PI0020470 (gene) Melon (PI 482460) v1

Overview


Name	PI0020470
Type	gene
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	Retrotransposon protein
Location	chr11: 23136469 .. 23136795 (+)
RNA-Seq Expression	PI0020470
Synteny	PI0020470

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGAGTAAGCAAATGGAGGAATGTTTCAAGGGTACTGAGAAAGAAGTTCTGGGCCTTAAGGAGATGATGCTCGAACTAAAGAAAGTAGTGGAAAGAATGGCTGAGGATATGAGGGAAAATAGTTCGTACCGAAGAAGAGAAGAATCGGGCACTTCCAATAGTTCAGTGATGAAACTCAAAGGAAAAATGGAGGATCAGGAAACTCCAATGGACAACATGACGAGTACCATTGACAGGAGCAAGTATAAAAAGCTTGAAATGTCATTGTTCATGGGAAAAAACCTCGAATTGTGGGTCTACAGAGCGGAACATTTTTTGAAATAA

mRNA sequence

ATGGCGAGTAAGCAAATGGAGGAATGTTTCAAGGGTACTGAGAAAGAAGTTCTGGGCCTTAAGGAGATGATGCTCGAACTAAAGAAAGTAGTGGAAAGAATGGCTGAGGATATGAGGGAAAATAGTTCGTACCGAAGAAGAGAAGAATCGGGCACTTCCAATAGTTCAGTGATGAAACTCAAAGGAAAAATGGAGGATCAGGAAACTCCAATGGACAACATGACGAGTACCATTGACAGGAGCAAGTATAAAAAGCTTGAAATGTCATTGTTCATGGGAAAAAACCTCGAATTGTGGGTCTACAGAGCGGAACATTTTTTGAAATAA

Coding sequence (CDS)

ATGGCGAGTAAGCAAATGGAGGAATGTTTCAAGGGTACTGAGAAAGAAGTTCTGGGCCTTAAGGAGATGATGCTCGAACTAAAGAAAGTAGTGGAAAGAATGGCTGAGGATATGAGGGAAAATAGTTCGTACCGAAGAAGAGAAGAATCGGGCACTTCCAATAGTTCAGTGATGAAACTCAAAGGAAAAATGGAGGATCAGGAAACTCCAATGGACAACATGACGAGTACCATTGACAGGAGCAAGTATAAAAAGCTTGAAATGTCATTGTTCATGGGAAAAAACCTCGAATTGTGGGTCTACAGAGCGGAACATTTTTTGAAATAA

Protein sequence

MASKQMEECFKGTEKEVLGLKEMMLELKKVVERMAEDMRENSSYRRREESGTSNSSVMKLKGKMEDQETPMDNMTSTIDRSKYKKLEMSLFMGKNLELWVYRAEHFLK

Homology

[Close]

BLAST of PI0020470 vs. ExPASy TrEMBL
Match: A0A5D3E4T6 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold344G00470 PE=4 SV=1)

HSP 1 Score: 141.7 bits (356), Expect = 1.7e-30
Identity = 70/108 (64.81%), Postives = 90/108 (83.33%), Query Frame = 0


Query: 1   MASKQMEECFKGTEKEVLGLKEMMLELKKVVERMAEDMRENSSYRRREESGTSNSSVMKL 60
           MA +QMEE   GTEKE++GLKE+MLE+KK +ER+A++M+E+ SY++REESGTSN SVMKL
Sbjct: 1   MAQRQMEESVDGTEKEIMGLKEIMLEMKKAIERLADEMKESQSYKKREESGTSNGSVMKL 60

Query: 61  KGKMEDQETPMDNMTSTIDRSKYKKLEMSLFMGKNLELWVYRAEHFLK 109
           KGKME+ E   +   ++IDRSKYKKLEM +F+G+N E WVYRAEHF K
Sbjct: 61  KGKMEETELMTETNVASIDRSKYKKLEMPMFLGENPESWVYRAEHFFK 108

[Close]

