citrullus mucosospermus OX=519315 GN=ndhG PE=3 SV=1)

HSP 1 Score: 321.6 bits (823), Expect = 2.0e-84
Identity = 175/176 (99.43%), Postives = 176/176 (100.00%), Query Frame = 0


Query: 1   MDLPGPIHDFLVVLLGSGLILGSMGVLLFNNSIYSAFSLGLVLVSISLFYILANAQFVAA 60
           MDLPGPIHDFLVVLLGSGLILGSMGVLLFNNSIYSAFSLGLVLVSISLFYILANAQFVAA
Sbjct: 1   MDLPGPIHDFLVVLLGSGLILGSMGVLLFNNSIYSAFSLGLVLVSISLFYILANAQFVAA 60

Query: 61  AQLLIYVGAINVLIIFAVMFMKGSEYSKDFNLWTVGNGVTFLVCTSIFVSLMTTIVDTSW 120
           AQLLIYVGAINVLIIFAVMFMKGSEYSKDFNLWTVGNGVTFLVCTSIFVSLMTTIVDTSW
Sbjct: 61  AQLLIYVGAINVLIIFAVMFMKGSEYSKDFNLWTVGNGVTFLVCTSIFVSLMTTIVDTSW 120

Query: 121 YGIIWTTRSNQILEQDLINNSQQIGIYLSTYFFLPFELISIILLAALIGAIAVARQ 177
           YGIIWTTRSNQILEQDLI+NSQQIGIYLSTYFFLPFELISIILLAALIGAIAVARQ
Sbjct: 121 YGIIWTTRSNQILEQDLISNSQQIGIYLSTYFFLPFELISIILLAALIGAIAVARQ 176

[Close]

BLAST of PI0024236 vs. ExPASy TrEMBL
Match: W8E7U1 (NADH-plastoquinone oxidoreductase subunit 6 OS=Cucumis hystrix OX=396994 GN=ndhG PE=3 SV=1)

HSP 1 Score: 321.6 bits (823), Expect = 2.0e-84
Identity = 175/176 (99.43%), Postives = 176/176 (100.00%), Query Frame = 0


Query: 1   MDLPGPIHDFLVVLLGSGLILGSMGVLLFNNSIYSAFSLGLVLVSISLFYILANAQFVAA 60
           MDLPGPIHDFLVVLLGSGLILGSMGVLLFNNSIYSAFSLGLVLVSISLFYILANAQFVAA
Sbjct: 1   MDLPGPIHDFLVVLLGSGLILGSMGVLLFNNSIYSAFSLGLVLVSISLFYILANAQFVAA 60

Query: 61  AQLLIYVGAINVLIIFAVMFMKGSEYSKDFNLWTVGNGVTFLVCTSIFVSLMTTIVDTSW 120
           AQLLIYVGAINVLIIFAVMFMKGSEYSKDFNLWTVGNGVTFLVCTSIFVSLMTTIVDTSW
Sbjct: 61  AQLLIYVGAINVLIIFAVMFMKGSEYSKDFNLWTVGNGVTFLVCTSIFVSLMTTIVDTSW 120

Query: 121 YGIIWTTRSNQILEQDLINNSQQIGIYLSTYFFLPFELISIILLAALIGAIAVARQ 177
           YGIIWTTRSNQILEQDLI+NSQQIGIYLSTYFFLPFELISIILLAALIGAIAVARQ
Sbjct: 121 YGIIWTTRSNQILEQDLISNSQQIGIYLSTYFFLPFELISIILLAALIGAIAVARQ 176

[Close]

BLAST of PI0024236 vs. ExPASy TrEMBL
Match: A0A1P8LFK1 (NADH dehydrogenase subunit 6 OS=Citrullus lanatus subsp. vulgaris OX=260674 GN=ndhG PE=3 SV=1)

HSP 1 Score: 321.6 bits (823), Expect = 2.0e-84
Identity = 175/176 (99.43%), Postives = 176/176 (100.00%), Query Frame = 0


Query: 1   MDLPGPIHDFLVVLLGSGLILGSMGVLLFNNSIYSAFSLGLVLVSISLFYILANAQFVAA 60
           MDLPGPIHDFLVVLLGSGLILGSMGVLLFNNSIYSAFSLGLVLVSISLFYILANAQFVAA
Sbjct: 1   MDLPGPIHDFLVVLLGSGLILGSMGVLLFNNSIYSAFSLGLVLVSISLFYILANAQFVAA 60

