PI0021716 (gene) Melon (PI 482460) v1

Overview


Name	PI0021716
Type	gene
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	40S ribosomal protein S13-like
Location	chr05: 11661599 .. 11662028 (+)
RNA-Seq Expression	PI0021716
Synteny	PI0021716

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGTTGTGAAAGTGGAGGAGTACCTGAAGATGAAAAGATTGGAAGTTCCAAAATAGTAAAAGAGAAGAAAAACCCGATTAAAGAAGAAGAAGGACCACTAAAGAGAGCGATGAGCAAAGCATTTACCAAAATTTCTTGTCATTCAAAATCGTCTGTTGGAAGTATCTCACTAGGTGAACCGATAATAAGTGGGGATGATGTTAAGAGGATCGATGAAAAGGGTTTAGAGGTAAGTATGTTTGCTTTGGCTTTATAATTTTAACCTCTACGATTAATTGCGCATCACATTTTTTTTCGTTTCTTTTTTTAAGGAAAAACCATGCCACTTGGATATAGGATCGGTTGATTATATTGTTGCAGTAGGCACAATATTTGTTGATGATGGAGAATGCCCTATCATTGGAGAAGATGTGGGGCAATTCCAGTGA

mRNA sequence

ATGAGTTGTGAAAGTGGAGGAGTACCTGAAGATGAAAAGATTGGAAGTTCCAAAATAGTAAAAGAGAAGAAAAACCCGATTAAAGAAGAAGAAGGACCACTAAAGAGAGCGATGAGCAAAGCATTTACCAAAATTTCTTGTCATTCAAAATCGTCTGTTGGAAGTATCTCACTAGGTGAACCGATAATAAGTGGGGATGATGTTAAGAGGATCGATGAAAAGGGTTTAGAGGAAAAACCATGCCACTTGGATATAGGATCGGTTGATTATATTGTTGCAGTAGGCACAATATTTGTTGATGATGGAGAATGCCCTATCATTGGAGAAGATGTGGGGCAATTCCAGTGA

Coding sequence (CDS)

ATGAGTTGTGAAAGTGGAGGAGTACCTGAAGATGAAAAGATTGGAAGTTCCAAAATAGTAAAAGAGAAGAAAAACCCGATTAAAGAAGAAGAAGGACCACTAAAGAGAGCGATGAGCAAAGCATTTACCAAAATTTCTTGTCATTCAAAATCGTCTGTTGGAAGTATCTCACTAGGTGAACCGATAATAAGTGGGGATGATGTTAAGAGGATCGATGAAAAGGGTTTAGAGGAAAAACCATGCCACTTGGATATAGGATCGGTTGATTATATTGTTGCAGTAGGCACAATATTTGTTGATGATGGAGAATGCCCTATCATTGGAGAAGATGTGGGGCAATTCCAGTGA

Protein sequence

MSCESGGVPEDEKIGSSKIVKEKKNPIKEEEGPLKRAMSKAFTKISCHSKSSVGSISLGEPIISGDDVKRIDEKGLEEKPCHLDIGSVDYIVAVGTIFVDDGECPIIGEDVGQFQ

Homology

[Close]

BLAST of PI0021716 vs. ExPASy TrEMBL
Match: A0A5A7UKS1 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold181G001250 PE=4 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 3.0e-04
Identity = 34/94 (36.17%), Postives = 54/94 (57.45%), Query Frame = 0


Query: 12  EKIGSSKIVKEKKNPIKEEEGPLKRAMSKAFTKISCHSKSSVGSISLGEPIISGDDVKRI 71
           + +G  K++  +     +EE   +    K++ K S HS+SS+GSI++ +     D V   
Sbjct: 49  DALGKEKMITSEVEICHKEEDDTR---CKSYKKRSNHSRSSIGSINI-DLDADEDLVNTP 108

Query: 72  DEKGLEEKPCHLDIGSVDYIVAVGTIFVDDGECP 106
           + KG+E KPC L IGS++ IVAV T+  D+  CP
Sbjct: 109 NNKGVEGKPCQLSIGSINNIVAVATVVEDNIGCP 138

[Close]

BLAST of PI0021716 vs. ExPASy TrEMBL
Match: A0A5A7UQI2 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold181G001240 PE=4 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 3.0e-04
Identity = 34/94 (36.17%), Postives = 54/94 (57.45%), Query Frame = 0


