PI0023624 (gene) Melon (PI 482460) v1

Overview


Name	PI0023624
Type	gene
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	Gag-pro-like protein
Location	chr11: 23022544 .. 23022786 (-)
RNA-Seq Expression	PI0023624
Synteny	PI0023624

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAGAACAAGACAAAGACAAGGATAAAATGAGACAAGAGATTAATAACCTTGGGGATGAAGTTTCAAAAATACTAGAATTGCTTTCAACGGGAAAAGGGAAAGTCATTGTAGATACCACACAATCAAGCAATCCAATTCAGGACAATGATGATCCCATTTATCCTCTAGGATTTACGCCATCCCACATGCATGTTTTGCAGTCTCAAACCATTCAACACTATGTTGCTATGAACCTCTAG

mRNA sequence

ATGGAAGAACAAGACAAAGACAAGGATAAAATGAGACAAGAGATTAATAACCTTGGGGATGAAGTTTCAAAAATACTAGAATTGCTTTCAACGGGAAAAGGGAAAGTCATTGTAGATACCACACAATCAAGCAATCCAATTCAGGACAATGATGATCCCATTTATCCTCTAGGATTTACGCCATCCCACATGCATGTTTTGCAGTCTCAAACCATTCAACACTATGTTGCTATGAACCTCTAG

Coding sequence (CDS)

ATGGAAGAACAAGACAAAGACAAGGATAAAATGAGACAAGAGATTAATAACCTTGGGGATGAAGTTTCAAAAATACTAGAATTGCTTTCAACGGGAAAAGGGAAAGTCATTGTAGATACCACACAATCAAGCAATCCAATTCAGGACAATGATGATCCCATTTATCCTCTAGGATTTACGCCATCCCACATGCATGTTTTGCAGTCTCAAACCATTCAACACTATGTTGCTATGAACCTCTAG

Protein sequence

MEEQDKDKDKMRQEINNLGDEVSKILELLSTGKGKVIVDTTQSSNPIQDNDDPIYPLGFTPSHMHVLQSQTIQHYVAMNL

Homology

[Close]

BLAST of PI0023624 vs. ExPASy TrEMBL
Match: A0A5A7TGG5 (Putative RNA-directed DNA polymerase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold334G00070 PE=4 SV=1)

HSP 1 Score: 131.7 bits (330), Expect = 1.3e-27
Identity = 66/80 (82.50%), Postives = 72/80 (90.00%), Query Frame = 0


Query: 1  MEEQDKDKDKMRQEINNLGDEVSKILELLSTGKGKVIVDTTQSSNPIQDNDDPIYPLGFT 60
          M+EQDKD DKMRQEINNLG++VSKILELLS GKGKV+VDTTQSSNPIQD DDPIYP GFT
Sbjct: 1  MKEQDKDMDKMRQEINNLGEQVSKILELLSMGKGKVVVDTTQSSNPIQDTDDPIYPPGFT 60

Query: 61 PSHMHVLQSQTIQHYVAMNL 81
          P HM+V QSQT QHYV+ NL
Sbjct: 61 PCHMNVPQSQTTQHYVSTNL 80

[Close]

BLAST of PI0023624 vs. ExPASy TrEMBL
Match: A0A5A7USL0 (Gag-pro-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1607G00800 PE=4 SV=1)

HSP 1 Score: 129.4 bits (324), Expect = 6.6e-27
Identity = 65/79 (82.28%), Postives = 70/79 (88.61%), Query Frame = 0


Query: 1  MEEQDKDKDKMRQEINNLGDEVSKILELLSTGKGKVIVDTTQSSNPIQDNDDPIYPLGFT 60
          MEEQDKD DKMRQEINNLG++VSKILELLS GKGKV+VDTTQSSNP+QD DDPIY  GFT
Sbjct: 1  MEEQDKDMDKMRQEINNLGEQVSKILELLSMGKGKVVVDTTQSSNPVQDTDDPIYSPGFT 60

Query: 61 PSHMHVLQSQTIQHYVAMN 80
          P HM+V QSQT QHYVA N
Sbjct: 61 PCHMNVPQSQTTQHYVATN 79

[Close]

BLAST of PI0023624 vs. ExPASy TrEMBL
Match: A0A5A7U5D0 (Gag-pro-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1811G00050 PE=4 SV=1)

HSP 1 Score: 128.3 bits (321), Expect = 1.5e-26
Identity = 64/80 (80.00%), Postives = 71/80 (88.75%), Query Frame = 0


Query: 1  MEEQDKDKDKMRQEINNLGDEVSKILELLSTGKGKVIVDTTQSSNPIQDNDDPIYPLGFT 60
          MEEQDKD DKMRQEINNL ++VSKIL+LLS GKGKV+VD TQSSNP+QD DDPIYPLGFT
Sbjct: 1  MEEQDKDMDKMRQEINNLREQVSKILDLLSMGKGKVVVDKTQSSNPVQDTDDPIYPLGFT 60

