PI0021544 (gene) Melon (PI 482460) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below.ATGGCCTCAATTGGTGCTCGTTCTGCTTTCCGGTCATTCTCCGGTTCGGCACGCCGTGCTGCTGCTCACATCGGTTCTCAACCCAAGCCCTCACCAACCTCTCCCTTTCGCATGGCAACTAACAAACCCCTCTCTCATCGTGCTTTCAGGTTCGTCGCTTAATGCTTTTGCATCCGTTTTAAGTGCGAAAAGTTTCTGAATCTATAGCGCTTTGAGTTTTTTTTGCTCTCCCCAAAAGTAGAACAACGAAAACAGTGTTCAATCTTCATCTTTATTTCTCTCTTCAGTGTTTTAGTTGTGAAACGTTTCAGTAAAATGAGGTAATCTATTTTTCTTGAAGGTGTGCGCCTGAGATGAGCTTCTGTTTGGAGTCAATGATGCCATTTCACTCTGTGTCGTCCTCCGCTTTGATGACTTCAATGCTCTCTATCTCGCGCCACAGCTGCGGTTGGCTCCCCGAAGGTGCATAACTGATAATTTAATTCTTTACTTTCTTGATCTCTTATGAGCTAGATCGAAAGAGAGAAGGACAATATGATGTATTTGTATAGTTTGGAATTTAGACCATATCCATAATTTCAGAATGAATTCTTCCGTGGACAAGAACGAGTTGATAATTTTCTGGAAGCTGATTTTCTATTAAGCTGATTTTCTATTTACATTTGTTTTCCGTTGGATGAATTTTAGTTTTATAATTATTTTCATGAATCAGGAAAAATCAAGTTTAAGTGGGAATAATGATCAACGATATTTTGAAATAGTGATATCTATATTTAGGTTTAGGGGTCACATTAGCTACAGTGATCTGATGTTTCTGGCGGATGAAATATCCATGCTTGTATTCTATGATTAAGGTAGTTAATGTGTTTTAATCATAAGAAGCTACACCATGAAAAGCCTTCTTTTGGCTTAATTTAAGTACTGATGTGTATAAATATGTCAGTAACTCATAAACTTTCGTAAGCATTTTATGTGTACATAAATTTGGATGTATTGCGCTAGTTTTGTGATCACTTCTTGAGCTTTTTTCTTCCGAATGACTATTTCTTGTTTCTCCACTCAATATAAAACTTGTAAACATAGAGATACCTGATCCAGTTCCATAATTTTCTTTATTTTTTGTTTTGAAAGGAGAAGTGGATCTGCTTCTAGGCTGTCTAACTAGTGGATTTTTTACTCTTGAATTAGGTAGCTAGCACACTTTATAGGCCCATTGATGTTCTTCTTGCCTTCTTGTTGCTCTGGTGAGTTGGTGCCTGTAAACTAATATAGGACTGATAAAATTGAATGAAATTGTATGATAACATGCATGTACAACAAACTCGATCATTTCCCCCTATTAGACAGGTTATTACATCAAGTAGAAACTCTTCAAACTAGGATGCAAACAAGCTTAACAGACAAGATTGATTCATTCTCTCTTTCCTCCACCCACCTCTCATTACCATTCATCGATCAGAGTTTAAGTCCTTTTGCTGAACTCGAGTGTTTTAAATGTTTTTGTTCTGTATGCTTAGAATGAGTCATTTATGCAAAAACCTTCCATTTCTGATTCAAATTGTTAATTGAAAAAGCACATTCCCCTTTTTTCAATGTAGGCAAAGACAAGACTAGATGAGATCGAGAAGCAGGAAGGAATGACTTGATTTGTTTATTTGAGTTTCCCCTTTTAAGTCCTAGCGATGCCACCCCCCTTGGCCCACCCCCATCAATAGGTTAAATGAGATGATTGTATTTGGAATGAAATAATAAACTATGATACTCTAATTTGTTCACTTCGTTTGTAGATGATTGTTTTAACATGTTGAAAGATTATATATTCAATTTTATTTTGCAACTATATTGGACTACAGACTACTAGATCGTTGTTGAATAAATTTGGCTTCTACATAGTTTAAATATTGTTTTGCAAAGTTTACTTTGTTAATCGAGTATTTGGGTCTGTTGATTTGTTGTTATCTTTTCATTTCCACTACTTCATAAAGATGGAAGTTGCAAATTCATATATTTCTCTGTCCATAAGTAGCATGGAAAGAAGTTTGAAGTCGTCGGATGAAAGTTGAAGTCTTCTTTTTGAATGATTCACTGAAACATCCTTTGTTTCCAACTAGAATGAGTGTTTTGTAGTTTCCATGAACCAAAATTAGGTCCTAAATTTCCATCTTTTAAGTTTAAACTTGGAAAATGTCAATCTACACATCTCTGTGATGAGCATGTTCATCACCTCCCAAATTGTTTCTTGTTTCGATTAAAATATCAAACTGACACACTGGTCACTTGTGTTCATCAGCATGCAATGATGATCTATGA