PI0017719 (gene) Melon (PI 482460) v1

Overview
NamePI0017719
Typegene
OrganismCucumis metuliferus (Melon (PI 482460) v1)
DescriptionRetrovirus-related Pol polyprotein from transposon 17.6
Locationchr05: 8678794 .. 8680500 (-)
RNA-Seq ExpressionPI0017719
SyntenyPI0017719
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTACAACTCCAACCACGTACTGGCTAATGATCTGGGAGCTTCCAGCAAACTAAGGCAGCCTATCAGAAACCAGGAGCTCGATCTCTACCTGGAAAGTGGAAAACATTTTGAAAGGGTAAGCTATAAAGCTCAGTGAGTGACTAAGTTTAAAACTGTAAATCTAAAGATCAGAGCACATGGAAACTTTACACATATAAATTTGTTTAATCAAAACCTTAAGTATAAACGTGTAATACTAACAGCTTTCTCAAATACTCAGCAAGCTTGTCATTGGTATCTAGCAACGCATATCAAATATGTTAAAGATTTTAACTAACATAACAAATCTACGTTGTGTAGGACACGTCCAGTTCAACCAACGTTTACTATGTAGTGGGGCCCACCCAGCACTCCCATCGTCTTTGTCGTAGTGAGGCTCGTCCAGCACTCACGACAGCATCGTTTGTTACAGAGTACACTCAATGTCAACAACAGAATCTAACCTGTGTGCACACGGTACCATATAGCCTTAGGCTCAACATCTCAGTCATGTAGTTAACAGAAATCTCAAAAAGTCATATGAAAACATTAAAACATGCCTGCTATCTATCTTTTGTAAAACTCAAGCTTACTCAGATTATTTGTGGAAAACTGAAAAATCTAAAAAAAAAACAATACTTGCTTAAAATGATATTGTTTCAACTACTTTTCAGAAAGTCGATAATAACACTCTTACATATAAACTTAATCATAAAACCTAAGCTTGAAACCGTTCATAGAAATAAGGTACTATTCATAAAATCAGGTTCAAGCATTTTCTAAATAATCATGGATAATAGTTTAGAATTCTGTTTTGAAATCTATTTTGTCACTCACAGCCTTAGGCTAGTTCCCTGGTGTATAGACTCGACCTATTTCCTCTTGGCTTGTCAAACAAACCAAAACCGAGCATCAGAACCTTAGTCTTGTATCTTTATACTAAACTTAAGATGACGCACAAAAGATGACATTCATCAATTATAAATTTAGACATAAAAGAACATTTCTCAATTTTCCCCGGAATTTTCCAAATTTAACAACCTAACTTCAAACCATCATAACTTTCTCAATACTTCATCAAAATTAATGTACTCTATATTAAACTCTTCCTTTTGAACTCTTCTACAACTTACTTGAAGGAAAGAAAATGAGATTCCCAACAGATTGCTACAGAAATCACCCAACTTACTTGATATCTGGTCTCGTATCATTCGGGATATGGCGTCCTCTCATAGGGTTGGGGGGTGGGACGTTGAGTTGTCTTGGTCAGTCGTAAGGGTATTGGGAAGGGTGTAATGAGGAAGCTTTGGTGTGTGCTCTGGTGTGCTTTTATCTACTTTATATGGAATGAGTGGAATCGTCGTCTCCATGGTGGCCCGGCTCGTGAGCCTAATATCCTGATTCAGTGTATTTGCTCTACTGTTCATGCTCGTGTTGTCTCTTGGCAGGAGGATGTTCATGATCTTATCTAGTGCTTTCCATTGCTGCTGTTTGGTTGTTTTTTTTGTGGATTGGTTTTCCTTTTGGTTTGTTTCCCCAGTTGTGGGGTTTTTTTGGTGCTGGATTCGTGTATTGTTTCTTTATCTTTGTTGTGTTTGCTGGTTTTTTTTTTCTGTTTGTGGTTTTAAGCTTTCTTGGCTCTGGTGCTTTGGCCTCGGGTTGTGAGGTCCTCCTTGTTTTTGTATAA