BLAST of PI0020470 vs. ExPASy TrEMBL
Match: A0A5A7V689 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold178G00280 PE=4 SV=1)

HSP 1 Score: 137.9 bits (346), Expect = 2.5e-29
Identity = 68/108 (62.96%), Postives = 90/108 (83.33%), Query Frame = 0


Query: 1   MASKQMEECFKGTEKEVLGLKEMMLELKKVVERMAEDMRENSSYRRREESGTSNSSVMKL 60
           MA +QMEE   GTEKE++GLKEMMLE+KK VER+A++M+E+ SY+++EESGTSN SVMK+
Sbjct: 88  MAQRQMEERVDGTEKEIMGLKEMMLEMKKAVERLADEMKESQSYKKKEESGTSNGSVMKM 147

Query: 61  KGKMEDQETPMDNMTSTIDRSKYKKLEMSLFMGKNLELWVYRAEHFLK 109
           KGKME+ E   +   ++IDRSKYKKL+M +F+G+N E WVYRAEHF +
Sbjct: 148 KGKMEETELMTETNVTSIDRSKYKKLKMPMFLGENPESWVYRAEHFFE 195

[Close]

BLAST of PI0020470 vs. ExPASy TrEMBL
Match: A0A5A7TII1 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold128G001860 PE=4 SV=1)

HSP 1 Score: 133.3 bits (334), Expect = 6.2e-28
Identity = 66/108 (61.11%), Postives = 89/108 (82.41%), Query Frame = 0


Query: 1   MASKQMEECFKGTEKEVLGLKEMMLELKKVVERMAEDMRENSSYRRREESGTSNSSVMKL 60
           MA +QMEE  +GTEKEVL LKEMMLE+KK ++R+A+++REN SY+++EESGTS+ S+MK+
Sbjct: 1   MAQRQMEERLEGTEKEVLSLKEMMLEMKKSMDRLADELRENQSYKKKEESGTSDGSIMKM 60

Query: 61  KGKMEDQETPMDNMTSTIDRSKYKKLEMSLFMGKNLELWVYRAEHFLK 109
           KGKME+ +   +  T  +DRSKYKKLEM +F+G+N E WVYRAEHF +
Sbjct: 61  KGKMEETDITGEVNTHLVDRSKYKKLEMPMFLGENPESWVYRAEHFFE 108

[Close]

BLAST of PI0020470 vs. ExPASy TrEMBL
Match: A0A5D3CXP0 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold32G00230 PE=4 SV=1)

HSP 1 Score: 133.3 bits (334), Expect = 6.2e-28
Identity = 66/108 (61.11%), Postives = 89/108 (82.41%), Query Frame = 0


Query: 1   MASKQMEECFKGTEKEVLGLKEMMLELKKVVERMAEDMRENSSYRRREESGTSNSSVMKL 60
           MA +QMEE  +GTEKEVL LKEMMLE+KK ++R+A+++REN SY+++EESGTS+ S+MK+
Sbjct: 1   MAQRQMEERLEGTEKEVLSLKEMMLEMKKSMDRLADELRENQSYKKKEESGTSDGSIMKM 60

Query: 61  KGKMEDQETPMDNMTSTIDRSKYKKLEMSLFMGKNLELWVYRAEHFLK 109
           KGKME+ +   +  T  +DRSKYKKLEM +F+G+N E WVYRAEHF +
Sbjct: 61  KGKMEETDITGEVNTHLVDRSKYKKLEMPMFLGENPESWVYRAEHFFE 108

[Close]

BLAST of PI0020470 vs. ExPASy TrEMBL
Match: A0A5D3DVI3 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold325G00980 PE=4 SV=1)

HSP 1 Score: 132.5 bits (332), Expect = 1.1e-27
Identity = 65/108 (60.19%), Postives = 89/108 (82.41%), Query Frame = 0


