PI0018924 (gene) Melon (PI 482460) v1

Overview
NamePI0018924
Typegene
OrganismCucumis metuliferus (Melon (PI 482460) v1)
DescriptionDNA/RNA polymerases superfamily protein
Locationchr05: 6299054 .. 6299425 (-)
RNA-Seq ExpressionPI0018924
SyntenyPI0018924
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAATGTCTGAGTAATCCTCATAACAGAACTGAGAAAAACGTGGAAGAAAGTATGTTCAACCGTTTTTCCCAAAGAGTTGCAAATCACCTTATGTCTACAAACCCTACAGTAGATAAGAAGTTTATCATTGAAAGGTTGAAGGCATTGGGAGCAACAAATTTCGAAGGGACCACTGATCCAGTCGATGCGGAGAAATGGTTGACCTTGGTTGAGAAGTGTTTTAGGGTGATGGAGTGCCTCGAAGAAAAGAAAGTGAAATTAGCAACATTTTTATTGCAAGGAAGCGTCGAAGATTGGTGGACTCTCCACGTGGCAAAAGCGGGCGGAATGAGCTTTGTTTCTTGGAGAGAGTTTCGAAAGACGTTTTAG

mRNA sequence

ATGAAATGTCTGAGTAATCCTCATAACAGAACTGAGAAAAACGTGGAAGAAAGTATGTTCAACCGTTTTTCCCAAAGAGTTGCAAATCACCTTATGTCTACAAACCCTACAGTAGATAAGAAGTTTATCATTGAAAGGTTGAAGGCATTGGGAGCAACAAATTTCGAAGGGACCACTGATCCAGTCGATGCGGAGAAATGGTTGACCTTGGTTGAGAAGTGTTTTAGGGTGATGGAGTGCCTCGAAGAAAAGAAAGTGAAATTAGCAACATTTTTATTGCAAGGAAGCGTCGAAGATTGGTGGACTCTCCACGTGGCAAAAGCGGGCGGAATGAGCTTTGTTTCTTGGAGAGAGTTTCGAAAGACGTTTTAG

Coding sequence (CDS)

ATGAAATGTCTGAGTAATCCTCATAACAGAACTGAGAAAAACGTGGAAGAAAGTATGTTCAACCGTTTTTCCCAAAGAGTTGCAAATCACCTTATGTCTACAAACCCTACAGTAGATAAGAAGTTTATCATTGAAAGGTTGAAGGCATTGGGAGCAACAAATTTCGAAGGGACCACTGATCCAGTCGATGCGGAGAAATGGTTGACCTTGGTTGAGAAGTGTTTTAGGGTGATGGAGTGCCTCGAAGAAAAGAAAGTGAAATTAGCAACATTTTTATTGCAAGGAAGCGTCGAAGATTGGTGGACTCTCCACGTGGCAAAAGCGGGCGGAATGAGCTTTGTTTCTTGGAGAGAGTTTCGAAAGACGTTTTAG

Protein sequence

MKCLSNPHNRTEKNVEESMFNRFSQRVANHLMSTNPTVDKKFIIERLKALGATNFEGTTDPVDAEKWLTLVEKCFRVMECLEEKKVKLATFLLQGSVEDWWTLHVAKAGGMSFVSWREFRKTF
Homology
BLAST of PI0018924 vs. ExPASy TrEMBL
Match: A0A5D3BTQ7 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold155G00590 PE=4 SV=1)

HSP 1 Score: 138.3 bits (347), Expect = 2.2e-29
Identity = 70/111 (63.06%), Postives = 82/111 (73.87%), Query Frame = 0

Query: 5   SNPHNRTEKNVEESMFNRFSQRVANHLMSTNPTVDKKFIIERLKALGATNFEGTTDPVDA 64
           SNPH+   +N EESMF RFSQR+  H   T   V+K+F IERLKALGAT FEGTT+P + 
Sbjct: 3   SNPHDPIGQNAEESMFYRFSQRLVAHF--TPYAVNKRFGIERLKALGATTFEGTTNPANV 62