Query: 61 PSHMHVLQSQTIQHYVAMNL 81
          P HM+V QSQT QHYVA +L
Sbjct: 61 PCHMNVPQSQTTQHYVATDL 80

[Close]

BLAST of PI0023624 vs. ExPASy TrEMBL
Match: A0A5D3DLA4 (RNA-directed DNA polymerase (Reverse transcriptase), Ribonuclease H-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold205G002100 PE=4 SV=1)

HSP 1 Score: 127.1 bits (318), Expect = 3.3e-26
Identity = 64/79 (81.01%), Postives = 70/79 (88.61%), Query Frame = 0


Query: 1  MEEQDKDKDKMRQEINNLGDEVSKILELLSTGKGKVIVDTTQSSNPIQDNDDPIYPLGFT 60
          MEEQDK+ DKMRQEINNLG++VSKILELLS GKGKV+VDTTQSSNPIQD DD +YPLGFT
Sbjct: 1  MEEQDKNMDKMRQEINNLGEQVSKILELLSMGKGKVVVDTTQSSNPIQDTDDSVYPLGFT 60

Query: 61 PSHMHVLQSQTIQHYVAMN 80
            HM+V QSQT QHYVA N
Sbjct: 61 SCHMNVPQSQTTQHYVATN 79

[Close]

BLAST of PI0023624 vs. ExPASy TrEMBL
Match: A0A5A7T9N7 (Gag-pro-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold36G003730 PE=4 SV=1)

HSP 1 Score: 127.1 bits (318), Expect = 3.3e-26
Identity = 64/79 (81.01%), Postives = 70/79 (88.61%), Query Frame = 0


Query: 1  MEEQDKDKDKMRQEINNLGDEVSKILELLSTGKGKVIVDTTQSSNPIQDNDDPIYPLGFT 60
          MEE+DKD DKMRQEINNLG++VSKILELLS GKGKV+VDT QSSNPIQD DDPI+P GFT
Sbjct: 1  MEEKDKDMDKMRQEINNLGEQVSKILELLSMGKGKVVVDTIQSSNPIQDTDDPIFPPGFT 60

Query: 61 PSHMHVLQSQTIQHYVAMN 80
          P HM+V QSQTIQHYV  N
Sbjct: 61 PYHMNVPQSQTIQHYVPTN 79

[Close]

BLAST of PI0023624 vs. NCBI nr
Match: KAA0042502.1 (putative RNA-directed DNA polymerase [Cucumis melo var. makuwa] >TYK22872.1 putative RNA-directed DNA polymerase [Cucumis melo var. makuwa])

HSP 1 Score: 131.7 bits (330), Expect = 2.8e-27
Identity = 66/80 (82.50%), Postives = 72/80 (90.00%), Query Frame = 0


Query: 1  MEEQDKDKDKMRQEINNLGDEVSKILELLSTGKGKVIVDTTQSSNPIQDNDDPIYPLGFT 60
          M+EQDKD DKMRQEINNLG++VSKILELLS GKGKV+VDTTQSSNPIQD DDPIYP GFT
Sbjct: 1  MKEQDKDMDKMRQEINNLGEQVSKILELLSMGKGKVVVDTTQSSNPIQDTDDPIYPPGFT 60

Query: 61 PSHMHVLQSQTIQHYVAMNL 81
          P HM+V QSQT QHYV+ NL
Sbjct: 61 PCHMNVPQSQTTQHYVSTNL 80

[Close]

BLAST of PI0023624 vs. NCBI nr
Match: XP_031741309.1 (LOW QUALITY PROTEIN: uncharacterized protein LOC105435093 [Cucumis sativus])

HSP 1 Score: 129.8 bits (325), Expect = 1.1e-26
Identity = 63/79 (79.75%), Postives = 70/79 (88.61%), Query Frame = 0


Query: 1  MEEQDKDKDKMRQEINNLGDEVSKILELLSTGKGKVIVDTTQSSNPIQDNDDPIYPLGFT 60
          MEEQDKD DKMRQ+INNLG++VSKILELLS GKGKV+V+T QSSNP+QD DDPIYP GFT
Sbjct: 1  MEEQDKDMDKMRQDINNLGEQVSKILELLSAGKGKVVVETAQSSNPVQDTDDPIYPPGFT 60

Query: 61 PSHMHVLQSQTIQHYVAMN 80
          P HM+  QSQT QHYVAMN
Sbjct: 61 PRHMNATQSQTAQHYVAMN 79

[Close]

BLAST of PI0023624 vs. NCBI nr
Match: XP_031738857.1 (LOW QUALITY PROTEIN: uncharacterized protein LOC116402780 [Cucumis sativus])