Query: 61  AQLLIYVGAINVLIIFAVMFMKGSEYSKDFNLWTVGNGVTFLVCTSIFVSLMTTIVDTSW 120
           AQLLIYVGAINVLIIFAVMFMKGSEYSKDFNLWTVGNGVTFLVCTSIFVSLMTTIVDTSW
Sbjct: 61  AQLLIYVGAINVLIIFAVMFMKGSEYSKDFNLWTVGNGVTFLVCTSIFVSLMTTIVDTSW 120

Query: 121 YGIIWTTRSNQILEQDLINNSQQIGIYLSTYFFLPFELISIILLAALIGAIAVARQ 177
           YGIIWTTRSNQILEQDLI+NSQQIGIYLSTYFFLPFELISIILLAALIGAIAVARQ
Sbjct: 121 YGIIWTTRSNQILEQDLISNSQQIGIYLSTYFFLPFELISIILLAALIGAIAVARQ 176

[Close]

BLAST of PI0024236 vs. NCBI nr
Match: YP_009004094.1 (NADH-plastoquinone oxidoreductase subunit 6 [Cucumis hystrix] >YP_009326043.1 NADH dehydrogenase subunit 6 [Citrullus lanatus] >YP_009346530.1 NADH-plastoquinone oxidoreductase subunit 6 [Cucumis x hytivus] >YP_009348085.1 NADH dehydrogenase subunit 6 [Citrullus mucosospermus] >YP_009420848.1 NADH dehydrogenase subunit 6 [Citrullus colocynthis] >YP_009431610.1 NADH dehydrogenase subunit 6 [Citrullus amarus] >YP_009431696.1 NADH dehydrogenase subunit 6 [Citrullus rehmii] >Q2QD38.1 RecName: Full=NAD(P)H-quinone oxidoreductase subunit 6, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit 6; AltName: Full=NADH-plastoquinone oxidoreductase subunit 6 [Cucumis sativus] >ALF03354.1 NADH dehydrogenase subunit 6 [Cucumis sativus var. hardwickii] >APW82516.1 NADH dehydrogenase subunit 6 [Citrullus lanatus subsp. vulgaris] >ASY96396.1 NADH dehydrogenase subunit 6 [Cucumis melo subsp. agrestis] >AVE15385.1 NdhG [Cucumis sativus var. sativus] >QZL38648.1 NADH dehydrogenase subunit G [Citrullus naudinianus] >QZL38736.1 NADH dehydrogenase subunit G [Citrullus ecirrhosus])

HSP 1 Score: 321.6 bits (823), Expect = 4.1e-84
Identity = 175/176 (99.43%), Postives = 176/176 (100.00%), Query Frame = 0


Query: 1   MDLPGPIHDFLVVLLGSGLILGSMGVLLFNNSIYSAFSLGLVLVSISLFYILANAQFVAA 60
           MDLPGPIHDFLVVLLGSGLILGSMGVLLFNNSIYSAFSLGLVLVSISLFYILANAQFVAA
Sbjct: 1   MDLPGPIHDFLVVLLGSGLILGSMGVLLFNNSIYSAFSLGLVLVSISLFYILANAQFVAA 60

Query: 61  AQLLIYVGAINVLIIFAVMFMKGSEYSKDFNLWTVGNGVTFLVCTSIFVSLMTTIVDTSW 120
           AQLLIYVGAINVLIIFAVMFMKGSEYSKDFNLWTVGNGVTFLVCTSIFVSLMTTIVDTSW
Sbjct: 61  AQLLIYVGAINVLIIFAVMFMKGSEYSKDFNLWTVGNGVTFLVCTSIFVSLMTTIVDTSW 120

Query: 121 YGIIWTTRSNQILEQDLINNSQQIGIYLSTYFFLPFELISIILLAALIGAIAVARQ 177
           YGIIWTTRSNQILEQDLI+NSQQIGIYLSTYFFLPFELISIILLAALIGAIAVARQ
Sbjct: 121 YGIIWTTRSNQILEQDLISNSQQIGIYLSTYFFLPFELISIILLAALIGAIAVARQ 176

[Close]

BLAST of PI0024236 vs. NCBI nr
Match: YP_009456200.1 (NADH dehydrogenase subunit 6 [Lagenaria siceraria] >AUJ21965.1 NADH dehydrogenase subunit 6 [Lagenaria siceraria] >QNM38585.1 NADH-plastoquinone oxidoreductase subunit 6 [Lagenaria siceraria var. microcarpa])