Query: 65  EKWLTLVEKCFRVMECLEEKKVKLATFLLQGSVEDWWTLHVAKAGGMSFVS 116
           EKWL+L+EK F VM+C  E+ VKLAT LLQGSVEDWWT H A+  GM  VS
Sbjct: 63  EKWLSLIEKYFGVMKCSVERGVKLATILLQGSVEDWWTFHTARVRGMDSVS 111

BLAST of PI0018924 vs. ExPASy TrEMBL
Match: A0A5D3BB91 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold110G001760 PE=4 SV=1)

HSP 1 Score: 125.9 bits (315), Expect = 1.1e-25
Identity = 58/114 (50.88%), Postives = 77/114 (67.54%), Query Frame = 0

Query: 10  RTEKNVEESMFNRFSQRVANHLMSTNPTVDKKFIIERLKALGATNFEGTTDPVDAEKWLT 69
           R E+NVEE + +R +QR+ + + S     +KK+  ERLKALGAT F GTT+P D E WLT
Sbjct: 36  RVEENVEEQLLDRLAQRLVSGIRSAQSDPEKKYGFERLKALGATTFAGTTNPTDVEAWLT 95

Query: 70  LVEKCFRVMECLEEKKVKLATFLLQGSVEDWWTLHVAKAGGMSFVSWREFRKTF 124
           L+EKCFRV   LE++KV+LA FLLQ   EDWW +  ++      +SW EF+K F
Sbjct: 96  LIEKCFRVTRYLEDRKVELAAFLLQNDAEDWWRMEESRRRTTGDMSWDEFKKAF 149

BLAST of PI0018924 vs. ExPASy TrEMBL
Match: A0A5A7U067 (Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold648G00470 PE=4 SV=1)

HSP 1 Score: 124.8 bits (312), Expect = 2.5e-25
Identity = 58/112 (51.79%), Postives = 77/112 (68.75%), Query Frame = 0

Query: 12  EKNVEESMFNRFSQRVANHLMSTNPTVDKKFIIERLKALGATNFEGTTDPVDAEKWLTLV 71
           E NVEE + +R +Q + + + S    ++K F IERLKALGAT F GTT+  DAE WLTL+
Sbjct: 38  EVNVEEQLLDRLAQGLVSGIRSAQSNLEKNFWIERLKALGATTFAGTTNLADAEAWLTLI 97

Query: 72  EKCFRVMECLEEKKVKLATFLLQGSVEDWWTLHVAKAGGMSFVSWREFRKTF 124
           EKCF+VM CLE++KV+L  FLL+   EDWW L  ++      +SW EF+KTF
Sbjct: 98  EKCFKVMRCLEDRKVELVVFLLKNGTEDWWRLTESRRRATVDMSWDEFKKTF 149

BLAST of PI0018924 vs. ExPASy TrEMBL
Match: A0A5A7SJ99 (DNA/RNA polymerases superfamily protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold305G00100 PE=4 SV=1)

HSP 1 Score: 124.0 bits (310), Expect = 4.3e-25
Identity = 60/119 (50.42%), Postives = 79/119 (66.39%), Query Frame = 0

Query: 5   SNPHNRTEKNVEESMFNRFSQRVANHLMSTNPTVDKKFIIERLKALGATNFEGTTDPVDA 64
           S PH   E NVEE + +R +QR+   +       +KK+ IERLKALGAT F GTT+PVDA
Sbjct: 33  SRPH--VEGNVEEQLLDRLAQRLILGIRLAQSDSEKKYGIERLKALGATTFVGTTNPVDA 92

Query: 65  EKWLTLVEKCFRVMECLEEKKVKLATFLLQGSVEDWWTLHVAKAGGMSFVSWREFRKTF 124
           E+WLTL+EKCF+V  C E++KV+LA FLLQ   EDWW +  ++      + W EF+K F
Sbjct: 93  EEWLTLIEKCFKVTRCSEDRKVELAAFLLQNGAEDWWHMEESRRRTTGDMIWGEFKKAF 149

BLAST of PI0018924 vs. ExPASy TrEMBL
Match: A0A5D3BWX9 (Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold24967G00130 PE=4 SV=1)

