PI0020069 (gene) Melon (PI 482460) v1

Overview


Name	PI0020069
Type	gene
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	Unknown protein
Location	chr11: 23471150 .. 23471326 (+)
RNA-Seq Expression	PI0020069
Synteny	PI0020069

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGGAGGAAGAGCCTAAGGAAAAGAGTAATCAAGTAATTACTATAACAAGTGATAGCGGAGAAAAGGAACAAGATCAGAAGAGTTTTGCTCTTGGTGTTTCAAATGGAAGAGGCTTTAAGGACAAGTCCAGGGGACAGTCATTCCGAACAAAGAGTTCAGGAAGTGTTTTTTAG

mRNA sequence

ATGGAGGAGGAAGAGCCTAAGGAAAAGAGTAATCAAGTAATTACTATAACAAGTGATAGCGGAGAAAAGGAACAAGATCAGAAGAGTTTTGCTCTTGGTGTTTCAAATGGAAGAGGCTTTAAGGACAAGTCCAGGGGACAGTCATTCCGAACAAAGAGTTCAGGAAGTGTTTTTTAG

Coding sequence (CDS)

ATGGAGGAGGAAGAGCCTAAGGAAAAGAGTAATCAAGTAATTACTATAACAAGTGATAGCGGAGAAAAGGAACAAGATCAGAAGAGTTTTGCTCTTGGTGTTTCAAATGGAAGAGGCTTTAAGGACAAGTCCAGGGGACAGTCATTCCGAACAAAGAGTTCAGGAAGTGTTTTTTAG

Protein sequence

MEEEEPKEKSNQVITITSDSGEKEQDQKSFALGVSNGRGFKDKSRGQSFRTKSSGSVF

Homology

[Close]

BLAST of PI0020069 vs. ExPASy TrEMBL
Match: A0A5D3CJR7 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold304G001020 PE=4 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 2.3e-05
Identity = 39/59 (66.10%), Postives = 45/59 (76.27%), Query Frame = 0


Query: 1   MEEEEPKEKSNQVITITSDSGEKEQDQK-SFALGVSNGRGFKDKSRGQSFRTKSSGSVF 59
           MEEEE KEK  QV+TITSDS EKEQD+K SF   VS GRGFK+KSRG+S ++K    VF
Sbjct: 69  MEEEEHKEKRKQVVTITSDS-EKEQDKKSSFTPCVSKGRGFKNKSRGKSSQSKEFWVVF 126

[Close]

BLAST of PI0020069 vs. NCBI nr
Match: TYK11775.1 (uncharacterized protein E5676_scaffold304G001020 [Cucumis melo var. makuwa])

HSP 1 Score: 57.4 bits (137), Expect = 4.8e-05
Identity = 39/59 (66.10%), Postives = 45/59 (76.27%), Query Frame = 0


Query: 1   MEEEEPKEKSNQVITITSDSGEKEQDQK-SFALGVSNGRGFKDKSRGQSFRTKSSGSVF 59
           MEEEE KEK  QV+TITSDS EKEQD+K SF   VS GRGFK+KSRG+S ++K    VF
Sbjct: 69  MEEEEHKEKRKQVVTITSDS-EKEQDKKSSFTPCVSKGRGFKNKSRGKSSQSKEFWVVF 126

The following BLAST results are available for this feature:

BLAST of PI0020069 vs.


Match Name	E-value	Identity	Description

BLAST of PI0020069 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3CJR7	2.3e-05	66.10	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]

BLAST of PI0020069 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK11775.1	4.8e-05	66.10	uncharacterized protein E5676_scaffold304G001020 [Cucumis melo var. makuwa]	[more]

BLAST of PI0020069 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..58

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
PI0020069.1	PI0020069.1	mRNA