mRNA sequence

ATGTACAACTCCAACCACGTACTGGCTAATGATCTGGGAGCTTCCAGCAAACTAAGGCAGCCTATCAGAAACCAGGAGCTCGATCTCTACCTGGAAAGTGGAAAACATTTTGAAAGGGACACGTCCAGTTCAACCAACGTTTACTATGTAGTGGGGCCCACCCAGCACTCCCATCGTCTTTGTCGTAGTGAGGCTCGTCCAGCACTCACGACAGCATCGTTTGTTACAGAGTACACTCAATGTCAACAACAGAATCTAACCTGTGTGCACACGGTACCATATAGCCTTAGGCTCAACATCTCAGTCATGAAAGAAAATGAGATTCCCAACAGATTGCTACAGAAATCACCCAACTTACTTGATATCTGGTCTCGTATCATTCGGGATATGGCGTCCTCTCATAGGGTTGGGGGGTGGGACGTTGAGTTGTCTTGGAGGATGTTCATGATCTTATCTAGTGCTTTCCATTGCTGCTGTTTGGTTGTTTTTTTTGTGGATTGGTTTTCCTTTTGCTTTCTTGGCTCTGGTGCTTTGGCCTCGGGTTGTGAGGTCCTCCTTGTTTTTGTATAA

Coding sequence (CDS)

ATGTACAACTCCAACCACGTACTGGCTAATGATCTGGGAGCTTCCAGCAAACTAAGGCAGCCTATCAGAAACCAGGAGCTCGATCTCTACCTGGAAAGTGGAAAACATTTTGAAAGGGACACGTCCAGTTCAACCAACGTTTACTATGTAGTGGGGCCCACCCAGCACTCCCATCGTCTTTGTCGTAGTGAGGCTCGTCCAGCACTCACGACAGCATCGTTTGTTACAGAGTACACTCAATGTCAACAACAGAATCTAACCTGTGTGCACACGGTACCATATAGCCTTAGGCTCAACATCTCAGTCATGAAAGAAAATGAGATTCCCAACAGATTGCTACAGAAATCACCCAACTTACTTGATATCTGGTCTCGTATCATTCGGGATATGGCGTCCTCTCATAGGGTTGGGGGGTGGGACGTTGAGTTGTCTTGGAGGATGTTCATGATCTTATCTAGTGCTTTCCATTGCTGCTGTTTGGTTGTTTTTTTTGTGGATTGGTTTTCCTTTTGCTTTCTTGGCTCTGGTGCTTTGGCCTCGGGTTGTGAGGTCCTCCTTGTTTTTGTATAA

Protein sequence

MYNSNHVLANDLGASSKLRQPIRNQELDLYLESGKHFERDTSSSTNVYYVVGPTQHSHRLCRSEARPALTTASFVTEYTQCQQQNLTCVHTVPYSLRLNISVMKENEIPNRLLQKSPNLLDIWSRIIRDMASSHRVGGWDVELSWRMFMILSSAFHCCCLVVFFVDWFSFCFLGSGALASGCEVLLVFV
Homology
BLAST of PI0017719 vs. ExPASy TrEMBL
Match: A0A5A7UHH6 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold552G001190 PE=4 SV=1)

HSP 1 Score: 82.0 bits (201), Expect = 2.9e-12
Identity = 45/72 (62.50%), Postives = 49/72 (68.06%), Query Frame = 0

Query: 35  KHFERDTSSSTNVYY---VVGPTQHSHRLCRSEARPALTTASFVTEYTQCQQQNLTCVHT 94
           KHF R T S+TNVY    VVGP QHSH L RS AR AL  +  V EY Q QQ NLTCVH 
Sbjct: 54  KHFGRGTPSTTNVYKLYDVVGPVQHSHHLYRSGARSALNDSIVVMEYAQSQQWNLTCVHM 113

Query: 95  VPYSLRLNISVM 104
           +PYSL LN SV+
Sbjct: 114 LPYSLGLNTSVL 125

BLAST of PI0017719 vs. ExPASy TrEMBL
Match: A0A5A7TDA8 (Retrovirus-related Pol polyprotein from transposon 17.6 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold128G00460 PE=4 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 5.3e-06
Identity = 32/44 (72.73%), Postives = 34/44 (77.27%), Query Frame = 0

