PI0021170 (gene) Melon (PI 482460) v1

Overview
NamePI0021170
Typegene
OrganismCucumis metuliferus (Melon (PI 482460) v1)
DescriptionMediator of RNA polymerase II transcription subunit 12-like isoform X1
Locationchr04: 12657053 .. 12657262 (+)
RNA-Seq ExpressionPI0021170
SyntenyPI0021170
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGACACGGACGCAGCCACAGAGAACATAACGAATATATGTACTATGAAGCACCTACAGACGTATCAGATCCACAAGAGTACCAACAAGAACTATAAAACCAAGAGGAGCCATGGCAACATAGAGTTTAGAGTCGACGATGACAACCAACTCGAAATCGACGATGTGCAGGTTGTAGAACACATTGATTTTCTTTTATCTTTTAAATGA

mRNA sequence

ATGGACACGGACGCAGCCACAGAGAACATAACGAATATATGTACTATGAAGCACCTACAGACGTATCAGATCCACAAGAGTACCAACAAGAACTATAAAACCAAGAGGAGCCATGGCAACATAGAGTTTAGAGTCGACGATGACAACCAACTCGAAATCGACGATGTGCAGGTTGTAGAACACATTGATTTTCTTTTATCTTTTAAATGA

Coding sequence (CDS)

ATGGACACGGACGCAGCCACAGAGAACATAACGAATATATGTACTATGAAGCACCTACAGACGTATCAGATCCACAAGAGTACCAACAAGAACTATAAAACCAAGAGGAGCCATGGCAACATAGAGTTTAGAGTCGACGATGACAACCAACTCGAAATCGACGATGTGCAGGTTGTAGAACACATTGATTTTCTTTTATCTTTTAAATGA

Protein sequence

MDTDAATENITNICTMKHLQTYQIHKSTNKNYKTKRSHGNIEFRVDDDNQLEIDDVQVVEHIDFLLSFK
Homology
BLAST of PI0021170 vs. ExPASy TrEMBL
Match: A0A5D3C2V9 (Mediator of RNA polymerase II transcription subunit 12-like isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold98G001060 PE=4 SV=1)

HSP 1 Score: 99.0 bits (245), Expect = 8.3e-18
Identity = 51/67 (76.12%), Postives = 55/67 (82.09%), Query Frame = 0

Query: 1   MDTDAATENITNICTMKHLQTYQIHKSTNKNYKTKRSHGNIEFRVDDDNQLEIDDVQVVE 60
           MDTD A  NI NIC MKHLQ YQI KSTNKN +TKR+  NIE RVD +NQLEIDDV+VVE
Sbjct: 158 MDTDVAMGNIMNICIMKHLQMYQIDKSTNKNQRTKRTENNIELRVDVNNQLEIDDVRVVE 217

Query: 61  HIDFLLS 68
           HIDFLLS
Sbjct: 218 HIDFLLS 224

BLAST of PI0021170 vs. ExPASy TrEMBL
Match: A0A5A7TDY5 (Serine/threonine-protein phosphatase 7 long form-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold128G00990 PE=4 SV=1)

HSP 1 Score: 95.9 bits (237), Expect = 7.0e-17
Identity = 49/64 (76.56%), Postives = 54/64 (84.38%), Query Frame = 0

Query: 6   ATENITNICTMKHLQTYQIHKSTNKNYKTKRSHGNIEFRVDDDNQLEIDDVQVVEHIDFL 65
           A  NITNIC MKHLQ YQI KSTNKN +TKR+  NIEFRV+ DNQL+ID+VQVVEHIDFL
Sbjct: 352 ALGNITNICIMKHLQMYQIDKSTNKNQRTKRTENNIEFRVNVDNQLKIDEVQVVEHIDFL 411

Query: 66  LSFK 70
           LS K
Sbjct: 412 LSIK 415

BLAST of PI0021170 vs. ExPASy TrEMBL
Match: A0A5A7VF64 (Mediator of RNA polymerase II transcription subunit 12-like isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold384G00200 PE=4 SV=1)

HSP 1 Score: 84.0 bits (206), Expect = 2.8e-13
Identity = 43/56 (76.79%), Postives = 45/56 (80.36%), Query Frame = 0

Query: 1   MDTDAATENITNICTMKHLQTYQIHKSTNKNYKTKRSHGNIEFRVDDDNQLEIDDV 57
           MD D A  NITNIC MKHLQ YQI KSTNKN +TKR+  NIEFRVD DNQLEIDDV
Sbjct: 135 MDMDVAMGNITNICIMKHLQMYQIDKSTNKNQRTKRTENNIEFRVDVDNQLEIDDV 190

BLAST of PI0021170 vs. ExPASy TrEMBL
Match: A0A5A7TI03 (Stress-response A/B barrel domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold708G00480 PE=4 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 4.7e-05
Identity = 27/36 (75.00%), Postives = 31/36 (86.11%), Query Frame = 0

Query: 22 YQIHKSTNKNYKTKRSHGNIEFRVDDDNQLEIDDVQ 58
          YQI KSTNKN +TKR+  NIEF+VD DNQLEIDD+Q
Sbjct: 26 YQIDKSTNKNQRTKRTQNNIEFKVDIDNQLEIDDIQ 61

BLAST of PI0021170 vs. ExPASy TrEMBL
Match: A0A5D3CD18 (GATA zinc finger domain-containing protein 10-like isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1503G00530 PE=4 SV=1)

HSP 1 Score: 55.5 bits (132), Expect = 1.1e-04
Identity = 27/41 (65.85%), Postives = 30/41 (73.17%), Query Frame = 0