ATGGCCTCAATTGGTGCTCGTTCTGCTTTCCGGTCATTCTCCGGTTCGGCACGCCGTGCTGCTGCTCACATCGGTTCTCAACCCAAGCCCTCACCAACCTCTCCCTTTCGCATGGCAACTAACAAACCCCTCTCTCATCGTGCTTTCAGGTGTGCGCCTGAGATGAGCTTCTGTTTGGAGTCAATGATGCCATTTCACTCTGTGTCGTCCTCCGCTTTGATGACTTCAATGCTCTCTATCTCGCGCCACAGCTGCGGTTGGCTCCCCGAAGCATGCAATGATGATCTATGA ATGGCCTCAATTGGTGCTCGTTCTGCTTTCCGGTCATTCTCCGGTTCGGCACGCCGTGCTGCTGCTCACATCGGTTCTCAACCCAAGCCCTCACCAACCTCTCCCTTTCGCATGGCAACTAACAAACCCCTCTCTCATCGTGCTTTCAGGTGTGCGCCTGAGATGAGCTTCTGTTTGGAGTCAATGATGCCATTTCACTCTGTGTCGTCCTCCGCTTTGATGACTTCAATGCTCTCTATCTCGCGCCACAGCTGCGGTTGGCTCCCCGAAGCATGCAATGATGATCTATGA MASIGARSAFRSFSGSARRAAAHIGSQPKPSPTSPFRMATNKPLSHRAFRCAPEMSFCLESMMPFHSVSSSALMTSMLSISRHSCGWLPEACNDDL Homology
BLAST of PI0021544 vs. ExPASy Swiss-Prot
Match: Q93ZJ3 (Protein NUCLEAR FUSION DEFECTIVE 6, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=NFD6 PE=3 SV=1) HSP 1 Score: 68.2 bits (165), Expect = 5.9e-11 Identity = 45/95 (47.37%), Postives = 59/95 (62.11%), Query Frame = 0
BLAST of PI0021544 vs. ExPASy TrEMBL
Match: A0A0A0LMP1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G408410 PE=4 SV=1) HSP 1 Score: 181.0 bits (458), Expect = 2.3e-42 Identity = 92/96 (95.83%), Postives = 93/96 (96.88%), Query Frame = 0
BLAST of PI0021544 vs. ExPASy TrEMBL
Match: A0A1S4E1L9 (protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like isoform X2 OS=Cucumis melo OX=3656 GN=LOC103496017 PE=4 SV=1) HSP 1 Score: 178.7 bits (452), Expect = 1.1e-41 Identity = 91/95 (95.79%), Postives = 91/95 (95.79%), Query Frame = 0
BLAST of PI0021544 vs. ExPASy TrEMBL
Match: A0A1S4E0U2 (protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC107991430 PE=4 SV=1) HSP 1 Score: 174.9 bits (442), Expect = 1.7e-40 Identity = 90/96 (93.75%), Postives = 90/96 (93.75%), Query Frame = 0
BLAST of PI0021544 vs. ExPASy TrEMBL
Match: A0A0A0LT36 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G408420 PE=4 SV=1) HSP 1 Score: 173.7 bits (439), Expect = 3.7e-40 Identity = 88/90 (97.78%), Postives = 89/90 (98.89%), Query Frame = 0
BLAST of PI0021544 vs. ExPASy TrEMBL
Match: A0A0A0LN06 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G408390 PE=4 SV=1) HSP 1 Score: 167.5 bits (423), Expect = 2.6e-38 Identity = 86/90 (95.56%), Postives = 87/90 (96.67%), Query Frame = 0
BLAST of PI0021544 vs. NCBI nr
Match: XP_011649973.1 (protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial isoform X1 [Cucumis sativus]) HSP 1 Score: 185.7 bits (470), Expect = 1.9e-43 Identity = 93/95 (97.89%), Postives = 94/95 (98.95%), Query Frame = 0
BLAST of PI0021544 vs. NCBI nr
Match: XP_011649975.1 (protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial isoform X1 [Cucumis sativus]) HSP 1 Score: 181.0 bits (458), Expect = 4.8e-42 Identity = 92/96 (95.83%), Postives = 93/96 (96.88%), Query Frame = 0
