PI0016974 (gene) Melon (PI 482460) v1

Overview
NamePI0016974
Typegene
OrganismCucumis metuliferus (Melon (PI 482460) v1)
DescriptionSmall nuclear ribonucleoprotein G
Locationchr08: 17641027 .. 17643384 (-)
RNA-Seq ExpressionPI0016974
SyntenyPI0016974
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TTCACATCTCTTTCTTTCGTGCTTCACCATGAGTAGGTCAGGACAGCCTCCGGATCTAAAAAAGTAAGTGTATCTTAACTTTTACCTTGTTCATTATGTTTTTGGTTCGATTATTTCAGCTATTTTCATTTGTTTCTCATTTTCTCCCTTTTTTTTTTTGCAGATATATGGACAAAAAGCTTCAGAGTAAGTTCTGTTTCTCACAAGCTTGTTTCTACATTTCGTTGTCCTTTTTATATATATATGTATATATTCTTGGCTCAGTTTAATTCTGTAGAAGCTGGAAATGTTTGTTTTCTTTTAATTTATGCCATATGATGCGATTTCGTTTGCTATTGATTTCTGTGAACTTTATCGCGCACTGAAACAAAACAATGCCTCTTTGTAATGTGTGGATCCTGAAGTTGAGTTTTACGAGTCTAGGATTTAGGGTTTAGTATTTACGTGTAACTGTTTGGAGCGAACGGATGAAGCATTGGGACTTTACGGTTAGATAATACAGTAATGAACGTTGATTCTCTCCACCTAATTTAGTGTTCATCTGCTATAGATTTGAACATGAGTATTTTAGTAGCATGTTGAAACTTTGTGCATTCAAATTGATGATGCTTCTAAATTGAATTTTGCAGTAAAACTCAATGCTAATCGCTTGGTAATTGGAACTCTTCGAGGCTTTGACCAATTTATGAATCTAGTGGTTGACAACACCGTGGAAGTGAATGGCAACGAGAAAACTGATATTGGCATGGTGGTGGGTCGCTGTTCTTTTCTTCTCTAATCATTTTTTTTTCCAAAATGGAATCGAAACTTTTCTTTGATATGTGATGAAAAGAGATTGATGCTCAAATTAGAAAGAGACAATAGTGTATACGAAAGAAGAACTAGAGCTAGGGGATCAGTAAAATACAACTATTAAAAGTAGGTACTGTATGACAAAATGGCACAATTCATTTGAAGACATTAAAGCATTCTAATTTATACAAATATCTTGAACGAACTTTGGACTGGGAACACCATGCTGAACCAAAACGATCCAACCATTCTGAAGGTTTTGTGTGTCAAATCATTTCATTCTCTATGTTTGCTTTAATTGATTAACACTGCAACGGTCCAAGAATTGATCACCGTTTTGGTTTTCATTTCAGGTGATTAGAGGAAATAGTGTGGTCACTGTTGAAGCACTTGAACCTGTAAACAGGATGCAGTGATTGCAAACGTGTTGGAAGTTGGTTCGATTCTTGCTTCTGATCTGTTTCATAGATCGAGTGAGTTAAACATTCGGAATTGTAGTATGTATAATTTTGGAATGTTATGGATTTAGATGGAATTCTTGTACTCCCATCATTCTGGACAGTAAGGATTATAATTTCAGCAATGGGGTTTCTGTATTATTCTGGGAAAGAGAGATTCATTGCATTAGGGGTAAGATTTTTCTCACAAAACCTTACATTCTCTCTTCCGCCACAGCACCAAAATCCAAATTATATTCGTTCCAAGTCTGAGTGCCACTGTATCATTTCGAAATATGCTCATTAATCTTTATATAGAGAATCCAAAAAAGATAGTTTCAACGGAGTTTGTTGCCAAATCGACCAATTTTATACATGTCTTCTCCTCCATTGTAAGTTTTGAAGATACTACCGTAACCTGCTAGTGATTGAAGTTCTTTGCTAGAAGTTCATATATTACATTGTAAAGGCGTATTGGGCTAAAGTTGATTATAATTCTTAGAGTGTAGTTTATATTTGGAAATGTGGATTGTTATGTTTTCGGTCGGTTCTTTTGCAATCATAATTGTAAAAAATGAACCATAGAAAGTTTTTCAGTGTTTAACAGTATTTAATAGTGGTTTTGAGTAATTTTGAGTATAAGAATTGTGTTTCTATTTATGAGAAATTTTGAGTATAAGAATTGTGATTTTAGAAGTGTTAGATTAGACATTGAATTGAATGTACTAAAGGGATCTTAATCATTTAAAATGTACCTCTAAATATGTTTTATTGTTCTAGTTCGGGAAGGAATCTCATCAATGTCTTTAAAAGCTTCTAATCCTAATATTTTGTTATCGAAGCAGGGATATACACCACCAGACATGATGCAATCTACAGTCTATTGGCATGAGTAGATCTATGGGTGTTAATCCATAGACTTTCACCAGAGTCAATTGTAATTTATATACATTATTCTCTTAATGAAACTCGTCTGTGGCTCTGTTCATGTTATTAGCCCTCTTATGAAACCATCACACATTCAGTAAAGTTCCAAGTTCGAGGACTAAGAGATACGCAACGAGGACTTCATTTACTCTCTAAACAAAATTAAAGAAGTCCATGATTCTACCAATAATCTTTACAAGAA

mRNA sequence

TTCACATCTCTTTCTTTCGTGCTTCACCATGAGTAGGTCAGGACAGCCTCCGGATCTAAAAAAATATATGGACAAAAAGCTTCAGATAAAACTCAATGCTAATCGCTTGGTAATTGGAACTCTTCGAGGCTTTGACCAATTTATGAATCTAGTGGTTGACAACACCGTGGAAGTGAATGGCAACGAGAAAACTGATATTGGCATGGTGGTGATTAGAGGAAATAGTGTGGTCACTGTTGAAGCACTTGAACCTGTAAACAGGATGCAGTGATTGCAAACGTGTTGGAAGTTGGTTCGATTCTTGCTTCTGATCTGTTTCATAGATCGAGTGAGTTAAACATTCGGAATTGTAGTATGTATAATTTTGGAATGTTATGGATTTAGATGGAATTCTTGTACTCCCATCATTCTGGACAGTAAGGATTATAATTTCAGCAATGGGGTTTCTGTATTATTCTGGGAAAGAGAGATTCATTGCATTAGGGGTAAGATTTTTCTCACAAAACCTTACATTCTCTCTTCCGCCACAGCACCAAAATCCAAATTATATTCGTTCCAAGTCTGAGTGCCACTGTATCATTTCGAAATATGCTCATTAATCTTTATATAGAGAATCCAAAAAAGATAGTTTCAACGGAGTTTGTTGCCAAATCGACCAATTTTATACATGTCTTCTCCTCCATTGTAAGTTTTGAAGATACTACCGTAACCTGCTAGTGATTGAAGTTCTTTGCTAGAAGTTCATATATTACATTGTAAAGGCGTATTGGGCTAAAGTTGATTATAATTCTTAGAGTGTAGTTTATATTTGGAAATGTGGATTGTTATGTTTTCGGTCGGTTCTTTTGCAATCATAATTGTAAAAAATGAACCATAGAAAGTTTTTCAGTGTTTAACAGTATTTAATAGTGGTTTTGAGTAATTTTGAGTATAAGAATTGTGTTTCTATTTATGAGAAATTTTGAGTATAAGAATTGTGATTTTAGAAGTGTTAGATTAGACATTGAATTGAATGTACTAAAGGGATCTTAATCATTTAAAATGTACCTCTAAATATGTTTTATTGTTCTAGTTCGGGAAGGAATCTCATCAATGTCTTTAAAAGCTTCTAATCCTAATATTTTGTTATCGAAGCAGGGATATACACCACCAGACATGATGCAATCTACAGTCTATTGGCATGAGTAGATCTATGGGTGTTAATCCATAGACTTTCACCAGAGTCAATTGTAATTTATATACATTATTCTCTTAATGAAACTCGTCTGTGGCTCTGTTCATGTTATTAGCCCTCTTATGAAACCATCACACATTCAGTAAAGTTCCAAGTTCGAGGACTAAGAGATACGCAACGAGGACTTCATTTACTCTCTAAACAAAATTAAAGAAGTCCATGATTCTACCAATAATCTTTACAAGAA

Coding sequence (CDS)

ATGAGTAGGTCAGGACAGCCTCCGGATCTAAAAAAATATATGGACAAAAAGCTTCAGATAAAACTCAATGCTAATCGCTTGGTAATTGGAACTCTTCGAGGCTTTGACCAATTTATGAATCTAGTGGTTGACAACACCGTGGAAGTGAATGGCAACGAGAAAACTGATATTGGCATGGTGGTGATTAGAGGAAATAGTGTGGTCACTGTTGAAGCACTTGAACCTGTAAACAGGATGCAGTGA

Protein sequence

MSRSGQPPDLKKYMDKKLQIKLNANRLVIGTLRGFDQFMNLVVDNTVEVNGNEKTDIGMVVIRGNSVVTVEALEPVNRMQ
Homology
[Close]
BLAST of PI0016974 vs. ExPASy Swiss-Prot
Match: O82221 (Probable small nuclear ribonucleoprotein G OS=Arabidopsis thaliana OX=3702 GN=At2g23930 PE=3 SV=1)

HSP 1 Score: 147.5 bits (371), Expect = 6.4e-35
Identity = 73/78 (93.59%), Postives = 76/78 (97.44%), Query Frame = 0 

Query: 1  MSRSGQPPDLKKYMDKKLQIKLNANRLVIGTLRGFDQFMNLVVDNTVEVNGNEKTDIGMV 60
          MSRSGQPPDLKKYMDKKLQIKLNANR+V GTLRGFDQFMNLVVDNTVEVNGN+KTDIGMV
Sbjct: 1  MSRSGQPPDLKKYMDKKLQIKLNANRMVTGTLRGFDQFMNLVVDNTVEVNGNDKTDIGMV 60

Query: 61 VIRGNSVVTVEALEPVNR 79
          VIRGNS+VTVEALEPV R
Sbjct: 61 VIRGNSIVTVEALEPVGR 78

[Close]
BLAST of PI0016974 vs. ExPASy Swiss-Prot
Match: P24715 (Probable small nuclear ribonucleoprotein G OS=Medicago sativa OX=3879 GN=C29 PE=3 SV=1)

HSP 1 Score: 134.8 bits (338), Expect = 4.3e-31
Identity = 67/76 (88.16%), Postives = 71/76 (93.42%), Query Frame = 0 

Query: 1  MSRSGQPPDLKKYMDKKLQIKLNANRLVIGTLRGFDQFMNLVVDNTVEVNGNEKTDIGMV 60
          MS SGQPP LKKYMDK+LQI L ANR+++GTLRGFDQFMNLVVDNTVEVNGNEK DIGMV
Sbjct: 1  MSTSGQPPALKKYMDKQLQINLKANRMIVGTLRGFDQFMNLVVDNTVEVNGNEKNDIGMV 60

Query: 61 VIRGNSVVTVEALEPV 77
          VIRGNSVVTVEALEPV
Sbjct: 61 VIRGNSVVTVEALEPV 76

[Close]
BLAST of PI0016974 vs. ExPASy Swiss-Prot
Match: Q9VXE0 (Probable small nuclear ribonucleoprotein G OS=Drosophila melanogaster OX=7227 GN=SNRPG PE=1 SV=1)

HSP 1 Score: 89.4 bits (220), Expect = 2.1e-17
Identity = 45/71 (63.38%), Postives = 56/71 (78.87%), Query Frame = 0 

Query: 7  PPDLKKYMDKKLQIKLNANRLVIGTLRGFDQFMNLVVDNTV-EVNGNEKTDIGMVVIRGN 66
          PP++KKYMDK++ +KLN  R V G LRGFD FMN+V+D+TV E   N K +IGMVVIRGN
Sbjct: 6  PPEVKKYMDKRMMLKLNGGRAVTGILRGFDPFMNVVLDDTVEECKDNTKNNIGMVVIRGN 65

Query: 67 SVVTVEALEPV 77
          S+V VEAL+ V
Sbjct: 66 SIVMVEALDRV 76

[Close]
BLAST of PI0016974 vs. ExPASy Swiss-Prot
Match: Q3ZBL0 (Small nuclear ribonucleoprotein G OS=Bos taurus OX=9913 GN=SNRPG PE=3 SV=1)

HSP 1 Score: 86.7 bits (213), Expect = 1.3e-16
Identity = 44/71 (61.97%), Postives = 55/71 (77.46%), Query Frame = 0 

Query: 7  PPDLKKYMDKKLQIKLNANRLVIGTLRGFDQFMNLVVDNTVEV-NGNEKTDIGMVVIRGN 66
          PP+LKK+MDKKL +KLN  R V G LRGFD FMNLV+D  VE+    ++ +IGMVVIRGN
Sbjct: 6  PPELKKFMDKKLSLKLNGGRHVQGILRGFDPFMNLVIDECVEMATSGQQNNIGMVVIRGN 65

Query: 67 SVVTVEALEPV 77
          S++ +EALE V
Sbjct: 66 SIIMLEALERV 76

[Close]
BLAST of PI0016974 vs. ExPASy Swiss-Prot
Match: P62308 (Small nuclear ribonucleoprotein G OS=Homo sapiens OX=9606 GN=SNRPG PE=1 SV=1)

HSP 1 Score: 86.7 bits (213), Expect = 1.3e-16
Identity = 44/71 (61.97%), Postives = 55/71 (77.46%), Query Frame = 0 

Query: 7  PPDLKKYMDKKLQIKLNANRLVIGTLRGFDQFMNLVVDNTVEV-NGNEKTDIGMVVIRGN 66
          PP+LKK+MDKKL +KLN  R V G LRGFD FMNLV+D  VE+    ++ +IGMVVIRGN
Sbjct: 6  PPELKKFMDKKLSLKLNGGRHVQGILRGFDPFMNLVIDECVEMATSGQQNNIGMVVIRGN 65

Query: 67 SVVTVEALEPV 77
          S++ +EALE V
Sbjct: 66 SIIMLEALERV 76

[Close]
BLAST of PI0016974 vs. ExPASy TrEMBL
Match: A0A5D3C6A2 (Small nuclear ribonucleoprotein G OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold202G001440 PE=3 SV=1)

HSP 1 Score: 157.5 bits (397), Expect = 2.3e-35
Identity = 80/80 (100.00%), Postives = 80/80 (100.00%), Query Frame = 0 

Query: 1  MSRSGQPPDLKKYMDKKLQIKLNANRLVIGTLRGFDQFMNLVVDNTVEVNGNEKTDIGMV 60
          MSRSGQPPDLKKYMDKKLQIKLNANRLVIGTLRGFDQFMNLVVDNTVEVNGNEKTDIGMV
Sbjct: 1  MSRSGQPPDLKKYMDKKLQIKLNANRLVIGTLRGFDQFMNLVVDNTVEVNGNEKTDIGMV 60

Query: 61 VIRGNSVVTVEALEPVNRMQ 81
          VIRGNSVVTVEALEPVNRMQ
Sbjct: 61 VIRGNSVVTVEALEPVNRMQ 80

[Close]
BLAST of PI0016974 vs. ExPASy TrEMBL
Match: A0A0A0KHH9 (Small nuclear ribonucleoprotein G OS=Cucumis sativus OX=3659 GN=Csa_6G452700 PE=3 SV=1)

HSP 1 Score: 157.5 bits (397), Expect = 2.3e-35
Identity = 80/80 (100.00%), Postives = 80/80 (100.00%), Query Frame = 0 

Query: 1  MSRSGQPPDLKKYMDKKLQIKLNANRLVIGTLRGFDQFMNLVVDNTVEVNGNEKTDIGMV 60
          MSRSGQPPDLKKYMDKKLQIKLNANRLVIGTLRGFDQFMNLVVDNTVEVNGNEKTDIGMV
Sbjct: 1  MSRSGQPPDLKKYMDKKLQIKLNANRLVIGTLRGFDQFMNLVVDNTVEVNGNEKTDIGMV 60

Query: 61 VIRGNSVVTVEALEPVNRMQ 81
          VIRGNSVVTVEALEPVNRMQ
Sbjct: 61 VIRGNSVVTVEALEPVNRMQ 80

[Close]
BLAST of PI0016974 vs. ExPASy TrEMBL
Match: A0A1S3CHS7 (Small nuclear ribonucleoprotein G OS=Cucumis melo OX=3656 GN=LOC103500906 PE=3 SV=1)

HSP 1 Score: 157.5 bits (397), Expect = 2.3e-35
Identity = 80/80 (100.00%), Postives = 80/80 (100.00%), Query Frame = 0 

Query: 1  MSRSGQPPDLKKYMDKKLQIKLNANRLVIGTLRGFDQFMNLVVDNTVEVNGNEKTDIGMV 60
          MSRSGQPPDLKKYMDKKLQIKLNANRLVIGTLRGFDQFMNLVVDNTVEVNGNEKTDIGMV
Sbjct: 1  MSRSGQPPDLKKYMDKKLQIKLNANRLVIGTLRGFDQFMNLVVDNTVEVNGNEKTDIGMV 60

Query: 61 VIRGNSVVTVEALEPVNRMQ 81
          VIRGNSVVTVEALEPVNRMQ
Sbjct: 61 VIRGNSVVTVEALEPVNRMQ 80

[Close]
BLAST of PI0016974 vs. ExPASy TrEMBL
Match: A0A6J1BSY9 (Small nuclear ribonucleoprotein G OS=Momordica charantia OX=3673 GN=LOC111005269 PE=3 SV=1)

HSP 1 Score: 155.2 bits (391), Expect = 1.1e-34
Identity = 79/80 (98.75%), Postives = 79/80 (98.75%), Query Frame = 0 

Query: 1  MSRSGQPPDLKKYMDKKLQIKLNANRLVIGTLRGFDQFMNLVVDNTVEVNGNEKTDIGMV 60
          MSRSGQPPDLKKYMDKKLQIKLNANRLVIGTLRGFDQFMNLVVDNTVEVNGNEKTDIGMV
Sbjct: 1  MSRSGQPPDLKKYMDKKLQIKLNANRLVIGTLRGFDQFMNLVVDNTVEVNGNEKTDIGMV 60

Query: 61 VIRGNSVVTVEALEPVNRMQ 81
          VIRGNSVVTVEALEPVNR Q
Sbjct: 61 VIRGNSVVTVEALEPVNRTQ 80

[Close]
BLAST of PI0016974 vs. ExPASy TrEMBL
Match: A0A1U8LJV9 (Small nuclear ribonucleoprotein G OS=Gossypium hirsutum OX=3635 GN=LOC107928220 PE=3 SV=1)

HSP 1 Score: 154.8 bits (390), Expect = 1.5e-34
Identity = 78/80 (97.50%), Postives = 79/80 (98.75%), Query Frame = 0 

Query: 1  MSRSGQPPDLKKYMDKKLQIKLNANRLVIGTLRGFDQFMNLVVDNTVEVNGNEKTDIGMV 60
          MSRSGQPPDLKKYMDKKLQIKLNANRLV+GTLRGFDQFMNLVVDNTVEVNGNEKTDIGMV
Sbjct: 1  MSRSGQPPDLKKYMDKKLQIKLNANRLVVGTLRGFDQFMNLVVDNTVEVNGNEKTDIGMV 60

Query: 61 VIRGNSVVTVEALEPVNRMQ 81
          VIRGNSVVTVEALEPV RMQ
Sbjct: 61 VIRGNSVVTVEALEPVGRMQ 80

[Close]
BLAST of PI0016974 vs. NCBI nr
Match: XP_004143329.1 (probable small nuclear ribonucleoprotein G [Cucumis sativus] >XP_008462580.1 PREDICTED: probable small nuclear ribonucleoprotein G [Cucumis melo] >XP_038881248.1 probable small nuclear ribonucleoprotein G [Benincasa hispida] >KAA0025250.1 putative small nuclear ribonucleoprotein G [Cucumis melo var. makuwa] >KGN48269.1 hypothetical protein Csa_004211 [Cucumis sativus] >TYK07417.1 putative small nuclear ribonucleoprotein G [Cucumis melo var. makuwa])

HSP 1 Score: 157.5 bits (397), Expect = 4.7e-35
Identity = 80/80 (100.00%), Postives = 80/80 (100.00%), Query Frame = 0 

Query: 1  MSRSGQPPDLKKYMDKKLQIKLNANRLVIGTLRGFDQFMNLVVDNTVEVNGNEKTDIGMV 60
          MSRSGQPPDLKKYMDKKLQIKLNANRLVIGTLRGFDQFMNLVVDNTVEVNGNEKTDIGMV
Sbjct: 1  MSRSGQPPDLKKYMDKKLQIKLNANRLVIGTLRGFDQFMNLVVDNTVEVNGNEKTDIGMV 60

Query: 61 VIRGNSVVTVEALEPVNRMQ 81
          VIRGNSVVTVEALEPVNRMQ
Sbjct: 61 VIRGNSVVTVEALEPVNRMQ 80

[Close]
BLAST of PI0016974 vs. NCBI nr
Match: XP_023517274.1 (probable small nuclear ribonucleoprotein G [Cucurbita pepo subsp. pepo])

HSP 1 Score: 156.4 bits (394), Expect = 1.0e-34
Identity = 78/80 (97.50%), Postives = 80/80 (100.00%), Query Frame = 0 

Query: 1  MSRSGQPPDLKKYMDKKLQIKLNANRLVIGTLRGFDQFMNLVVDNTVEVNGNEKTDIGMV 60
          MSRSGQPPDLKKYMDKKLQIK+NANRLV+GTLRGFDQFMNLVVDNTVEVNGNEKTDIGMV
Sbjct: 1  MSRSGQPPDLKKYMDKKLQIKMNANRLVVGTLRGFDQFMNLVVDNTVEVNGNEKTDIGMV 60

Query: 61 VIRGNSVVTVEALEPVNRMQ 81
          VIRGNSVVTVEALEPVNRMQ
Sbjct: 61 VIRGNSVVTVEALEPVNRMQ 80

[Close]
BLAST of PI0016974 vs. NCBI nr
Match: XP_022132404.1 (probable small nuclear ribonucleoprotein G [Momordica charantia])

HSP 1 Score: 155.2 bits (391), Expect = 2.3e-34
Identity = 79/80 (98.75%), Postives = 79/80 (98.75%), Query Frame = 0 

Query: 1  MSRSGQPPDLKKYMDKKLQIKLNANRLVIGTLRGFDQFMNLVVDNTVEVNGNEKTDIGMV 60
          MSRSGQPPDLKKYMDKKLQIKLNANRLVIGTLRGFDQFMNLVVDNTVEVNGNEKTDIGMV
Sbjct: 1  MSRSGQPPDLKKYMDKKLQIKLNANRLVIGTLRGFDQFMNLVVDNTVEVNGNEKTDIGMV 60

Query: 61 VIRGNSVVTVEALEPVNRMQ 81
          VIRGNSVVTVEALEPVNR Q
Sbjct: 61 VIRGNSVVTVEALEPVNRTQ 80

[Close]
BLAST of PI0016974 vs. NCBI nr
Match: KAG6595179.1 (putative small nuclear ribonucleoprotein G, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 154.8 bits (390), Expect = 3.1e-34
Identity = 77/80 (96.25%), Postives = 80/80 (100.00%), Query Frame = 0 

Query: 1   MSRSGQPPDLKKYMDKKLQIKLNANRLVIGTLRGFDQFMNLVVDNTVEVNGNEKTDIGMV 60
           MSRSGQPPDLKKYMDKKLQIK+NANRLV+GTLRGFDQFMNLVVDNTVEVNGNEKT+IGMV
Sbjct: 41  MSRSGQPPDLKKYMDKKLQIKMNANRLVVGTLRGFDQFMNLVVDNTVEVNGNEKTEIGMV 100

Query: 61  VIRGNSVVTVEALEPVNRMQ 81
           VIRGNSVVTVEALEPVNRMQ
Sbjct: 101 VIRGNSVVTVEALEPVNRMQ 120

[Close]
BLAST of PI0016974 vs. NCBI nr
Match: XP_012468163.1 (PREDICTED: probable small nuclear ribonucleoprotein G [Gossypium raimondii] >XP_016711763.1 probable small nuclear ribonucleoprotein G [Gossypium hirsutum] >XP_016714896.1 probable small nuclear ribonucleoprotein G [Gossypium hirsutum] >XP_017622516.1 PREDICTED: probable small nuclear ribonucleoprotein G [Gossypium arboreum] >KAB2046411.1 hypothetical protein ES319_D01G232600v1 [Gossypium barbadense] >KAG8504063.1 hypothetical protein CXB51_002398 [Gossypium anomalum] >TYG84423.1 hypothetical protein ES288_D01G249100v1 [Gossypium darwinii] >TYH89319.1 hypothetical protein ES332_D01G251700v1 [Gossypium tomentosum] >TYI98777.1 hypothetical protein E1A91_D01G240600v1 [Gossypium mustelinum])

HSP 1 Score: 154.8 bits (390), Expect = 3.1e-34
Identity = 78/80 (97.50%), Postives = 79/80 (98.75%), Query Frame = 0 

Query: 1  MSRSGQPPDLKKYMDKKLQIKLNANRLVIGTLRGFDQFMNLVVDNTVEVNGNEKTDIGMV 60
          MSRSGQPPDLKKYMDKKLQIKLNANRLV+GTLRGFDQFMNLVVDNTVEVNGNEKTDIGMV
Sbjct: 1  MSRSGQPPDLKKYMDKKLQIKLNANRLVVGTLRGFDQFMNLVVDNTVEVNGNEKTDIGMV 60

Query: 61 VIRGNSVVTVEALEPVNRMQ 81
          VIRGNSVVTVEALEPV RMQ
Sbjct: 61 VIRGNSVVTVEALEPVGRMQ 80

[Close]
BLAST of PI0016974 vs. TAIR 10
Match: AT2G23930.1 (probable small nuclear ribonucleoprotein G )

HSP 1 Score: 147.5 bits (371), Expect = 4.5e-36
Identity = 73/78 (93.59%), Postives = 76/78 (97.44%), Query Frame = 0 

Query: 1  MSRSGQPPDLKKYMDKKLQIKLNANRLVIGTLRGFDQFMNLVVDNTVEVNGNEKTDIGMV 60
          MSRSGQPPDLKKYMDKKLQIKLNANR+V GTLRGFDQFMNLVVDNTVEVNGN+KTDIGMV
Sbjct: 1  MSRSGQPPDLKKYMDKKLQIKLNANRMVTGTLRGFDQFMNLVVDNTVEVNGNDKTDIGMV 60

Query: 61 VIRGNSVVTVEALEPVNR 79
          VIRGNS+VTVEALEPV R
Sbjct: 61 VIRGNSIVTVEALEPVGR 78

[Close]
BLAST of PI0016974 vs. TAIR 10
Match: AT3G11500.1 (Small nuclear ribonucleoprotein family protein )

HSP 1 Score: 147.1 bits (370), Expect = 5.9e-36
Identity = 72/78 (92.31%), Postives = 77/78 (98.72%), Query Frame = 0 

Query: 1  MSRSGQPPDLKKYMDKKLQIKLNANRLVIGTLRGFDQFMNLVVDNTVEVNGNEKTDIGMV 60
          MSRSGQPPDLKKYMDKKLQIKLNANR+V+GTLRGFDQFMNLVVDNTVEVNG++KTDIGMV
Sbjct: 1  MSRSGQPPDLKKYMDKKLQIKLNANRMVVGTLRGFDQFMNLVVDNTVEVNGDDKTDIGMV 60

Query: 61 VIRGNSVVTVEALEPVNR 79
          VIRGNS+VTVEALEPV R
Sbjct: 61 VIRGNSIVTVEALEPVGR 78

[Close]
BLAST of PI0016974 vs. TAIR 10
Match: AT2G23930.2 (probable small nuclear ribonucleoprotein G )

HSP 1 Score: 120.6 bits (301), Expect = 5.9e-28
Identity = 60/65 (92.31%), Postives = 63/65 (96.92%), Query Frame = 0 

Query: 14 MDKKLQIKLNANRLVIGTLRGFDQFMNLVVDNTVEVNGNEKTDIGMVVIRGNSVVTVEAL 73
          MDKKLQIKLNANR+V GTLRGFDQFMNLVVDNTVEVNGN+KTDIGMVVIRGNS+VTVEAL
Sbjct: 1  MDKKLQIKLNANRMVTGTLRGFDQFMNLVVDNTVEVNGNDKTDIGMVVIRGNSIVTVEAL 60

Query: 74 EPVNR 79
          EPV R
Sbjct: 61 EPVGR 65

[Close]
BLAST of PI0016974 vs. TAIR 10
Match: AT2G03870.2 (Small nuclear ribonucleoprotein family protein )

HSP 1 Score: 53.5 bits (127), Expect = 8.9e-08
Identity = 28/71 (39.44%), Postives = 43/71 (60.56%), Query Frame = 0 

Query: 9  DLKKYMDKKLQIKLNANRLVIGTLRGFDQFMNLVVDNTVEV---------NGNEKTDIGM 68
          DL K++DK +Q+KL   R V GTL+G+DQ +NLV+D  VE            ++   +G+
Sbjct: 10 DLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFVRDHDDPLKTTDQTRRLGL 69

Query: 69 VVIRGNSVVTV 71
          +V RG +V+ V
Sbjct: 70 IVCRGTAVMLV 80

[Close]
BLAST of PI0016974 vs. TAIR 10
Match: AT2G03870.1 (Small nuclear ribonucleoprotein family protein )

HSP 1 Score: 53.5 bits (127), