PI0022035 (gene) Melon (PI 482460) v1

Overview
NamePI0022035
Typegene
OrganismCucumis metuliferus (Melon (PI 482460) v1)
DescriptionL10-interacting MYB domain-containing protein-like
Locationchr09: 11783662 .. 11786151 (-)
RNA-Seq ExpressionPI0022035
SyntenyPI0022035
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CTCCTCCTTCCATCTTTCTCCCTAACCGAAAACTTTTGTGCTCACTCTTTCTCATTTTGTCTGTCAAACCCTCCTTTTGTTCTTCCTCTAAAGCAAAAGCTAGATTGGGATTTTCCTGTTGTGATAAATGAACATGATAGCTTCTTACGAAAAGACAATTGTACCAAATGGTTGGGTTTCTAATTAGGTTCTGTGTTGAAGACCTTATTTGTAAAGCTCTCCAAAAAGTGGCTATAACACTCTCTTTACTCAATTTTTTGAGGTTAGAAAGAACTGAAGGGGTTATCAAGTGGATTCTTTACAAGGTATGTTTGGCCCATTGTTATTCAAGATATTTTGTTTTTGTTTCTGATTAGTTTTTTATTTGGATTTTTATTATTAGTTTTTTATTTGGATTTTTATTTTTTATTAGCTTTTTTATTTGGCCTTTTGTTTCTGATTAGTTTTTTATTTGGGTTTGTGAAAATTTGTGTGAGAGGAGGGAAAATTTGTGAAAATTTGTGATCAGCTTAGACCGAACAGACTTAAACCATATTTTGCTATTTTTTTATATATAGGAAACAATATTTAGCTAGTCTTTAATCCATTCGAATGTTGTTTCTTCTCATCTGATGGAAAGTCGTGTTTTTCTTAGATAAATGATGGTGGGTTGGCTGTAATCTTAATTAGGAGTTCTGTAATTTCATTAAAAGATTATTTTTAACTCTGTCATTTGAAATCTAAACAAGATTGTTTACTTGATGGTTTTTTAGATACACAAATATATGAATTATGAGGAGCAACTTATTAAATATAATACATCAAGTATATGCGTGAATATATTGAGAAAGTAAAGATCCCACAGGATAGTATAATAAAGAGGTCTTTTTCTCTCACTCTTGGTAAGAAAGTTATCAAGAAAAGTTAAAGTTAAAAGAGGACTTTTCTTTCTGTTGAGTTATTTGAAATAATAGGTTTCTTTTGTTTGATTAGGTAAGTGTGAGATTGAGTGTGAATAGGTTTCTTGGAGCTAATAAACTCCAACAACATTCGCCCTTAAGCTACACTTCCATGACTCCATCATCTTCATGAACGAGCCATTTTTCAAGGATTTGGGTTTTTGTTTGTAATTAGTTTTTTATTTGCGTTTTTGTTTCTAATCTTACTACAAATTAGTTTCTGATCTCCTCTTTTCGTTTCTACGACACTATTCATTTGGGTTTTTTTCTAGATTTCATTTTTGAAGTGTTTTTGTTTTTGTTGTCATCGTTTGTGAGTTGAGAAAATTGGTGAAAAATTGAGGTATTTTGGTTATGAACCCACATATATAGTTTTTCGTTGTTTTGACTAATATGTGTTGCTTGTTAGACTGAATCTTCTTCTTCTTACTTTTAGAAATATGGATGCTAAACAAATTCCTCTACTTTGTTTCTTGATTTTGATTGTGTCCTGTAGTTTCGATTTTACATATGTAGTTCTATATTGAAGTTCTAGAAAAATTCGTTACTTAACCCACCTTTTTGTTTCAGTAGATGTCCATAAATATAACTACAAATAGAGATGAAAAGGAAAAACAATTCAAGGAAATTTGGGATGATACTACAACTGATGCATTTATCCATGCTTATGTTGATGAAATTTTGAAAGGGAATAGGCCAAATGGACATTTAAGTAAGATGGATGGAAAAATATTATTAGAATATTTAGAGAGATAATCAGAAGAAATTATGATCAAAGACAAATGAAAAATAAATGGGCTGTGTTAAAAAAAGATTGACAGATATGGATAGACTTGGTTGGAAACAACACAAGCTTGGGTTGGGATTCATTGAGACAAACTATTGATGCACCAAATGAGTGGTGAGAAGAGAATTTAAAGGTATATCATTTATCTATATAGTTTATTTATTAGGAATGAAAATTATAATTAAATACTTCTTAAATCAATATCTTGTAGGTTAAGCCCGAGGCAACAAAATTTCGAGCAAAAGGGTTGCAAAATGTAGACCAATTAGATATTTTTTTAAAGATATTGCAGTTACATGAGAAGAAGCATGGGCACCATCTCAAGGATTTGTACCTCAAAGTACTGAAGGCAATTCATCTAGACATGTAGGAGAAAATGATGATACATTTGAAGATACGGAGCATAATGATACTAATGATACAAAATATTCAATACATACTGTTAGGGATTACACTTAAGGGAAAGGAAAAAAAAAAAAAGAAAAAGAATAGGATCAAAAGGTAATGTTGCCAATAAACTTTGTAATCAGGTTGGAACATGTGTGTGGATCAATAGATAATAGGAGAAAAGATTTTCCAGGTTGCAATATTTTTTAAGTGATGAATGTCTTACGAGACATACTTGGAATTGTAAAAGGCGATGAGCTTTTAATGAAAGTTGCAGATATCTTTACAAAATAGAAAAATAGATAAATGCTCGTAGCGCTACAAGAGCCTGAGATTCAAGTTGCATGATTTAAGCAAAAGAAAGTTTGATGACCTTAG

mRNA sequence

CTCCTCCTTCCATCTTTCTCCCTAACCGAAAACTTTTGTGCTCACTCTTTCTCATTTTGTCTGTCAAACCCTCCTTTTGTTCTTCCTCTAAAGCAAAAGCTAGATTGGGATTTTCCTGTTGTGATAAATGAACATGATAGCTTCTTACGAAAAGACAATTGTACCAAATGGTTGGGTTTCTAATTAGGTTCTGTGTTGAAGACCTTATTTGTAAAGCTCTCCAAAAAGTGGCTATAACACTCTCTTTACTCAATTTTTTGAGGTTAGAAAGAACTGAAGGGGTTATCAAGTGGATTCTTTACAAGATGTCCATAAATATAACTACAAATAGAGATGAAAAGGAAAAACAATTCAAGGAAATTTGGGATGATACTACAACTGATGCATTTATCCATGCTTATGTTGATGAAATTTTGAAAGGGAATAGGCCAAATGGACATTTAAGTAAGATGGATGGAAAAATATTATTAGAATATTTAGAGAGATAATCAGAAGAAATTATGATCAAAGACAAATGAAAAATAAATGGGCTGTGTTAAAAAAAGATTGACAGATATGGATAGACTTGGTTGGAAACAACACAAGCTTGGGTTGGGATTCATTGAGACAAACTATTGATGCACCAAATGAGTGGTGAGAAGAGAATTTAAAGGTTAAGCCCGAGGCAACAAAATTTCGAGCAAAAGGGTTGCAAAATGTAGACCAATTAGATATTTTTTTAAAGATATTGCAGTTACATGAGAAGAAGCATGGGCACCATCTCAAGGATTTGTACCTCAAAGTACTGAAGGCAATTCATCTAGACATGTAGGAGAAAATGATGATACATTTGAAGATACGGAGCATAATGATACTAATGATACAAAATATTCAATACATACTGTTAGGGATTACACTTAAGGGAAAGGAAAAAAAAAAAAAGAAAAAGAATAGGATCAAAAGGTAATGTTGCCAATAAACTTTGTAATCAGGTTGGAACATGTGTGTGGATCAATAGATAATAGGAGAAAAGATTTTCCAGGTTGCAATATTTTTTAAGTGATGAATGTCTTACGAGACATACTTGGAATTGTAAAAGGCGATGAGCTTTTAATGAAAGTTGCAGATATCTTTACAAAATAGAAAAATAGATAAATGCTCGTAGCGCTACAAGAGCCTGAGATTCAAGTTGCATGATTTAAGCAAAAGAAAGTTTGATGACCTTAG

Coding sequence (CDS)

ATGGTTGGGTTTCTAATTAGGTTCTGTGTTGAAGACCTTATTTGTAAAGCTCTCCAAAAAGTGGCTATAACACTCTCTTTACTCAATTTTTTGAGGTTAGAAAGAACTGAAGGGGTTATCAAGTGGATTCTTTACAAGATGTCCATAAATATAACTACAAATAGAGATGAAAAGGAAAAACAATTCAAGGAAATTTGGGATGATACTACAACTGATGCATTTATCCATGCTTATGTTGATGAAATTTTGAAAGGGAATAGGCCAAATGGACATTTAAGTAAGATGGATGGAAAAATATTATTAGAATATTTAGAGAGATAA

Protein sequence

MVGFLIRFCVEDLICKALQKVAITLSLLNFLRLERTEGVIKWILYKMSINITTNRDEKEKQFKEIWDDTTTDAFIHAYVDEILKGNRPNGHLSKMDGKILLEYLER
Homology
[Close]
BLAST of PI0022035 vs. ExPASy TrEMBL
Match: A0A6J1DZU8 (L10-interacting MYB domain-containing protein-like OS=Momordica charantia OX=3673 GN=LOC111026126 PE=4 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 1.7e-06
Identity = 29/49 (59.18%), Postives = 35/49 (71.43%), Query Frame = 0 

Query: 47 MSINITTNRDEKEKQFKEIWDDTTTDAFIHAYVDEILKGNRPNGHLSKM 96
          MS +I T+ DE+E+Q K IWDD T D+FIH  V E L GNRP GH SK+
Sbjct: 1  MSRSIATS-DERERQIKAIWDDVTLDSFIHVCVGETLNGNRPRGHFSKI 48

[Close]
BLAST of PI0022035 vs. ExPASy TrEMBL
Match: A0A6J1EN01 (L10-interacting MYB domain-containing protein-like OS=Cucurbita moschata OX=3662 GN=LOC111435828 PE=4 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 7.3e-05
Identity = 23/40 (57.50%), Postives = 30/40 (75.00%), Query Frame = 0 

Query: 56 DEKEKQFKEIWDDTTTDAFIHAYVDEILKGNRPNGHLSKM 96
          DEKE+Q K IWDD T D+FI+  + E L GNRP+GH +K+
Sbjct: 9  DEKERQTKAIWDDVTVDSFINVCITETLNGNRPHGHFTKI 48

[Close]
BLAST of PI0022035 vs. ExPASy TrEMBL
Match: A5AXN9 (DDE Tnp4 domain-containing protein OS=Vitis vinifera OX=29760 GN=VITISV_023669 PE=3 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 2.8e-04
Identity = 29/65 (44.62%), Postives = 36/65 (55.38%), Query Frame = 0 

Query: 39  VIKWILYKMSINIT-----TNRDEKEKQFKEIWDDTTTDAFIHAYVDEILKGNRPNGHLS 98
           ++  + Y+MS NI       +  E EKQ K  WDD T DAFI   V E L GNRPN H +
Sbjct: 61  ILTSVPYRMSSNIVQPFQQPSGGESEKQSKAYWDDITMDAFIKVCVTETLAGNRPNSHFN 120

[Close]
BLAST of PI0022035 vs. ExPASy TrEMBL
Match: A0A0A0KKV6 (Myb_DNA-bind_3 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G167170 PE=4 SV=1)

HSP 1 Score: 53.9 bits (128), Expect = 4.7e-04
Identity = 23/43 (53.49%), Postives = 30/43 (69.77%), Query Frame = 0 

Query: 53 TNRDEKEKQFKEIWDDTTTDAFIHAYVDEILKGNRPNGHLSKM 96
          T  DEKE+Q K IWDD T D+FI+  V E L G+RP G+ +K+
Sbjct: 4  TTSDEKERQTKAIWDDVTVDSFINVCVTETLNGHRPRGYFTKI 46

[Close]
BLAST of PI0022035 vs. ExPASy TrEMBL
Match: A0A5A7UN70 (L10-interacting MYB domain-containing protein-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold231G00110 PE=4 SV=1)

HSP 1 Score: 53.1 bits (126), Expect = 8.0e-04
Identity = 25/48 (52.08%), Postives = 34/48 (70.83%), Query Frame = 0 

Query: 47 MSINITTNRDEKEKQFKEIWDDTTTDAFIHAYVDEILKGNRPNGHLSK 95
          MS ++ T+ DEKE+Q K IWDD T D+FI+  V E L G+RP G+ +K
Sbjct: 1  MSKSLATS-DEKERQTKAIWDDVTVDSFINVCVTETLNGHRPRGYFTK 47

[Close]
BLAST of PI0022035 vs. NCBI nr
Match: XP_022159819.1 (L10-interacting MYB domain-containing protein-like [Momordica charantia] >XP_022159820.1 L10-interacting MYB domain-containing protein-like [Momordica charantia])

HSP 1 Score: 62.0 bits (149), Expect = 3.6e-06
Identity = 29/49 (59.18%), Postives = 35/49 (71.43%), Query Frame = 0 

Query: 47 MSINITTNRDEKEKQFKEIWDDTTTDAFIHAYVDEILKGNRPNGHLSKM 96
          MS +I T+ DE+E+Q K IWDD T D+FIH  V E L GNRP GH SK+
Sbjct: 1  MSRSIATS-DERERQIKAIWDDVTLDSFIHVCVGETLNGNRPRGHFSKI 48

[Close]
BLAST of PI0022035 vs. NCBI nr
Match: KAG6579636.1 (L10-interacting MYB domain-containing protein, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 56.6 bits (135), Expect = 1.5e-04
Identity = 23/40 (57.50%), Postives = 30/40 (75.00%), Query Frame = 0 

Query: 56 DEKEKQFKEIWDDTTTDAFIHAYVDEILKGNRPNGHLSKM 96
          DEKE+Q K IWDD T D+FI+  + E L GNRP+GH +K+
Sbjct: 9  DEKERQTKAIWDDVTVDSFINVCITETLNGNRPHGHFTKI 48

[Close]
BLAST of PI0022035 vs. NCBI nr
Match: KAG7017091.1 (L10-interacting MYB domain-containing protein, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 56.6 bits (135), Expect = 1.5e-04
Identity = 23/40 (57.50%), Postives = 30/40 (75.00%), Query Frame = 0 

Query: 56 DEKEKQFKEIWDDTTTDAFIHAYVDEILKGNRPNGHLSKM 96
          DEKE+Q K IWDD T D+FI+  + E L GNRP+GH +K+
Sbjct: 9  DEKERQTKAIWDDVTVDSFINVCITETLNGNRPHGHFTKI 48

[Close]
BLAST of PI0022035 vs. NCBI nr
Match: XP_022929169.1 (L10-interacting MYB domain-containing protein-like [Cucurbita moschata] >XP_022929170.1 L10-interacting MYB domain-containing protein-like [Cucurbita moschata])

HSP 1 Score: 56.6 bits (135), Expect = 1.5e-04
Identity = 23/40 (57.50%), Postives = 30/40 (75.00%), Query Frame = 0 

Query: 56 DEKEKQFKEIWDDTTTDAFIHAYVDEILKGNRPNGHLSKM 96
          DEKE+Q K IWDD T D+FI+  + E L GNRP+GH +K+
Sbjct: 9  DEKERQTKAIWDDVTVDSFINVCITETLNGNRPHGHFTKI 48

[Close]
BLAST of PI0022035 vs. NCBI nr
Match: CAN78441.1 (hypothetical protein VITISV_023669 [Vitis vinifera])

HSP 1 Score: 54.7 bits (130), Expect = 5.7e-04
Identity = 29/65 (44.62%), Postives = 36/65 (55.38%), Query Frame = 0 

Query: 39  VIKWILYKMSINIT-----TNRDEKEKQFKEIWDDTTTDAFIHAYVDEILKGNRPNGHLS 98
           ++  + Y+MS NI       +  E EKQ K  WDD T DAFI   V E L GNRPN H +
Sbjct: 61  ILTSVPYRMSSNIVQPFQQPSGGESEKQSKAYWDDITMDAFIKVCVTETLAGNRPNSHFN 120

The following BLAST results are available for this feature:
BLAST of PI0022035 vs.
Match NameE-valueIdentityDescription
BLAST of PI0022035 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1DZU81.7e-0659.18L10-interacting MYB domain-containing protein-like OS=Momordica charantia OX=367... [more]
A0A6J1EN017.3e-0557.50L10-interacting MYB domain-containing protein-like OS=Cucurbita moschata OX=3662... [more]
A5AXN92.8e-0444.62DDE Tnp4 domain-containing protein OS=Vitis vinifera OX=29760 GN=VITISV_023669 P... [more]
A0A0A0KKV64.7e-0453.49Myb_DNA-bind_3 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G167... [more]
A0A5A7UN708.0e-0452.08L10-interacting MYB domain-containing protein-like OS=Cucumis melo var. makuwa O... [more]
BLAST of PI0022035 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022159819.13.6e-0659.18L10-interacting MYB domain-containing protein-like [Momordica charantia] >XP_022... [more]
KAG6579636.11.5e-0457.50L10-interacting MYB domain-containing protein, partial [Cucurbita argyrosperma s... [more]
KAG7017091.11.5e-0457.50L10-interacting MYB domain-containing protein, partial [Cucurbita argyrosperma s... [more]
XP_022929169.11.5e-0457.50L10-interacting MYB domain-containing protein-like [Cucurbita moschata] >XP_0229... [more]
CAN78441.15.7e-0444.62hypothetical protein VITISV_023669 [Vitis vinifera][more]
BLAST of PI0022035 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
PI0022035.1PI0022035.1mRNA