Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCTACATCCTCATCTTCCTTTCCCACTCCGACTAATGTCTCTCTTCCACCTATTTCTTCTATCATTGCACCCACCCCCAAGGACCATAATGAAGTTTTGCACAACTCTATTCCAGTTACTACTAATTCTAAGAATCCAAATTCTACTAATGTGTATCCTTTAGATACAGGTTCTCATGTAGTTTTGCAGGACCAAGACTATCCTTCTTCCCCTATGCCAACTATCTCATTGATGGGGAATTATGAATCTTCATCCTCTATGGTTCATTCCCCTATTGATGCTCTTCATGCTATCAATGCTCATCCTATGATGACTCGTGGTAAGTGTGACATTTTTAAATCTAAGGCATACTTAGTTGATTATACCTAA
mRNA sequence
ATGTCTACATCCTCATCTTCCTTTCCCACTCCGACTAATGTCTCTCTTCCACCTATTTCTTCTATCATTGCACCCACCCCCAAGGACCATAATGAAGTTTTGCACAACTCTATTCCAGTTACTACTAATTCTAAGAATCCAAATTCTACTAATGTGTATCCTTTAGATACAGGTTCTCATGTAGTTTTGCAGGACCAAGACTATCCTTCTTCCCCTATGCCAACTATCTCATTGATGGGGAATTATGAATCTTCATCCTCTATGGTTCATTCCCCTATTGATGCTCTTCATGCTATCAATGCTCATCCTATGATGACTCGTGGTAAGTGTGACATTTTTAAATCTAAGGCATACTTAGTTGATTATACCTAA
Coding sequence (CDS)
ATGTCTACATCCTCATCTTCCTTTCCCACTCCGACTAATGTCTCTCTTCCACCTATTTCTTCTATCATTGCACCCACCCCCAAGGACCATAATGAAGTTTTGCACAACTCTATTCCAGTTACTACTAATTCTAAGAATCCAAATTCTACTAATGTGTATCCTTTAGATACAGGTTCTCATGTAGTTTTGCAGGACCAAGACTATCCTTCTTCCCCTATGCCAACTATCTCATTGATGGGGAATTATGAATCTTCATCCTCTATGGTTCATTCCCCTATTGATGCTCTTCATGCTATCAATGCTCATCCTATGATGACTCGTGGTAAGTGTGACATTTTTAAATCTAAGGCATACTTAGTTGATTATACCTAA
Protein sequence
MSTSSSSFPTPTNVSLPPISSIIAPTPKDHNEVLHNSIPVTTNSKNPNSTNVYPLDTGSHVVLQDQDYPSSPMPTISLMGNYESSSSMVHSPIDALHAINAHPMMTRGKCDIFKSKAYLVDYT
Homology
BLAST of PI0023060 vs. ExPASy TrEMBL
Match:
A0A5D3CTU1 (Putative mitochondrial protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold186G00670 PE=4 SV=1)
HSP 1 Score: 114.0 bits (284), Expect = 4.4e-22
Identity = 67/95 (70.53%), Postives = 73/95 (76.84%), Query Frame = 0
Query: 1 MSTSSSSFPTPTNVSLPPISSIIAPTPKDHNEVLHNSIPVTTNSKNPNSTNVYPLDTGSH 60
M+T SSS TPT VSLPPISSIIAPTPKDHNEVL NSI + NSKNPNSTNVYPLDTGS+
Sbjct: 1 MNTPSSSSITPTIVSLPPISSIIAPTPKDHNEVLPNSILIPNNSKNPNSTNVYPLDTGSN 60
Query: 61 VVLQDQDYPSSPMPTISLMGNYESSSSMVHSPIDA 96
VLQD D P S MGNY++SSSM S ID+
Sbjct: 61 EVLQDHDDPP------STMGNYKTSSSMASSLIDS 89
BLAST of PI0023060 vs. ExPASy TrEMBL
Match:
A0A0A0KYW3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G432470 PE=4 SV=1)
HSP 1 Score: 107.1 bits (266), Expect = 5.4e-20
Identity = 63/95 (66.32%), Postives = 70/95 (73.68%), Query Frame = 0
Query: 5 SSSFPTPTNVSLPPISSIIAPTPKDHNEVLHNSIPVTTNSKNPNSTNVYPLDTGSHVVLQ 64
SSS P PT VS PPISSIIAPTPKD NEVLHNS+PV NS+N STNVYPLDT S+ +LQ
Sbjct: 6 SSSLP-PTTVSFPPISSIIAPTPKDDNEVLHNSVPVPHNSENQISTNVYPLDTSSNAILQ 65
Query: 65 DQDYPSSPMPTISLMGNYESSSSMVHSPIDALHAI 100
+ D P S MG YE+SSSM S +DALHAI
Sbjct: 66 EYDDPP------STMGIYETSSSMAPSLVDALHAI 93
BLAST of PI0023060 vs. ExPASy TrEMBL
Match:
A0A5A7VFQ6 (Retrotransposon protein, putative, Ty1-copia subclass OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold418G00150 PE=4 SV=1)
HSP 1 Score: 65.5 bits (158), Expect = 1.8e-07
Identity = 45/120 (37.50%), Postives = 66/120 (55.00%), Query Frame = 0
Query: 4 SSSSFPTPTNVSLPPISSIIAPTPKDHNEVLHNSIPVTTNSKNPNSTNVYPLDTGSHVVL 63
S SS P NV PP+ SII + +HNE ++ V+ N+ NST VYPL+TG+
Sbjct: 385 SHSSIPKSKNVLSPPLHSIIPSSLMNHNEDRRHTDTVSDNTDYLNSTIVYPLETGTQESS 444
Query: 64 QDQDYPSSPMPTISLMGNYESSSSMVHSPIDALHAINAHPMMTRGKCDIFKSKAYLVDYT 123
+D + S M + S +++ L + + HPM+T+ K DIFK KA+L+DYT
Sbjct: 445 RDDGNSGGITQSPSPMEPPHQTDSGMNT---QLQSTSIHPMITQSKHDIFKPKAFLIDYT 501
BLAST of PI0023060 vs. ExPASy TrEMBL
Match:
A0A5D3D5W0 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold204G001310 PE=4 SV=1)
HSP 1 Score: 63.5 bits (153), Expect = 6.9e-07
Identity = 44/120 (36.67%), Postives = 65/120 (54.17%), Query Frame = 0
Query: 4 SSSSFPTPTNVSLPPISSIIAPTPKDHNEVLHNSIPVTTNSKNPNSTNVYPLDTGSHVVL 63
S SS P NV PP+ SII + +HNE ++ V+ N+ N T VYPL+TG+
Sbjct: 123 SHSSIPKSKNVLSPPLHSIIPSSLMNHNEDRRHTDTVSDNTDYLNPTIVYPLETGTQESS 182
Query: 64 QDQDYPSSPMPTISLMGNYESSSSMVHSPIDALHAINAHPMMTRGKCDIFKSKAYLVDYT 123
+D + S M + S +++ L + + HPM+T+ K DIFK KA+L+DYT
Sbjct: 183 RDDGNSGGITQSPSPMEPPHQTDSGMNT---QLQSTSIHPMITQSKHDIFKPKAFLIDYT 239
BLAST of PI0023060 vs. ExPASy TrEMBL
Match:
A0A5D3DJG8 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold500G001450 PE=4 SV=1)
HSP 1 Score: 57.8 bits (138), Expect = 3.8e-05
Identity = 45/120 (37.50%), Postives = 61/120 (50.83%), Query Frame = 0
Query: 4 SSSSFPTPTNVSLPPISSIIAPTPKDHNEVLHNSIPVTTNSKNPNSTNVYPLDTGSHVVL 63
S S +P+ V PP SI+ P +HN V H P T N+ N+ +YPL+TG
Sbjct: 123 SHSITSSPSTVFNPPFQSILHTPPLNHNAVRHEIEPFTDNA--DNTAIMYPLETGISAQT 182
Query: 64 QDQDYPSSPMPTISLMGNYESSSSMVHSPIDALHAINAHPMMTRGKCDIFKSKAYLVDYT 123
+++ S TI L +++ SP L N HPM+TR K IFK KA L+DYT
Sbjct: 183 REES-TSEGCDTIPLQTEEPVNNA---SPASTL---NTHPMVTRSKNGIFKPKALLIDYT 233
BLAST of PI0023060 vs. NCBI nr
Match:
KAA0032169.1 (putative mitochondrial protein [Cucumis melo var. makuwa] >TYK14414.1 putative mitochondrial protein [Cucumis melo var. makuwa])
HSP 1 Score: 114.0 bits (284), Expect = 9.2e-22
Identity = 67/95 (70.53%), Postives = 73/95 (76.84%), Query Frame = 0
Query: 1 MSTSSSSFPTPTNVSLPPISSIIAPTPKDHNEVLHNSIPVTTNSKNPNSTNVYPLDTGSH 60
M+T SSS TPT VSLPPISSIIAPTPKDHNEVL NSI + NSKNPNSTNVYPLDTGS+
Sbjct: 1 MNTPSSSSITPTIVSLPPISSIIAPTPKDHNEVLPNSILIPNNSKNPNSTNVYPLDTGSN 60
Query: 61 VVLQDQDYPSSPMPTISLMGNYESSSSMVHSPIDA 96
VLQD D P S MGNY++SSSM S ID+
Sbjct: 61 EVLQDHDDPP------STMGNYKTSSSMASSLIDS 89
BLAST of PI0023060 vs. NCBI nr
Match:
KGN54718.1 (hypothetical protein Csa_012961 [Cucumis sativus])
HSP 1 Score: 107.1 bits (266), Expect = 1.1e-19
Identity = 63/95 (66.32%), Postives = 70/95 (73.68%), Query Frame = 0
Query: 5 SSSFPTPTNVSLPPISSIIAPTPKDHNEVLHNSIPVTTNSKNPNSTNVYPLDTGSHVVLQ 64
SSS P PT VS PPISSIIAPTPKD NEVLHNS+PV NS+N STNVYPLDT S+ +LQ
Sbjct: 6 SSSLP-PTTVSFPPISSIIAPTPKDDNEVLHNSVPVPHNSENQISTNVYPLDTSSNAILQ 65
Query: 65 DQDYPSSPMPTISLMGNYESSSSMVHSPIDALHAI 100
+ D P S MG YE+SSSM S +DALHAI
Sbjct: 66 EYDDPP------STMGIYETSSSMAPSLVDALHAI 93
BLAST of PI0023060 vs. NCBI nr
Match:
KAA0067212.1 (retrotransposon protein, putative, Ty1-copia subclass [Cucumis melo var. makuwa])
HSP 1 Score: 65.5 bits (158), Expect = 3.7e-07
Identity = 45/120 (37.50%), Postives = 66/120 (55.00%), Query Frame = 0
Query: 4 SSSSFPTPTNVSLPPISSIIAPTPKDHNEVLHNSIPVTTNSKNPNSTNVYPLDTGSHVVL 63
S SS P NV PP+ SII + +HNE ++ V+ N+ NST VYPL+TG+
Sbjct: 385 SHSSIPKSKNVLSPPLHSIIPSSLMNHNEDRRHTDTVSDNTDYLNSTIVYPLETGTQESS 444
Query: 64 QDQDYPSSPMPTISLMGNYESSSSMVHSPIDALHAINAHPMMTRGKCDIFKSKAYLVDYT 123
+D + S M + S +++ L + + HPM+T+ K DIFK KA+L+DYT
Sbjct: 445 RDDGNSGGITQSPSPMEPPHQTDSGMNT---QLQSTSIHPMITQSKHDIFKPKAFLIDYT 501
BLAST of PI0023060 vs. NCBI nr
Match:
TYK18915.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])
HSP 1 Score: 63.5 bits (153), Expect = 1.4e-06
Identity = 44/120 (36.67%), Postives = 65/120 (54.17%), Query Frame = 0
Query: 4 SSSSFPTPTNVSLPPISSIIAPTPKDHNEVLHNSIPVTTNSKNPNSTNVYPLDTGSHVVL 63
S SS P NV PP+ SII + +HNE ++ V+ N+ N T VYPL+TG+