HSP 1 Score: 129.8 bits (325), Expect = 1.1e-26
Identity = 63/79 (79.75%), Postives = 70/79 (88.61%), Query Frame = 0


Query: 1  MEEQDKDKDKMRQEINNLGDEVSKILELLSTGKGKVIVDTTQSSNPIQDNDDPIYPLGFT 60
          MEEQDKD DKMRQ+INNLG++VSKILELLS GKGKV+V+T QSSNP+QD DDPIYP GFT
Sbjct: 1  MEEQDKDMDKMRQDINNLGEQVSKILELLSAGKGKVVVETAQSSNPVQDTDDPIYPPGFT 60

Query: 61 PSHMHVLQSQTIQHYVAMN 80
          P HM+  QSQT QHYVAMN
Sbjct: 61 PRHMNATQSQTAQHYVAMN 79

[Close]

BLAST of PI0023624 vs. NCBI nr
Match: XP_031737553.1 (LOW QUALITY PROTEIN: uncharacterized protein LOC116402446 [Cucumis sativus])

HSP 1 Score: 129.8 bits (325), Expect = 1.1e-26
Identity = 63/79 (79.75%), Postives = 70/79 (88.61%), Query Frame = 0


Query: 1  MEEQDKDKDKMRQEINNLGDEVSKILELLSTGKGKVIVDTTQSSNPIQDNDDPIYPLGFT 60
          MEEQDKD DKMRQ+INNLG++VSKILELLS GKGKV+V+T QSSNP+QD DDPIYP GFT
Sbjct: 1  MEEQDKDMDKMRQDINNLGEQVSKILELLSAGKGKVVVETAQSSNPVQDTDDPIYPPGFT 60

Query: 61 PSHMHVLQSQTIQHYVAMN 80
          P HM+  QSQT QHYVAMN
Sbjct: 61 PRHMNATQSQTAQHYVAMN 79

[Close]

BLAST of PI0023624 vs. NCBI nr
Match: XP_031742360.1 (uncharacterized protein LOC116404324 [Cucumis sativus])

HSP 1 Score: 129.8 bits (325), Expect = 1.1e-26
Identity = 63/79 (79.75%), Postives = 70/79 (88.61%), Query Frame = 0


Query: 1  MEEQDKDKDKMRQEINNLGDEVSKILELLSTGKGKVIVDTTQSSNPIQDNDDPIYPLGFT 60
          MEEQDKD DKMRQ+INNLG++VSKILELLS GKGKV+V+T QSSNP+QD DDPIYP GFT
Sbjct: 1  MEEQDKDMDKMRQDINNLGEQVSKILELLSAGKGKVVVETAQSSNPVQDTDDPIYPPGFT 60

Query: 61 PSHMHVLQSQTIQHYVAMN 80
          P HM+  QSQT QHYVAMN
Sbjct: 61 PRHMNATQSQTAQHYVAMN 79

The following BLAST results are available for this feature:

BLAST of PI0023624 vs.


Match Name	E-value	Identity	Description

BLAST of PI0023624 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7TGG5	1.3e-27	82.50	Putative RNA-directed DNA polymerase OS=Cucumis melo var. makuwa OX=1194695 GN=E...	[more]
A0A5A7USL0	6.6e-27	82.28	Gag-pro-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold160...	[more]
A0A5A7U5D0	1.5e-26	80.00	Gag-pro-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold181...	[more]
A0A5D3DLA4	3.3e-26	81.01	RNA-directed DNA polymerase (Reverse transcriptase), Ribonuclease H-like protein...	[more]
A0A5A7T9N7	3.3e-26	81.01	Gag-pro-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold36G...	[more]

BLAST of PI0023624 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0042502.1	2.8e-27	82.50	putative RNA-directed DNA polymerase [Cucumis melo var. makuwa] >TYK22872.1 puta...	[more]
XP_031741309.1	1.1e-26	79.75	LOW QUALITY PROTEIN: uncharacterized protein LOC105435093 [Cucumis sativus]	[more]
XP_031738857.1	1.1e-26	79.75	LOW QUALITY PROTEIN: uncharacterized protein LOC116402780 [Cucumis sativus]	[more]
XP_031737553.1	1.1e-26	79.75	LOW QUALITY PROTEIN: uncharacterized protein LOC116402446 [Cucumis sativus]	[more]
XP_031742360.1	1.1e-26	79.75	uncharacterized protein LOC116404324 [Cucumis sativus]	[more]

BLAST of PI0023624 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 1..28

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
PI0023624.1	PI0023624.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006310	DNA recombination
biological_process	GO:0006278	RNA-dependent DNA biosynthetic process
biological_process	GO:0090502	RNA phosphodiester bond hydrolysis, endonucleolytic
molecular_function	GO:0003887	DNA-directed DNA polymerase activity
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003964	RNA-directed DNA polymerase activity
molecular_function	GO:0004523	RNA-DNA hybrid ribonuclease activity