HSP 1 Score: 119.0 bits (297), Expect = 1.4e-23
Identity = 53/90 (58.89%), Postives = 65/90 (72.22%), Query Frame = 0

Query: 32  MSTNPTVDKKFIIERLKALGATNFEGTTDPVDAEKWLTLVEKCFRVMECLEEKKVKLATF 91
           MS+NP       I+RLKALG  +FEG T+P D ++WL+L+  CF V+EC EEKKVKLATF
Sbjct: 32  MSSNPPNPMGKTIKRLKALGVMSFEGITNPADVDEWLSLIVMCFEVIECSEEKKVKLATF 91

Query: 92  LLQGSVEDWWTLHVAKAGGMSFVSWREFRK 122
           LLQ   +DWWT HVA+ GG  +V W EFRK
Sbjct: 92  LLQSIAKDWWTFHVARVGGTKYVMWEEFRK 121

BLAST of PI0018924 vs. NCBI nr
Match: KAA0035024.1 (hypothetical protein E6C27_scaffold57G00740 [Cucumis melo var. makuwa] >TYK02358.1 hypothetical protein E5676_scaffold155G00590 [Cucumis melo var. makuwa])

HSP 1 Score: 138.3 bits (347), Expect = 4.5e-29
Identity = 70/111 (63.06%), Postives = 82/111 (73.87%), Query Frame = 0

Query: 5   SNPHNRTEKNVEESMFNRFSQRVANHLMSTNPTVDKKFIIERLKALGATNFEGTTDPVDA 64
           SNPH+   +N EESMF RFSQR+  H   T   V+K+F IERLKALGAT FEGTT+P + 
Sbjct: 3   SNPHDPIGQNAEESMFYRFSQRLVAHF--TPYAVNKRFGIERLKALGATTFEGTTNPANV 62

Query: 65  EKWLTLVEKCFRVMECLEEKKVKLATFLLQGSVEDWWTLHVAKAGGMSFVS 116
           EKWL+L+EK F VM+C  E+ VKLAT LLQGSVEDWWT H A+  GM  VS
Sbjct: 63  EKWLSLIEKYFGVMKCSVERGVKLATILLQGSVEDWWTFHTARVRGMDSVS 111

BLAST of PI0018924 vs. NCBI nr
Match: TYJ95881.1 (retrotransposon protein, putative, Ty3-gypsy subclass [Cucumis melo var. makuwa])

HSP 1 Score: 125.9 bits (315), Expect = 2.3e-25
Identity = 58/114 (50.88%), Postives = 77/114 (67.54%), Query Frame = 0

Query: 10  RTEKNVEESMFNRFSQRVANHLMSTNPTVDKKFIIERLKALGATNFEGTTDPVDAEKWLT 69
           R E+NVEE + +R +QR+ + + S     +KK+  ERLKALGAT F GTT+P D E WLT
Sbjct: 36  RVEENVEEQLLDRLAQRLVSGIRSAQSDPEKKYGFERLKALGATTFAGTTNPTDVEAWLT 95

Query: 70  LVEKCFRVMECLEEKKVKLATFLLQGSVEDWWTLHVAKAGGMSFVSWREFRKTF 124
           L+EKCFRV   LE++KV+LA FLLQ   EDWW +  ++      +SW EF+K F
Sbjct: 96  LIEKCFRVTRYLEDRKVELAAFLLQNDAEDWWRMEESRRRTTGDMSWDEFKKAF 149

BLAST of PI0018924 vs. NCBI nr
Match: KAA0047616.1 (uncharacterized protein E6C27_scaffold115G00890 [Cucumis melo var. makuwa] >TYK08273.1 uncharacterized protein E5676_scaffold648G00470 [Cucumis melo var. makuwa])

HSP 1 Score: 124.8 bits (312), Expect = 5.2e-25
Identity = 58/112 (51.79%), Postives = 77/112 (68.75%), Query Frame = 0

Query: 12  EKNVEESMFNRFSQRVANHLMSTNPTVDKKFIIERLKALGATNFEGTTDPVDAEKWLTLV 71
           E NVEE + +R +Q + + + S    ++K F IERLKALGAT F GTT+  DAE WLTL+
Sbjct: 38  EVNVEEQLLDRLAQGLVSGIRSAQSNLEKNFWIERLKALGATTFAGTTNLADAEAWLTLI 97