HSP 1 Score: 321.2 bits (822), Expect = 5.4e-84
Identity = 174/176 (98.86%), Postives = 176/176 (100.00%), Query Frame = 0


Query: 1   MDLPGPIHDFLVVLLGSGLILGSMGVLLFNNSIYSAFSLGLVLVSISLFYILANAQFVAA 60
           MDLPGPIHDFLVVLLGSGLILGSMGVLLFNNSIYSAFSLGLVLVSISLFYILANAQFVAA
Sbjct: 1   MDLPGPIHDFLVVLLGSGLILGSMGVLLFNNSIYSAFSLGLVLVSISLFYILANAQFVAA 60

Query: 61  AQLLIYVGAINVLIIFAVMFMKGSEYSKDFNLWTVGNGVTFLVCTSIFVSLMTTIVDTSW 120
           AQLLIYVGAINVLIIFAVMFMKGSEYSKDFNLWT+GNGVTFLVCTSIFVSLMTTIVDTSW
Sbjct: 61  AQLLIYVGAINVLIIFAVMFMKGSEYSKDFNLWTIGNGVTFLVCTSIFVSLMTTIVDTSW 120

Query: 121 YGIIWTTRSNQILEQDLINNSQQIGIYLSTYFFLPFELISIILLAALIGAIAVARQ 177
           YGIIWTTRSNQILEQDLI+NSQQIGIYLSTYFFLPFELISIILLAALIGAIAVARQ
Sbjct: 121 YGIIWTTRSNQILEQDLISNSQQIGIYLSTYFFLPFELISIILLAALIGAIAVARQ 176

[Close]

BLAST of PI0024236 vs. NCBI nr
Match: QHB76018.1 (NADH dehydrogenase subunit 6 [Cucumis melo subsp. melo])

HSP 1 Score: 320.9 bits (821), Expect = 7.1e-84
Identity = 174/176 (98.86%), Postives = 176/176 (100.00%), Query Frame = 0


Query: 1   MDLPGPIHDFLVVLLGSGLILGSMGVLLFNNSIYSAFSLGLVLVSISLFYILANAQFVAA 60
           MDLPGPIHDFLVVLLGSG+ILGSMGVLLFNNSIYSAFSLGLVLVSISLFYILANAQFVAA
Sbjct: 1   MDLPGPIHDFLVVLLGSGIILGSMGVLLFNNSIYSAFSLGLVLVSISLFYILANAQFVAA 60

Query: 61  AQLLIYVGAINVLIIFAVMFMKGSEYSKDFNLWTVGNGVTFLVCTSIFVSLMTTIVDTSW 120
           AQLLIYVGAINVLIIFAVMFMKGSEYSKDFNLWTVGNGVTFLVCTSIFVSLMTTIVDTSW
Sbjct: 61  AQLLIYVGAINVLIIFAVMFMKGSEYSKDFNLWTVGNGVTFLVCTSIFVSLMTTIVDTSW 120

Query: 121 YGIIWTTRSNQILEQDLINNSQQIGIYLSTYFFLPFELISIILLAALIGAIAVARQ 177
           YGIIWTTRSNQILEQDLI+NSQQIGIYLSTYFFLPFELISIILLAALIGAIAVARQ
Sbjct: 121 YGIIWTTRSNQILEQDLISNSQQIGIYLSTYFFLPFELISIILLAALIGAIAVARQ 176

[Close]

BLAST of PI0024236 vs. NCBI nr
Match: YP_010131145.1 (NADH-plastoquinone oxidoreductase subunit 6 [Benincasa hispida] >QPZ75793.1 NADH-plastoquinone oxidoreductase subunit 6 [Benincasa hispida] >QSQ72364.1 NADH dehydrogenase subunit G [Benincasa hispida])

HSP 1 Score: 320.9 bits (821), Expect = 7.1e-84
Identity = 174/176 (98.86%), Postives = 176/176 (100.00%), Query Frame = 0


Query: 1   MDLPGPIHDFLVVLLGSGLILGSMGVLLFNNSIYSAFSLGLVLVSISLFYILANAQFVAA 60
           MDLPGPIHDFLVVLLGSGLILGSMGVLLFNNSIYSAFSLGLVLVSISLFYILANAQFVAA
Sbjct: 1   MDLPGPIHDFLVVLLGSGLILGSMGVLLFNNSIYSAFSLGLVLVSISLFYILANAQFVAA 60