Query: 1   MASKQMEECFKGTEKEVLGLKEMMLELKKVVERMAEDMRENSSYRRREESGTSNSSVMKL 60
           MA +QMEE  +GT+KEVL LKEMMLE+KK ++R A+++REN SY+++EESGTS+ S+MK+
Sbjct: 1   MAQRQMEERLEGTKKEVLSLKEMMLEMKKSMDRPADELRENQSYKKKEESGTSDGSIMKM 60

Query: 61  KGKMEDQETPMDNMTSTIDRSKYKKLEMSLFMGKNLELWVYRAEHFLK 109
           KGKME+ +   +  T+ +DRSKYKKLEM +F+G+N E WVYRAEHF +
Sbjct: 61  KGKMEEMDVTTEVNTTMVDRSKYKKLEMPMFLGENPESWVYRAEHFFE 108

[Close]

BLAST of PI0020470 vs. NCBI nr
Match: KAA0065941.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYK30285.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 141.7 bits (356), Expect = 3.6e-30
Identity = 70/108 (64.81%), Postives = 90/108 (83.33%), Query Frame = 0


Query: 1   MASKQMEECFKGTEKEVLGLKEMMLELKKVVERMAEDMRENSSYRRREESGTSNSSVMKL 60
           MA +QMEE   GTEKE++GLKE+MLE+KK +ER+A++M+E+ SY++REESGTSN SVMKL
Sbjct: 1   MAQRQMEESVDGTEKEIMGLKEIMLEMKKAIERLADEMKESQSYKKREESGTSNGSVMKL 60

Query: 61  KGKMEDQETPMDNMTSTIDRSKYKKLEMSLFMGKNLELWVYRAEHFLK 109
           KGKME+ E   +   ++IDRSKYKKLEM +F+G+N E WVYRAEHF K
Sbjct: 61  KGKMEETELMTETNVASIDRSKYKKLEMPMFLGENPESWVYRAEHFFK 108

[Close]

BLAST of PI0020470 vs. NCBI nr
Match: KAA0063772.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYK05524.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 137.9 bits (346), Expect = 5.2e-29
Identity = 68/108 (62.96%), Postives = 90/108 (83.33%), Query Frame = 0


Query: 1   MASKQMEECFKGTEKEVLGLKEMMLELKKVVERMAEDMRENSSYRRREESGTSNSSVMKL 60
           MA +QMEE   GTEKE++GLKEMMLE+KK VER+A++M+E+ SY+++EESGTSN SVMK+
Sbjct: 88  MAQRQMEERVDGTEKEIMGLKEMMLEMKKAVERLADEMKESQSYKKKEESGTSNGSVMKM 147

Query: 61  KGKMEDQETPMDNMTSTIDRSKYKKLEMSLFMGKNLELWVYRAEHFLK 109
           KGKME+ E   +   ++IDRSKYKKL+M +F+G+N E WVYRAEHF +
Sbjct: 148 KGKMEETELMTETNVTSIDRSKYKKLKMPMFLGENPESWVYRAEHFFE 195

[Close]

BLAST of PI0020470 vs. NCBI nr
Match: KAA0041225.1 (uncharacterized protein E6C27_scaffold128G001860 [Cucumis melo var. makuwa])

HSP 1 Score: 133.3 bits (334), Expect = 1.3e-27
Identity = 66/108 (61.11%), Postives = 89/108 (82.41%), Query Frame = 0


Query: 1   MASKQMEECFKGTEKEVLGLKEMMLELKKVVERMAEDMRENSSYRRREESGTSNSSVMKL 60
           MA +QMEE  +GTEKEVL LKEMMLE+KK ++R+A+++REN SY+++EESGTS+ S+MK+
Sbjct: 1   MAQRQMEERLEGTEKEVLSLKEMMLEMKKSMDRLADELRENQSYKKKEESGTSDGSIMKM 60

Query: 61  KGKMEDQETPMDNMTSTIDRSKYKKLEMSLFMGKNLELWVYRAEHFLK 109
           KGKME+ +   +  T  +DRSKYKKLEM +F+G+N E WVYRAEHF +
Sbjct: 61  KGKMEETDITGEVNTHLVDRSKYKKLEMPMFLGENPESWVYRAEHFFE 108