Query: 35  KHFERDTSSSTNVYY---VVGPTQHSHRLCRSEARPALTTASFV 76
           KHF R T  +TNVY    VVGPTQHSHRLCRS ARPALTTAS +
Sbjct: 237 KHFGRGTLHTTNVYKLYDVVGPTQHSHRLCRSGARPALTTASLL 280

BLAST of PI0017719 vs. ExPASy TrEMBL
Match: A0A5D3BTH0 (Retrovirus-related Pol polyprotein from transposon 17.6 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1738G001040 PE=4 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 5.8e-05
Identity = 30/44 (68.18%), Postives = 34/44 (77.27%), Query Frame = 0

Query: 35  KHFERDTSSSTNVYY---VVGPTQHSHRLCRSEARPALTTASFV 76
           KHF R T ++TNVY    VVGPTQ+SHRLCRS A PALTTAS +
Sbjct: 236 KHFGRGTLNTTNVYKLYDVVGPTQYSHRLCRSGAHPALTTASLL 279

BLAST of PI0017719 vs. ExPASy TrEMBL
Match: A0A5A7UQ77 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold186G002270 PE=4 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 5.8e-05
Identity = 39/87 (44.83%), Postives = 49/87 (56.32%), Query Frame = 0

Query: 1  MYNSNHVLANDLGASSKLRQPIRNQELDLYLESG---------KHFERDTSSSTNVYY-- 60
          M+NSNHV+     + SKL+        ++Y   G         KHF + T ++T VY   
Sbjct: 1  MHNSNHVMQ----SISKLQ-----HTKEVYQTPGTRSLPEKWVKHFGKGTPNTTKVYKLY 60

Query: 61 -VVGPTQHSHRLCRSEARPALTTASFV 76
           VVG TQHSHRLCRS ARPALTT S +
Sbjct: 61 DVVGSTQHSHRLCRSRARPALTTVSLL 78

BLAST of PI0017719 vs. ExPASy TrEMBL
Match: A0A5A7T7D6 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold808G00670 PE=4 SV=1)

HSP 1 Score: 55.5 bits (132), Expect = 2.9e-04
Identity = 36/78 (46.15%), Postives = 43/78 (55.13%), Query Frame = 0

Query: 1  MYNSNHVLANDLGASSKLRQPIRNQELDLYLESGKHFERDTSSSTNVYY---VVGPTQHS 60
          M NS HVL  D GAS+ L      +     L+  K F +  +   NVY    V+G  QHS
Sbjct: 1  MTNSKHVLPIDNGASADLGSLSDTENSISTLKVCKTFWKGYTQYNNVYKLYDVMGSVQHS 60

Query: 61 HRLCRSEARPALTTASFV 76
          HRLCRS ARP LTTAS +
Sbjct: 61 HRLCRSGARPVLTTASLL 78

BLAST of PI0017719 vs. NCBI nr
Match: KAA0054428.1 (hypothetical protein E6C27_scaffold24G001800 [Cucumis melo var. makuwa] >TYK14608.1 hypothetical protein E5676_scaffold552G001190 [Cucumis melo var. makuwa])

HSP 1 Score: 82.0 bits (201), Expect = 5.9e-12
Identity = 45/72 (62.50%), Postives = 49/72 (68.06%), Query Frame = 0

Query: 35  KHFERDTSSSTNVYY---VVGPTQHSHRLCRSEARPALTTASFVTEYTQCQQQNLTCVHT 94
           KHF R T S+TNVY    VVGP QHSH L RS AR AL  +  V EY Q QQ NLTCVH 
Sbjct: 54  KHFGRGTPSTTNVYKLYDVVGPVQHSHHLYRSGARSALNDSIVVMEYAQSQQWNLTCVHM 113

Query: 95  VPYSLRLNISVM 104
           +PYSL LN SV+
Sbjct: 114 LPYSLGLNTSVL 125

BLAST of PI0017719 vs. NCBI nr
Match: KAA0041133.1 (Retrovirus-related Pol polyprotein from transposon 17.6 [Cucumis melo var. makuwa])

HSP 1 Score: 61.2 bits (147), Expect = 1.1e-05
Identity = 32/44 (72.73%), Postives = 34/44 (77.27%), Query Frame = 0