Query: 61  AQLLIYVGAINVLIIFAVMFMKGSEYSKDFNLWTVGNGVTFLVCTSIFVSLMTTIVDTSW 120
           AQLLIYVGAINVLIIFAVMFMKGSEYSKDFNLWTVGNGVTFLVCTS+FVSLMTTIVDTSW
Sbjct: 61  AQLLIYVGAINVLIIFAVMFMKGSEYSKDFNLWTVGNGVTFLVCTSLFVSLMTTIVDTSW 120

Query: 121 YGIIWTTRSNQILEQDLINNSQQIGIYLSTYFFLPFELISIILLAALIGAIAVARQ 177
           YGIIWTTRSNQILEQDLI+NSQQIGIYLSTYFFLPFELISIILLAALIGAIAVARQ
Sbjct: 121 YGIIWTTRSNQILEQDLISNSQQIGIYLSTYFFLPFELISIILLAALIGAIAVARQ 176

[Close]

BLAST of PI0024236 vs. NCBI nr
Match: YP_009317439.1 (NADH dehydrogenase subunit 6 [Coccinia grandis] >AOX48754.1 NADH dehydrogenase subunit 6 [Coccinia grandis] >AOX48839.1 NADH dehydrogenase subunit 6 [Coccinia grandis])

HSP 1 Score: 320.5 bits (820), Expect = 9.2e-84
Identity = 174/176 (98.86%), Postives = 176/176 (100.00%), Query Frame = 0


Query: 1   MDLPGPIHDFLVVLLGSGLILGSMGVLLFNNSIYSAFSLGLVLVSISLFYILANAQFVAA 60
           MDLPGPIHDFLVVLLGSGLILGSMGVLLFNNSIYSAFSLGLVLVSISLFYILANAQFVAA
Sbjct: 1   MDLPGPIHDFLVVLLGSGLILGSMGVLLFNNSIYSAFSLGLVLVSISLFYILANAQFVAA 60

Query: 61  AQLLIYVGAINVLIIFAVMFMKGSEYSKDFNLWTVGNGVTFLVCTSIFVSLMTTIVDTSW 120
           AQLLIYVGAINVLIIFAVMFMKGSEYSKDFNLWTVGNGVTFLVCTSIFVSLMTTI+DTSW
Sbjct: 61  AQLLIYVGAINVLIIFAVMFMKGSEYSKDFNLWTVGNGVTFLVCTSIFVSLMTTILDTSW 120

Query: 121 YGIIWTTRSNQILEQDLINNSQQIGIYLSTYFFLPFELISIILLAALIGAIAVARQ 177
           YGIIWTTRSNQILEQDLI+NSQQIGIYLSTYFFLPFELISIILLAALIGAIAVARQ
Sbjct: 121 YGIIWTTRSNQILEQDLISNSQQIGIYLSTYFFLPFELISIILLAALIGAIAVARQ 176

[Close]

BLAST of PI0024236 vs. TAIR 10
Match: ATCG01080.1 (NADH:ubiquinone/plastoquinone oxidoreductase, chain 6 )

HSP 1 Score: 260.8 bits (665), Expect = 8.1e-70
Identity = 139/176 (78.98%), Postives = 157/176 (89.20%), Query Frame = 0


Query: 1   MDLPGPIHDFLVVLLGSGLILGSMGVLLFNNSIYSAFSLGLVLVSISLFYILANAQFVAA 60
           MDLPGPIHDFL+V LGSGL++G +GV+L  N I+SAFSLG VLV ISL YIL+N+ FVAA
Sbjct: 1   MDLPGPIHDFLLVFLGSGLLVGGLGVVLLPNPIFSAFSLGFVLVCISLLYILSNSHFVAA 60

Query: 61  AQLLIYVGAINVLIIFAVMFMKGSEYSKDFNLWTVGNGVTFLVCTSIFVSLMTTIVDTSW 120
           AQLLIYVGAINVLIIFAVMFM  SEYS DFNLWT+GNG+T LVCT+I   LM+TI+DTSW
Sbjct: 61  AQLLIYVGAINVLIIFAVMFMNDSEYSTDFNLWTIGNGITSLVCTTILFLLMSTILDTSW 120

