PI0021238 (gene) Melon (PI 482460) v1

Overview
NamePI0021238
Typegene
OrganismCucumis metuliferus (Melon (PI 482460) v1)
DescriptionRetrovirus-related Pol polyprotein from transposon TNT 1-94
Locationchr06: 16797205 .. 16797573 (-)
RNA-Seq ExpressionPI0021238
SyntenyPI0021238
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACTTCAAAAGTGGCTATTCAGTTGATAGGATTCACCAATGCCAAAGATCTGTGGGAAGCAATGCAGGATCTCTTTGGTGTTCAATCCAAAGCTAAAGAAGATTTTCTCCGCCAAACTTTTCAAACCACCAGAAAATGTAATACAAAAATGGAAGATTATTTGCGAACTATGCAAAATAATGTTGACAATCTTGGTCAAGCTGGTAGTCCAGTTCCTCTTCGTGCTCTTGTCTCACAGGTTTTGCTGGAATTAGATGAAACTTATAATCCAGTGATTGTTGTGCAAGGAAAGTCTGACATATCTTGGCTAGATATGCAATCTGAACTTCTTATCTCTGGAAAAAGGTTGGAACATCAAAATTATTAG

mRNA sequence

ATGACTTCAAAAGTGGCTATTCAGTTGATAGGATTCACCAATGCCAAAGATCTGTGGGAAGCAATGCAGGATCTCTTTGGTGTTCAATCCAAAGCTAAAGAAGATTTTCTCCGCCAAACTTTTCAAACCACCAGAAAATGTAATACAAAAATGGAAGATTATTTGCGAACTATGCAAAATAATGTTGACAATCTTGGTCAAGCTGGTAGTCCAGTTCCTCTTCGTGCTCTTGTCTCACAGGTTTTGCTGGAATTAGATGAAACTTATAATCCAGTGATTGTTGTGCAAGGAAAGTCTGACATATCTTGGCTAGATATGCAATCTGAACTTCTTATCTCTGGAAAAAGGTTGGAACATCAAAATTATTAG

Coding sequence (CDS)

ATGACTTCAAAAGTGGCTATTCAGTTGATAGGATTCACCAATGCCAAAGATCTGTGGGAAGCAATGCAGGATCTCTTTGGTGTTCAATCCAAAGCTAAAGAAGATTTTCTCCGCCAAACTTTTCAAACCACCAGAAAATGTAATACAAAAATGGAAGATTATTTGCGAACTATGCAAAATAATGTTGACAATCTTGGTCAAGCTGGTAGTCCAGTTCCTCTTCGTGCTCTTGTCTCACAGGTTTTGCTGGAATTAGATGAAACTTATAATCCAGTGATTGTTGTGCAAGGAAAGTCTGACATATCTTGGCTAGATATGCAATCTGAACTTCTTATCTCTGGAAAAAGGTTGGAACATCAAAATTATTAG

Protein sequence

MTSKVAIQLIGFTNAKDLWEAMQDLFGVQSKAKEDFLRQTFQTTRKCNTKMEDYLRTMQNNVDNLGQAGSPVPLRALVSQVLLELDETYNPVIVVQGKSDISWLDMQSELLISGKRLEHQNY
Homology
BLAST of PI0021238 vs. ExPASy TrEMBL
Match: A0A0A0LXB7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G496800 PE=4 SV=1)

HSP 1 Score: 180.3 bits (456), Expect = 5.0e-42
Identity = 90/122 (73.77%), Postives = 104/122 (85.25%), Query Frame = 0

Query: 1   MTSKVAIQLIGFTNAKDLWEAMQDLFGVQSKAKEDFLRQTFQTTRKCNTKMEDYLRTMQN 60
           +T +V +QLIGFTNAKD+WEA  D FGV+S+A+EDFLRQTFQTTRK N+ MEDYLR M+ 
Sbjct: 26  VTPEVVVQLIGFTNAKDMWEATHDFFGVRSRAEEDFLRQTFQTTRKGNSNMEDYLRIMKT 85

Query: 61  NVDNLGQAGSPVPLRALVSQVLLELDETYNPVIVV-QGKSDISWLDMQSELLISGKRLEH 120
           N DNLGQA SP+P RAL+SQVLL LDE YNPVIVV QGK +ISWLDMQS+LLI  KRL+H
Sbjct: 86  NADNLGQAESPIPRRALISQVLLGLDEVYNPVIVVIQGKPEISWLDMQSKLLIFEKRLKH 145