BLAST of PI0021544 vs. NCBI nr
Match: XP_016901880.1 (PREDICTED: protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like isoform X2 [Cucumis melo]) HSP 1 Score: 178.7 bits (452), Expect = 2.4e-41 Identity = 91/95 (95.79%), Postives = 91/95 (95.79%), Query Frame = 0
BLAST of PI0021544 vs. NCBI nr
Match: XP_038901105.1 (protein NUCLEAR FUSION DEFECTIVE 6, mitochondrial-like isoform X2 [Benincasa hispida]) HSP 1 Score: 175.6 bits (444), Expect = 2.0e-40 Identity = 89/96 (92.71%), Postives = 90/96 (93.75%), Query Frame = 0
BLAST of PI0021544 vs. NCBI nr
Match: XP_011649977.1 (protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial isoform X1 [Cucumis sativus]) HSP 1 Score: 175.3 bits (443), Expect = 2.6e-40 Identity = 90/95 (94.74%), Postives = 91/95 (95.79%), Query Frame = 0
BLAST of PI0021544 vs. TAIR 10
Match: AT1G28395.4 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G33847.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). ) HSP 1 Score: 79.0 bits (193), Expect = 2.4e-15 Identity = 43/94 (45.74%), Postives = 61/94 (64.89%), Query Frame = 0
BLAST of PI0021544 vs. TAIR 10
Match: AT1G28395.2 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G33847.2); Has 89 Blast hits to 89 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 89; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). ) HSP 1 Score: 69.3 bits (168), Expect = 1.9e-12 Identity = 39/92 (42.39%), Postives = 58/92 (63.04%), Query Frame = 0
BLAST of PI0021544 vs. TAIR 10
Match: AT1G28395.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G33847.2); Has 89 Blast hits to 89 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 89; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). ) HSP 1 Score: 69.3 bits (168), Expect = 1.9e-12 Identity = 39/92 (42.39%), Postives = 58/92 (63.04%), Query Frame = 0
BLAST of PI0021544 vs. TAIR 10
Match: AT1G28395.3 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G33847.2); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). ) HSP 1 Score: 69.3 bits (168), Expect = 1.9e-12 Identity = 39/92 (42.39%), Postives = 58/92 (63.04%), Query Frame = 0
BLAST of PI0021544 vs. TAIR 10
Match: AT1G28395.5 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G33847.1). ) HSP 1 Score: 68.2 bits (165), Expect = 4.2e-12 Identity = 39/86 (45.35%), Postives = 55/86 (63.95%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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