Sbjct: 123 SHSSIPKSKNVLSPPLHSIIPSSLMNHNEDRRHTDTVSDNTDYLNPTIVYPLETGTQESS 182
Query: 64 QDQDYPSSPMPTISLMGNYESSSSMVHSPIDALHAINAHPMMTRGKCDIFKSKAYLVDYT 123
+D + S M + S +++ L + + HPM+T+ K DIFK KA+L+DYT
Sbjct: 183 RDDGNSGGITQSPSPMEPPHQTDSGMNT---QLQSTSIHPMITQSKHDIFKPKAFLIDYT 239
BLAST of PI0023060 vs. NCBI nr
Match:
KAA0045110.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa] >TYK23628.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])
HSP 1 Score: 57.8 bits (138), Expect = 7.8e-05
Identity = 45/120 (37.50%), Postives = 61/120 (50.83%), Query Frame = 0
Query: 4 SSSSFPTPTNVSLPPISSIIAPTPKDHNEVLHNSIPVTTNSKNPNSTNVYPLDTGSHVVL 63
S S +P+ V PP SI+ P +HN V H P T N+ N+ +YPL+TG
Sbjct: 123 SHSITSSPSTVFNPPFQSILHTPPLNHNAVRHEIEPFTDNA--DNTAIMYPLETGISAQT 182
Query: 64 QDQDYPSSPMPTISLMGNYESSSSMVHSPIDALHAINAHPMMTRGKCDIFKSKAYLVDYT 123
+++ S TI L +++ SP L N HPM+TR K IFK KA L+DYT
Sbjct: 183 REES-TSEGCDTIPLQTEEPVNNA---SPASTL---NTHPMVTRSKNGIFKPKALLIDYT 233
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A5D3CTU1 | 4.4e-22 | 70.53 | Putative mitochondrial protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_s... | [more] |
A0A0A0KYW3 | 5.4e-20 | 66.32 | Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G432470 PE=4 SV=1 | [more] |
A0A5A7VFQ6 | 1.8e-07 | 37.50 | Retrotransposon protein, putative, Ty1-copia subclass OS=Cucumis melo var. makuw... | [more] |
A0A5D3D5W0 | 6.9e-07 | 36.67 | Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var.... | [more] |
A0A5D3DJG8 | 3.8e-05 | 37.50 | Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var.... | [more] |
Match Name | E-value | Identity | Description | |
KAA0032169.1 | 9.2e-22 | 70.53 | putative mitochondrial protein [Cucumis melo var. makuwa] >TYK14414.1 putative m... | [more] |
KGN54718.1 | 1.1e-19 | 66.32 | hypothetical protein Csa_012961 [Cucumis sativus] | [more] |
KAA0067212.1 | 3.7e-07 | 37.50 | retrotransposon protein, putative, Ty1-copia subclass [Cucumis melo var. makuwa] | [more] |
TYK18915.1 | 1.4e-06 | 36.67 | Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m... | [more] |
KAA0045110.1 | 7.8e-05 | 37.50 | Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m... | [more] |
Match Name | E-value | Identity | Description | |