PI0020809 (gene) Melon (PI 482460) v1

Overview
NamePI0020809
Typegene
OrganismCucumis metuliferus (Melon (PI 482460) v1)
DescriptionUnknown protein
Locationchr01: 13079701 .. 13080000 (-)
RNA-Seq ExpressionPI0020809
SyntenyPI0020809
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCTTTATTATAGTTATATCCACGCGGACTTGGAAACAAAAATAGATAACTACCATCAATCGCAGGAAGATCAGCTCGCATCTGAAATCGCGAGCCTTAAGGAGCAAAACAAGGCGATTGTGAGTCTGATCAAGAAGGCTTCCTTGCGGTCTGACAGACAATACAAGTCATTGATGAACTACATCCACGCGGCCATCACAAGCCTCGTGCCTAAGCCTGTCATTCCGCCTGAATTCGAAAATCCCCTTTCTAACAATGAAGTGGACGCCACGACAGGACCTTCCGAAACGCGGCTATAA

mRNA sequence

ATGCTTTATTATAGTTATATCCACGCGGACTTGGAAACAAAAATAGATAACTACCATCAATCGCAGGAAGATCAGCTCGCATCTGAAATCGCGAGCCTTAAGGAGCAAAACAAGGCGATTGTGAGTCTGATCAAGAAGGCTTCCTTGCGGTCTGACAGACAATACAAGTCATTGATGAACTACATCCACGCGGCCATCACAAGCCTCGTGCCTAAGCCTGTCATTCCGCCTGAATTCGAAAATCCCCTTTCTAACAATGAAGTGGACGCCACGACAGGACCTTCCGAAACGCGGCTATAA

Coding sequence (CDS)

ATGCTTTATTATAGTTATATCCACGCGGACTTGGAAACAAAAATAGATAACTACCATCAATCGCAGGAAGATCAGCTCGCATCTGAAATCGCGAGCCTTAAGGAGCAAAACAAGGCGATTGTGAGTCTGATCAAGAAGGCTTCCTTGCGGTCTGACAGACAATACAAGTCATTGATGAACTACATCCACGCGGCCATCACAAGCCTCGTGCCTAAGCCTGTCATTCCGCCTGAATTCGAAAATCCCCTTTCTAACAATGAAGTGGACGCCACGACAGGACCTTCCGAAACGCGGCTATAA

Protein sequence

MLYYSYIHADLETKIDNYHQSQEDQLASEIASLKEQNKAIVSLIKKASLRSDRQYKSLMNYIHAAITSLVPKPVIPPEFENPLSNNEVDATTGPSETRL
Homology
[Close]
BLAST of PI0020809 vs. ExPASy TrEMBL
Match: A0A5A7VKU1 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold2484G00210 PE=4 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 1.2e-06
Identity = 38/84 (45.24%), Postives = 52/84 (61.90%), Query Frame = 0 

Query: 24  DQLASEIASLKEQNKA-------IVSLIKKASLRSDRQYKSLMNYIHAAITSLVPKPVIP 83
           +++ S+IA LK QN+A       + + IK+ASL ++ Q ++LMNYIH  I SLVP P+ P
Sbjct: 130 EKIESDIAMLKTQNEAMQTQIQTMKTFIKQASLWTEMQCRTLMNYIHVTIVSLVPTPIFP 189

Query: 84  PEFENPLSNNEVD--ATTGPSETR 99
           PE E PL+  E    A   PSE R
Sbjct: 190 PELEEPLTEVEPGPCAAVEPSEPR 213

[Close]
BLAST of PI0020809 vs. NCBI nr
Match: KAA0067817.1 (hypothetical protein E6C27_scaffold2484G00210 [Cucumis melo var. makuwa])

HSP 1 Score: 62.4 bits (150), Expect = 2.6e-06
Identity = 38/84 (45.24%), Postives = 52/84 (61.90%), Query Frame = 0 

Query: 24  DQLASEIASLKEQNKA-------IVSLIKKASLRSDRQYKSLMNYIHAAITSLVPKPVIP 83
           +++ S+IA LK QN+A       + + IK+ASL ++ Q ++LMNYIH  I SLVP P+ P
Sbjct: 130 EKIESDIAMLKTQNEAMQTQIQTMKTFIKQASLWTEMQCRTLMNYIHVTIVSLVPTPIFP 189

Query: 84  PEFENPLSNNEVD--ATTGPSETR 99
           PE E PL+  E    A   PSE R
Sbjct: 190 PELEEPLTEVEPGPCAAVEPSEPR 213

The following BLAST results are available for this feature:
BLAST of PI0020809 vs.
Match NameE-valueIdentityDescription
BLAST of PI0020809 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7VKU11.2e-0645.24Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
BLAST of PI0020809 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0067817.12.6e-0645.24hypothetical protein E6C27_scaffold2484G00210 [Cucumis melo var. makuwa][more]
BLAST of PI0020809 vs. NCBI nr
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 84..99
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 78..99

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
PI0020809.1PI0020809.1mRNA