Query: 121 YGIIWTTRSNQILEQDLINNSQQIGIYLSTYFFLPFELISIILLAALIGAIAVARQ 177
           YG+IWTT+ NQILEQDLI+NSQQIGI+LST FFLPFELISIILL ALIGAI+VARQ
Sbjct: 121 YGVIWTTKLNQILEQDLISNSQQIGIHLSTDFFLPFELISIILLVALIGAISVARQ 176

The following BLAST results are available for this feature:

BLAST of PI0024236 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q2QD38	5.4e-87	99.43	NAD(P)H-quinone oxidoreductase subunit 6, chloroplastic OS=Cucumis sativus OX=36...	[more]
Q49KU5	9.0e-74	84.66	NAD(P)H-quinone oxidoreductase subunit 6, chloroplastic OS=Eucalyptus globulus s...	[more]
Q2L958	1.5e-73	84.09	NAD(P)H-quinone oxidoreductase subunit 6, chloroplastic OS=Gossypium hirsutum OX...	[more]
Q0ZIW5	4.5e-73	84.66	NAD(P)H-quinone oxidoreductase subunit 6, chloroplastic OS=Vitis vinifera OX=297...	[more]
Q09MC3	7.6e-73	82.58	NAD(P)H-quinone oxidoreductase subunit 6, chloroplastic OS=Citrus sinensis OX=27...	[more]

BLAST of PI0024236 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A218KG81	2.0e-84	99.43	NAD(P)H-quinone oxidoreductase subunit 6, chloroplastic OS=Cucumis sativus var. ...	[more]
A0A1X9Q1H7	2.0e-84	99.43	NAD(P)H-quinone oxidoreductase subunit 6, chloroplastic OS=Cucumis sativus OX=36...	[more]
A0A1P8LEC8	2.0e-84	99.43	NADH dehydrogenase subunit 6 OS=Citrullus mucosospermus OX=519315 GN=ndhG PE=3 S...	[more]
W8E7U1	2.0e-84	99.43	NADH-plastoquinone oxidoreductase subunit 6 OS=Cucumis hystrix OX=396994 GN=ndhG...	[more]
A0A1P8LFK1	2.0e-84	99.43	NADH dehydrogenase subunit 6 OS=Citrullus lanatus subsp. vulgaris OX=260674 GN=n...	[more]

BLAST of PI0024236 vs. NCBI nr


Match Name	E-value	Identity	Description
YP_009004094.1	4.1e-84	99.43	NADH-plastoquinone oxidoreductase subunit 6 [Cucumis hystrix] >YP_009326043.1 NA...	[more]
YP_009456200.1	5.4e-84	98.86	NADH dehydrogenase subunit 6 [Lagenaria siceraria] >AUJ21965.1 NADH dehydrogenas...	[more]
QHB76018.1	7.1e-84	98.86	NADH dehydrogenase subunit 6 [Cucumis melo subsp. melo]	[more]
YP_010131145.1	7.1e-84	98.86	NADH-plastoquinone oxidoreductase subunit 6 [Benincasa hispida] >QPZ75793.1 NADH...	[more]
YP_009317439.1	9.2e-84	98.86	NADH dehydrogenase subunit 6 [Coccinia grandis] >AOX48754.1 NADH dehydrogenase s...	[more]

BLAST of PI0024236 vs. TAIR 10


Match Name	E-value	Identity	Description
ATCG01080.1	8.1e-70	78.98	NADH:ubiquinone/plastoquinone oxidoreductase, chain 6	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001457	NADH:ubiquinone/plastoquinone oxidoreductase, chain 6	PFAM	PF00499	Oxidored_q3	coord: 23..172 e-value: 1.4E-29 score: 102.7
IPR042106	NADH-ubiquinone/plastoquinone oxidoreductase chain 6, subunit NuoJ	GENE3D	1.20.120.1200		coord: 8..175 e-value: 1.8E-33 score: 117.3
None	No IPR available	PANTHER	PTHR33269:SF5	NADH-UBIQUINONE OXIDOREDUCTASE CHAIN 6	coord: 1..176
None	No IPR available	PANTHER	PTHR33269	NADH-UBIQUINONE OXIDOREDUCTASE CHAIN 6	coord: 1..176

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
PI0024236.1	PI0024236.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0022900	electron transport chain
cellular_component	GO:0009535	chloroplast thylakoid membrane
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0008137	NADH dehydrogenase (ubiquinone) activity
molecular_function	GO:0048038	quinone binding