Query: 1   MDTDAATENITNICTMKHLQTYQIHKSTNKNYKTKRSHGNI 42
           MD D    NITNIC MKHLQ YQI KSTNKN +TKR+  +I
Sbjct: 106 MDMDVTMGNITNICIMKHLQMYQIDKSTNKNQRTKRTENHI 146

BLAST of PI0021170 vs. NCBI nr
Match: KAA0040602.1 (mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis melo var. makuwa] >TYK05644.1 mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 99.0 bits (245), Expect = 1.7e-17
Identity = 51/67 (76.12%), Postives = 55/67 (82.09%), Query Frame = 0

Query: 1   MDTDAATENITNICTMKHLQTYQIHKSTNKNYKTKRSHGNIEFRVDDDNQLEIDDVQVVE 60
           MDTD A  NI NIC MKHLQ YQI KSTNKN +TKR+  NIE RVD +NQLEIDDV+VVE
Sbjct: 158 MDTDVAMGNIMNICIMKHLQMYQIDKSTNKNQRTKRTENNIELRVDVNNQLEIDDVRVVE 217

Query: 61  HIDFLLS 68
           HIDFLLS
Sbjct: 218 HIDFLLS 224

BLAST of PI0021170 vs. NCBI nr
Match: KAA0041168.1 (serine/threonine-protein phosphatase 7 long form-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 95.9 bits (237), Expect = 1.5e-16
Identity = 49/64 (76.56%), Postives = 54/64 (84.38%), Query Frame = 0

Query: 6   ATENITNICTMKHLQTYQIHKSTNKNYKTKRSHGNIEFRVDDDNQLEIDDVQVVEHIDFL 65
           A  NITNIC MKHLQ YQI KSTNKN +TKR+  NIEFRV+ DNQL+ID+VQVVEHIDFL
Sbjct: 352 ALGNITNICIMKHLQMYQIDKSTNKNQRTKRTENNIEFRVNVDNQLKIDEVQVVEHIDFL 411

Query: 66  LSFK 70
           LS K
Sbjct: 412 LSIK 415

BLAST of PI0021170 vs. NCBI nr
Match: KAA0066693.1 (mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis melo var. makuwa] >TYK27843.1 mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 84.0 bits (206), Expect = 5.7e-13
Identity = 43/56 (76.79%), Postives = 45/56 (80.36%), Query Frame = 0

Query: 1   MDTDAATENITNICTMKHLQTYQIHKSTNKNYKTKRSHGNIEFRVDDDNQLEIDDV 57
           MD D A  NITNIC MKHLQ YQI KSTNKN +TKR+  NIEFRVD DNQLEIDDV
Sbjct: 135 MDMDVAMGNITNICIMKHLQMYQIDKSTNKNQRTKRTENNIEFRVDVDNQLEIDDV 190

BLAST of PI0021170 vs. NCBI nr
Match: KAA0040939.1 (stress-response A/B barrel domain-containing protein [Cucumis melo var. makuwa] >TYK20318.1 stress-response A/B barrel domain-containing protein [Cucumis melo var. makuwa])

HSP 1 Score: 56.6 bits (135), Expect = 9.8e-05
Identity = 27/36 (75.00%), Postives = 31/36 (86.11%), Query Frame = 0

Query: 22 YQIHKSTNKNYKTKRSHGNIEFRVDDDNQLEIDDVQ 58
          YQI KSTNKN +TKR+  NIEF+VD DNQLEIDD+Q
Sbjct: 26 YQIDKSTNKNQRTKRTQNNIEFKVDIDNQLEIDDIQ 61

BLAST of PI0021170 vs. NCBI nr
Match: TYK08229.1 (GATA zinc finger domain-containing protein 10-like isoform X2 [Cucumis melo var. makuwa])

HSP 1 Score: 55.5 bits (132), Expect = 2.2e-04
Identity = 27/41 (65.85%), Postives = 30/41 (73.17%), Query Frame = 0

Query: 1   MDTDAATENITNICTMKHLQTYQIHKSTNKNYKTKRSHGNI 42
           MD D    NITNIC MKHLQ YQI KSTNKN +TKR+  +I
Sbjct: 106 MDMDVTMGNITNICIMKHLQMYQIDKSTNKNQRTKRTENHI 146

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5D3C2V98.3e-1876.12Mediator of RNA polymerase II transcription subunit 12-like isoform X1 OS=Cucumi... [more]
A0A5A7TDY57.0e-1776.56Serine/threonine-protein phosphatase 7 long form-like protein OS=Cucumis melo va... [more]
A0A5A7VF642.8e-1376.79Mediator of RNA polymerase II transcription subunit 12-like isoform X1 OS=Cucumi... [more]
A0A5A7TI034.7e-0575.00Stress-response A/B barrel domain-containing protein OS=Cucumis melo var. makuwa... [more]
A0A5D3CD181.1e-0465.85GATA zinc finger domain-containing protein 10-like isoform X2 OS=Cucumis melo va... [more]
Match NameE-valueIdentityDescription
KAA0040602.11.7e-1776.12mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis ... [more]
KAA0041168.11.5e-1676.56serine/threonine-protein phosphatase 7 long form-like protein [Cucumis melo var.... [more]
KAA0066693.15.7e-1376.79mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis ... [more]
KAA0040939.19.8e-0575.00stress-response A/B barrel domain-containing protein [Cucumis melo var. makuwa] ... [more]
TYK08229.12.2e-0465.85GATA zinc finger domain-containing protein 10-like isoform X2 [Cucumis melo var.... [more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
PI0021170.1PI0021170.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0010073 meristem maintenance