Query: 72  EKCFRVMECLEEKKVKLATFLLQGSVEDWWTLHVAKAGGMSFVSWREFRKTF 124
           EKCF+VM CLE++KV+L  FLL+   EDWW L  ++      +SW EF+KTF
Sbjct: 98  EKCFKVMRCLEDRKVELVVFLLKNGTEDWWRLTESRRRATVDMSWDEFKKTF 149

BLAST of PI0018924 vs. NCBI nr
Match: XP_038896366.1 (uncharacterized protein LOC120084630 [Benincasa hispida])

HSP 1 Score: 124.0 bits (310), Expect = 8.9e-25
Identity = 59/112 (52.68%), Postives = 73/112 (65.18%), Query Frame = 0

Query: 12  EKNVEESMFNRFSQRVANHLMSTNPTVDKKFIIERLKALGATNFEGTTDPVDAEKWLTLV 71
           EK+ EE   N+F+QR+   L +  P + KK+ IERLKALGATNFEGT DP +AE W+  +
Sbjct: 26  EKSREEEQMNKFTQRLQASLENIQPDLKKKYGIERLKALGATNFEGTKDPANAEAWMNQI 85

Query: 72  EKCFRVMECLEEKKVKLATFLLQGSVEDWWTLHVAKAGGMSFVSWREFRKTF 124
           EK F VM C + +KV LATFLLQ   EDWW L   + G    + W EFRK F
Sbjct: 86  EKYFEVMRCPKNRKVSLATFLLQKQAEDWWKLLKNRRGNQEEICWEEFRKAF 137

BLAST of PI0018924 vs. NCBI nr
Match: KAA0026280.1 (DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa] >TYK21476.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa])

HSP 1 Score: 124.0 bits (310), Expect = 8.9e-25
Identity = 60/119 (50.42%), Postives = 79/119 (66.39%), Query Frame = 0

Query: 5   SNPHNRTEKNVEESMFNRFSQRVANHLMSTNPTVDKKFIIERLKALGATNFEGTTDPVDA 64
           S PH   E NVEE + +R +QR+   +       +KK+ IERLKALGAT F GTT+PVDA
Sbjct: 33  SRPH--VEGNVEEQLLDRLAQRLILGIRLAQSDSEKKYGIERLKALGATTFVGTTNPVDA 92

Query: 65  EKWLTLVEKCFRVMECLEEKKVKLATFLLQGSVEDWWTLHVAKAGGMSFVSWREFRKTF 124
           E+WLTL+EKCF+V  C E++KV+LA FLLQ   EDWW +  ++      + W EF+K F
Sbjct: 93  EEWLTLIEKCFKVTRCSEDRKVELAAFLLQNGAEDWWHMEESRRRTTGDMIWGEFKKAF 149

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5D3BTQ72.2e-2963.06Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5D3BB911.1e-2550.88Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold11... [more]
A0A5A7U0672.5e-2551.79Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 ... [more]
A0A5A7SJ994.3e-2550.42DNA/RNA polymerases superfamily protein OS=Cucumis melo var. makuwa OX=1194695 G... [more]
A0A5D3BWX91.4e-2358.89Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 ... [more]
Match NameE-valueIdentityDescription
KAA0035024.14.5e-2963.06hypothetical protein E6C27_scaffold57G00740 [Cucumis melo var. makuwa] >TYK02358... [more]
TYJ95881.12.3e-2550.88retrotransposon protein, putative, Ty3-gypsy subclass [Cucumis melo var. makuwa][more]
KAA0047616.15.2e-2551.79uncharacterized protein E6C27_scaffold115G00890 [Cucumis melo var. makuwa] >TYK0... [more]
XP_038896366.18.9e-2552.68uncharacterized protein LOC120084630 [Benincasa hispida][more]
KAA0026280.18.9e-2550.42DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa] >TYK21476.1 D... [more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
PI0018924.1PI0018924.1mRNA