[Close]

BLAST of PI0020470 vs. NCBI nr
Match: XP_031745528.1 (uncharacterized protein LOC116405915 [Cucumis sativus])

HSP 1 Score: 133.3 bits (334), Expect = 1.3e-27
Identity = 68/108 (62.96%), Postives = 87/108 (80.56%), Query Frame = 0


Query: 1   MASKQMEECFKGTEKEVLGLKEMMLELKKVVERMAEDMRENSSYRRREESGTSNSSVMKL 60
           MA +Q+E+   GTEKE++GLKEM+LE+KK +ERMAED+REN SY+RREESGTS+ SVMKL
Sbjct: 1   MAQRQIEDRVDGTEKEIMGLKEMLLEMKKAMERMAEDLRENHSYKRREESGTSDGSVMKL 60

Query: 61  KGKMEDQETPMDNMTSTIDRSKYKKLEMSLFMGKNLELWVYRAEHFLK 109
           KGK E+ +   +   +  DRSKYKKLEM +F+G+N E WVYRAEHF +
Sbjct: 61  KGKAEETDVHNEGNLTMGDRSKYKKLEMPMFLGENPESWVYRAEHFFE 108

[Close]

BLAST of PI0020470 vs. NCBI nr
Match: TYK16028.1 (uncharacterized protein E5676_scaffold32G00230 [Cucumis melo var. makuwa])

HSP 1 Score: 133.3 bits (334), Expect = 1.3e-27
Identity = 66/108 (61.11%), Postives = 89/108 (82.41%), Query Frame = 0


Query: 1   MASKQMEECFKGTEKEVLGLKEMMLELKKVVERMAEDMRENSSYRRREESGTSNSSVMKL 60
           MA +QMEE  +GTEKEVL LKEMMLE+KK ++R+A+++REN SY+++EESGTS+ S+MK+
Sbjct: 1   MAQRQMEERLEGTEKEVLSLKEMMLEMKKSMDRLADELRENQSYKKKEESGTSDGSIMKM 60

Query: 61  KGKMEDQETPMDNMTSTIDRSKYKKLEMSLFMGKNLELWVYRAEHFLK 109
           KGKME+ +   +  T  +DRSKYKKLEM +F+G+N E WVYRAEHF +
Sbjct: 61  KGKMEETDITGEVNTHLVDRSKYKKLEMPMFLGENPESWVYRAEHFFE 108

The following BLAST results are available for this feature:

BLAST of PI0020470 vs.


Match Name	E-value	Identity	Description

BLAST of PI0020470 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3E4T6	1.7e-30	64.81	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7V689	2.5e-29	62.96	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7TII1	6.2e-28	61.11	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5D3CXP0	6.2e-28	61.11	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5D3DVI3	1.1e-27	60.19	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]

BLAST of PI0020470 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0065941.1	3.6e-30	64.81	retrotransposon protein [Cucumis melo var. makuwa] >TYK30285.1 retrotransposon p...	[more]
KAA0063772.1	5.2e-29	62.96	retrotransposon protein [Cucumis melo var. makuwa] >TYK05524.1 retrotransposon p...	[more]
KAA0041225.1	1.3e-27	61.11	uncharacterized protein E6C27_scaffold128G001860 [Cucumis melo var. makuwa]	[more]
XP_031745528.1	1.3e-27	62.96	uncharacterized protein LOC116405915 [Cucumis sativus]	[more]
TYK16028.1	1.3e-27	61.11	uncharacterized protein E5676_scaffold32G00230 [Cucumis melo var. makuwa]	[more]

BLAST of PI0020470 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 20..40
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 37..76

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
PI0020470.1	PI0020470.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
biological_process	GO:0019432	triglyceride biosynthetic process
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0016746	acyltransferase activity
molecular_function	GO:0003723	RNA binding