Query: 35  KHFERDTSSSTNVYY---VVGPTQHSHRLCRSEARPALTTASFV 76
           KHF R T  +TNVY    VVGPTQHSHRLCRS ARPALTTAS +
Sbjct: 237 KHFGRGTLHTTNVYKLYDVVGPTQHSHRLCRSGARPALTTASLL 280

BLAST of PI0017719 vs. NCBI nr
Match: KAA0056456.1 (hypothetical protein E6C27_scaffold186G002270 [Cucumis melo var. makuwa])

HSP 1 Score: 57.8 bits (138), Expect = 1.2e-04
Identity = 39/87 (44.83%), Postives = 49/87 (56.32%), Query Frame = 0

Query: 1  MYNSNHVLANDLGASSKLRQPIRNQELDLYLESG---------KHFERDTSSSTNVYY-- 60
          M+NSNHV+     + SKL+        ++Y   G         KHF + T ++T VY   
Sbjct: 1  MHNSNHVMQ----SISKLQ-----HTKEVYQTPGTRSLPEKWVKHFGKGTPNTTKVYKLY 60

Query: 61 -VVGPTQHSHRLCRSEARPALTTASFV 76
           VVG TQHSHRLCRS ARPALTT S +
Sbjct: 61 DVVGSTQHSHRLCRSRARPALTTVSLL 78

BLAST of PI0017719 vs. NCBI nr
Match: TYK02475.1 (Retrovirus-related Pol polyprotein from transposon 17.6 [Cucumis melo var. makuwa])

HSP 1 Score: 57.8 bits (138), Expect = 1.2e-04
Identity = 30/44 (68.18%), Postives = 34/44 (77.27%), Query Frame = 0

Query: 35  KHFERDTSSSTNVYY---VVGPTQHSHRLCRSEARPALTTASFV 76
           KHF R T ++TNVY    VVGPTQ+SHRLCRS A PALTTAS +
Sbjct: 236 KHFGRGTLNTTNVYKLYDVVGPTQYSHRLCRSGAHPALTTASLL 279

BLAST of PI0017719 vs. NCBI nr
Match: KAA0037491.1 (hypothetical protein E6C27_scaffold277G00910 [Cucumis melo var. makuwa] >TYK01966.1 hypothetical protein E5676_scaffold808G00670 [Cucumis melo var. makuwa])

HSP 1 Score: 55.5 bits (132), Expect = 6.0e-04
Identity = 36/78 (46.15%), Postives = 43/78 (55.13%), Query Frame = 0

Query: 1  MYNSNHVLANDLGASSKLRQPIRNQELDLYLESGKHFERDTSSSTNVYY---VVGPTQHS 60
          M NS HVL  D GAS+ L      +     L+  K F +  +   NVY    V+G  QHS
Sbjct: 1  MTNSKHVLPIDNGASADLGSLSDTENSISTLKVCKTFWKGYTQYNNVYKLYDVMGSVQHS 60

Query: 61 HRLCRSEARPALTTASFV 76
          HRLCRS ARP LTTAS +
Sbjct: 61 HRLCRSGARPVLTTASLL 78

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5A7UHH62.9e-1262.50Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5A7TDA85.3e-0672.73Retrovirus-related Pol polyprotein from transposon 17.6 OS=Cucumis melo var. mak... [more]
A0A5D3BTH05.8e-0568.18Retrovirus-related Pol polyprotein from transposon 17.6 OS=Cucumis melo var. mak... [more]
A0A5A7UQ775.8e-0544.83Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A5A7T7D62.9e-0446.15Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
Match NameE-valueIdentityDescription
KAA0054428.15.9e-1262.50hypothetical protein E6C27_scaffold24G001800 [Cucumis melo var. makuwa] >TYK1460... [more]
KAA0041133.11.1e-0572.73Retrovirus-related Pol polyprotein from transposon 17.6 [Cucumis melo var. makuw... [more]
KAA0056456.11.2e-0444.83hypothetical protein E6C27_scaffold186G002270 [Cucumis melo var. makuwa][more]
TYK02475.11.2e-0468.18Retrovirus-related Pol polyprotein from transposon 17.6 [Cucumis melo var. makuw... [more]
KAA0037491.16.0e-0446.15hypothetical protein E6C27_scaffold277G00910 [Cucumis melo var. makuwa] >TYK0196... [more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
PI0017719.1PI0017719.1mRNA