Query: 121 QN 122
           QN
Sbjct: 146 QN 147

BLAST of PI0021238 vs. ExPASy TrEMBL
Match: A0A5A7SIT7 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold19G00360 PE=4 SV=1)

HSP 1 Score: 174.9 bits (442), Expect = 2.1e-40
Identity = 91/122 (74.59%), Postives = 101/122 (82.79%), Query Frame = 0

Query: 1   MTSKVAIQLIGFTNAKDLWEAMQDLFGVQSKAKEDFLRQTFQTTRKCNTKMEDYLRTMQN 60
           MT  VAIQL+GFTN +DLW+A QD FGVQS+A+EDFLRQ  QTTRK NTKME+YL  M+ 
Sbjct: 123 MTPDVAIQLMGFTNVEDLWDATQDFFGVQSRAEEDFLRQMLQTTRKGNTKMEEYLLVMKT 182

Query: 61  NVDNLGQAGSPVPLRALVSQVLLELDETYNPVIVV-QGKSDISWLDMQSELLISGKRLEH 120
           NVDNLGQ GSPVP RAL+SQVLL LDE YN VIVV QGK DISWLDMQS+LLI  K L+H
Sbjct: 183 NVDNLGQVGSPVPRRALISQVLLGLDEVYNLVIVVIQGKPDISWLDMQSKLLIFEKILKH 242

Query: 121 QN 122
           QN
Sbjct: 243 QN 244

BLAST of PI0021238 vs. ExPASy TrEMBL
Match: A0A5D3C373 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold98G002430 PE=4 SV=1)

HSP 1 Score: 172.6 bits (436), Expect = 1.0e-39
Identity = 87/118 (73.73%), Postives = 97/118 (82.20%), Query Frame = 0

Query: 5   VAIQLIGFTNAKDLWEAMQDLFGVQSKAKEDFLRQTFQTTRKCNTKMEDYLRTMQNNVDN 64
           +AIQL+GFTNAKDLWEA QDLFGVQS+A+EDFLRQ FQTTRK     EDYLR M+ N D 
Sbjct: 45  IAIQLMGFTNAKDLWEATQDLFGVQSRAEEDFLRQMFQTTRKVRASYEDYLRIMKTNSDK 104

Query: 65  LGQAGSPVPLRALVSQVLLELDETYNPVI-VVQGKSDISWLDMQSELLISGKRLEHQN 122
           LGQAGSPVP RA +SQ LL LDE YNPVI V+QGK +ISW+DMQSELL   KRLEHQ+
Sbjct: 105 LGQAGSPVPKRAFISQALLGLDEVYNPVIAVIQGKPEISWIDMQSELLTFEKRLEHQD 162

BLAST of PI0021238 vs. ExPASy TrEMBL
Match: A0A5D3E3L7 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold216G001590 PE=4 SV=1)

HSP 1 Score: 159.8 bits (403), Expect = 7.0e-36
Identity = 82/113 (72.57%), Postives = 94/113 (83.19%), Query Frame = 0

Query: 1   MTSKVAIQLIGFTNAKDLWEAMQDLFGVQSKAKEDFLRQTFQTTRKCNTKMEDYLRTMQN 60
           M   VA+QL+GF  AKDLWEA+Q+LFG++S+A+E FLR TFQTTR+ N KMEDYLR M+ 
Sbjct: 87  MVPDVALQLMGFNTAKDLWEAIQNLFGIKSRAEEYFLRHTFQTTREGNYKMEDYLRIMKI 146

Query: 61  NVDNLGQAGSPVPLRALVSQVLLELDETYNPV-IVVQGKSDISWLDMQSELLI 113
           N DNLGQAGSPVP R L+SQVLL LDE YNPV  V+QGK DISWLDMQSELLI
Sbjct: 147 NADNLGQAGSPVPHRYLISQVLLGLDEVYNPVTAVIQGKPDISWLDMQSELLI 199

BLAST of PI0021238 vs. ExPASy TrEMBL
Match: A0A6J1D5J0 (uncharacterized protein LOC111017501 OS=Momordica charantia OX=3673 GN=LOC111017501 PE=4 SV=1)

HSP 1 Score: 144.8 bits (364), Expect = 2.3e-31
Identity = 73/124 (58.87%), Postives = 97/124 (78.23%), Query Frame = 0

Query: 1   MTSKVAIQLIGFTNAKDLWEAMQDLFGVQSKAKEDFLRQTFQTTRKCNTKMEDYLRTMQN 60
           MT +VA Q++G+ NA DLW A+Q+LFGVQS+A+ED+LRQ FQ TRK + KM D+LR M++
Sbjct: 53  MTPEVATQVMGYENACDLWAAIQELFGVQSQAEEDYLRQVFQQTRKGSLKMTDFLRVMKS 112

Query: 61  NVDNLGQAGSPVPLRALVSQVLLELDETYNPVI-VVQGKSDISWLDMQSEL--LISGKRL 120
           + DNLGQAGSPVP R+L+SQVLL LDE YNPV+  +QGK  ISW +MQ+E   +  G + 
Sbjct: 113 HADNLGQAGSPVPTRSLISQVLLGLDEEYNPVVATIQGKRGISWPEMQAEFRSVSGGNQR 172

Query: 121 EHQN 122
           ++QN
Sbjct: 173 QNQN 176

BLAST of PI0021238 vs. NCBI nr
Match: KGN65684.1 (hypothetical protein Csa_019689 [Cucumis sativus])

HSP 1 Score: 180.3 bits (456), Expect = 1.0e-41
Identity = 90/122 (73.77%), Postives = 104/122 (85.25%), Query Frame = 0

Query: 1   MTSKVAIQLIGFTNAKDLWEAMQDLFGVQSKAKEDFLRQTFQTTRKCNTKMEDYLRTMQN 60
           +T +V +QLIGFTNAKD+WEA  D FGV+S+A+EDFLRQTFQTTRK N+ MEDYLR M+ 
Sbjct: 26  VTPEVVVQLIGFTNAKDMWEATHDFFGVRSRAEEDFLRQTFQTTRKGNSNMEDYLRIMKT 85

Query: 61  NVDNLGQAGSPVPLRALVSQVLLELDETYNPVIVV-QGKSDISWLDMQSELLISGKRLEH 120
           N DNLGQA SP+P RAL+SQVLL LDE YNPVIVV QGK +ISWLDMQS+LLI  KRL+H
Sbjct: 86  NADNLGQAESPIPRRALISQVLLGLDEVYNPVIVVIQGKPEISWLDMQSKLLIFEKRLKH 145

Query: 121 QN 122
           QN
Sbjct: 146 QN 147

BLAST of PI0021238 vs. NCBI nr
Match: KAA0026100.1 (uncharacterized protein E6C27_scaffold19G00360 [Cucumis melo var. makuwa])

HSP 1 Score: 174.9 bits (442), Expect = 4.3e-40
Identity = 91/122 (74.59%), Postives = 101/122 (82.79%), Query Frame = 0

Query: 1   MTSKVAIQLIGFTNAKDLWEAMQDLFGVQSKAKEDFLRQTFQTTRKCNTKMEDYLRTMQN 60
           MT  VAIQL+GFTN +DLW+A QD FGVQS+A+EDFLRQ  QTTRK NTKME+YL  M+ 
Sbjct: 123 MTPDVAIQLMGFTNVEDLWDATQDFFGVQSRAEEDFLRQMLQTTRKGNTKMEEYLLVMKT 182

Query: 61  NVDNLGQAGSPVPLRALVSQVLLELDETYNPVIVV-QGKSDISWLDMQSELLISGKRLEH 120
           NVDNLGQ GSPVP RAL+SQVLL LDE YN VIVV QGK DISWLDMQS+LLI  K L+H
Sbjct: 183 NVDNLGQVGSPVPRRALISQVLLGLDEVYNLVIVVIQGKPDISWLDMQSKLLIFEKILKH 242

Query: 121 QN 122
           QN
Sbjct: 243 QN 244

BLAST of PI0021238 vs. NCBI nr
Match: TYK05754.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 172.6 bits (436), Expect = 2.2e-39
Identity = 87/118 (73.73%), Postives = 97/118 (82.20%), Query Frame = 0

Query: 5   VAIQLIGFTNAKDLWEAMQDLFGVQSKAKEDFLRQTFQTTRKCNTKMEDYLRTMQNNVDN 64
           +AIQL+GFTNAKDLWEA QDLFGVQS+A+EDFLRQ FQTTRK     EDYLR M+ N D 
Sbjct: 45  IAIQLMGFTNAKDLWEATQDLFGVQSRAEEDFLRQMFQTTRKVRASYEDYLRIMKTNSDK 104