Query: 12  EKIGSSKIVKEKKNPIKEEEGPLKRAMSKAFTKISCHSKSSVGSISLGEPIISGDDVKRI 71
           + +G  K++  +     +EE   +    K++ K S HS+SS+GSI++ +     D V   
Sbjct: 64  DALGKEKMITSEVEICHKEEDDTR---CKSYKKRSNHSRSSIGSINI-DLDADEDLVNTP 123

Query: 72  DEKGLEEKPCHLDIGSVDYIVAVGTIFVDDGECP 106
           + KG+E KPC L IGS++ IVAV T+  D+  CP
Sbjct: 124 NNKGVEGKPCQLSIGSINNIVAVATVVEDNIGCP 153

[Close]

BLAST of PI0021716 vs. ExPASy TrEMBL
Match: A0A5A7UVK8 (40S ribosomal protein S13-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold108G002270 PE=3 SV=1)

HSP 1 Score: 53.5 bits (127), Expect = 6.7e-04
Identity = 36/88 (40.91%), Postives = 50/88 (56.82%), Query Frame = 0


Query: 18  KIVKEKKNPIKEEEGPLKRAMSKAFTKISCHSKSSVGSISLGEPIISGDDVKRIDEKGLE 77
           K VK K+  I  +E     ++ K+  K S HS+SS+GSI++   +    D      KG+E
Sbjct: 141 KTVKGKEKMITPQEE--DDSICKSDKKRSNHSRSSIGSINIDLDV----DEDTPSNKGVE 200

Query: 78  EKPCHLDIGSVDYIVAVGTIFVDDGECP 106
           E PC L IGS++ IVAV TI  D+  CP
Sbjct: 201 ETPCQLSIGSINNIVAVATIVEDNIGCP 222

[Close]

BLAST of PI0021716 vs. NCBI nr
Match: KAA0055739.1 (uncharacterized protein E6C27_scaffold181G001240 [Cucumis melo var. makuwa])

HSP 1 Score: 54.7 bits (130), Expect = 6.2e-04
Identity = 34/94 (36.17%), Postives = 54/94 (57.45%), Query Frame = 0


Query: 12  EKIGSSKIVKEKKNPIKEEEGPLKRAMSKAFTKISCHSKSSVGSISLGEPIISGDDVKRI 71
           + +G  K++  +     +EE   +    K++ K S HS+SS+GSI++ +     D V   
Sbjct: 64  DALGKEKMITSEVEICHKEEDDTR---CKSYKKRSNHSRSSIGSINI-DLDADEDLVNTP 123

Query: 72  DEKGLEEKPCHLDIGSVDYIVAVGTIFVDDGECP 106
           + KG+E KPC L IGS++ IVAV T+  D+  CP
Sbjct: 124 NNKGVEGKPCQLSIGSINNIVAVATVVEDNIGCP 153

[Close]

BLAST of PI0021716 vs. NCBI nr
Match: KAA0055740.1 (uncharacterized protein E6C27_scaffold181G001250 [Cucumis melo var. makuwa])

HSP 1 Score: 54.7 bits (130), Expect = 6.2e-04
Identity = 34/94 (36.17%), Postives = 54/94 (57.45%), Query Frame = 0


Query: 12  EKIGSSKIVKEKKNPIKEEEGPLKRAMSKAFTKISCHSKSSVGSISLGEPIISGDDVKRI 71
           + +G  K++  +     +EE   +    K++ K S HS+SS+GSI++ +     D V   
Sbjct: 49  DALGKEKMITSEVEICHKEEDDTR---CKSYKKRSNHSRSSIGSINI-DLDADEDLVNTP 108

Query: 72  DEKGLEEKPCHLDIGSVDYIVAVGTIFVDDGECP 106
           + KG+E KPC L IGS++ IVAV T+  D+  CP
Sbjct: 109 NNKGVEGKPCQLSIGSINNIVAVATVVEDNIGCP 138

The following BLAST results are available for this feature:

BLAST of PI0021716 vs.


Match Name	E-value	Identity	Description

BLAST of PI0021716 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7UKS1	3.0e-04	36.17	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5A7UQI2	3.0e-04	36.17	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5A7UVK8	6.7e-04	40.91	40S ribosomal protein S13-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_s...	[more]

BLAST of PI0021716 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0055739.1	6.2e-04	36.17	uncharacterized protein E6C27_scaffold181G001240 [Cucumis melo var. makuwa]	[more]
KAA0055740.1	6.2e-04	36.17	uncharacterized protein E6C27_scaffold181G001250 [Cucumis melo var. makuwa]	[more]

BLAST of PI0021716 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 14..34
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..34

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
PI0021716.1	PI0021716.1	mRNA