Query: 65  LGQAGSPVPLRALVSQVLLELDETYNPVI-VVQGKSDISWLDMQSELLISGKRLEHQN 122
           LGQAGSPVP RA +SQ LL LDE YNPVI V+QGK +ISW+DMQSELL   KRLEHQ+
Sbjct: 105 LGQAGSPVPKRAFISQALLGLDEVYNPVIAVIQGKPEISWIDMQSELLTFEKRLEHQD 162

BLAST of PI0021238 vs. NCBI nr
Match: XP_038904321.1 (uncharacterized protein LOC120090675 [Benincasa hispida])

HSP 1 Score: 162.9 bits (411), Expect = 1.7e-36
Identity = 81/122 (66.39%), Postives = 101/122 (82.79%), Query Frame = 0

Query: 1   MTSKVAIQLIGFTNAKDLWEAMQDLFGVQSKAKEDFLRQTFQTTRKCNTKMEDYLRTMQN 60
           MT K+AIQ++GF  A+DLW  +Q LFG+QS+A+ED+LR  FQTTRK N KMEDYLRTM+ 
Sbjct: 64  MTPKIAIQVMGFECARDLWINIQQLFGIQSRAEEDYLRHVFQTTRKGNLKMEDYLRTMKM 123

Query: 61  NVDNLGQAGSPVPLRALVSQVLLELDETYNPVI-VVQGKSDISWLDMQSELLISGKRLEH 120
           NVDNL QAGSPVP RALV QVLL LDE YN ++  +QG++D+SWLDMQS+LL+  +RLEH
Sbjct: 124 NVDNLEQAGSPVPPRALVLQVLLGLDEEYNAIVATIQGRADMSWLDMQSKLLLYERRLEH 183

Query: 121 QN 122
           Q+
Sbjct: 184 QS 185

BLAST of PI0021238 vs. NCBI nr
Match: KAA0057475.1 (uncharacterized protein E6C27_scaffold280G003560 [Cucumis melo var. makuwa] >TYK30171.1 uncharacterized protein E5676_scaffold216G001590 [Cucumis melo var. makuwa])

HSP 1 Score: 159.8 bits (403), Expect = 1.4e-35
Identity = 82/113 (72.57%), Postives = 94/113 (83.19%), Query Frame = 0

Query: 1   MTSKVAIQLIGFTNAKDLWEAMQDLFGVQSKAKEDFLRQTFQTTRKCNTKMEDYLRTMQN 60
           M   VA+QL+GF  AKDLWEA+Q+LFG++S+A+E FLR TFQTTR+ N KMEDYLR M+ 
Sbjct: 87  MVPDVALQLMGFNTAKDLWEAIQNLFGIKSRAEEYFLRHTFQTTREGNYKMEDYLRIMKI 146

Query: 61  NVDNLGQAGSPVPLRALVSQVLLELDETYNPV-IVVQGKSDISWLDMQSELLI 113
           N DNLGQAGSPVP R L+SQVLL LDE YNPV  V+QGK DISWLDMQSELLI
Sbjct: 147 NADNLGQAGSPVPHRYLISQVLLGLDEVYNPVTAVIQGKPDISWLDMQSELLI 199

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0LXB75.0e-4273.77Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G496800 PE=4 SV=1[more]
A0A5A7SIT72.1e-4074.59Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A5D3C3731.0e-3973.73Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var.... [more]
A0A5D3E3L77.0e-3672.57Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A6J1D5J02.3e-3158.87uncharacterized protein LOC111017501 OS=Momordica charantia OX=3673 GN=LOC111017... [more]
Match NameE-valueIdentityDescription
KGN65684.11.0e-4173.77hypothetical protein Csa_019689 [Cucumis sativus][more]
KAA0026100.14.3e-4074.59uncharacterized protein E6C27_scaffold19G00360 [Cucumis melo var. makuwa][more]
TYK05754.12.2e-3973.73Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m... [more]
XP_038904321.11.7e-3666.39uncharacterized protein LOC120090675 [Benincasa hispida][more]
KAA0057475.11.4e-3572.57uncharacterized protein E6C27_scaffold280G003560 [Cucumis melo var. makuwa] >TYK... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePFAMPF14223Retrotran_gag_2coord: 8..115
e-value: 7.1E-10
score: 38.8

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
PI0021238.1PI0021238.1mRNA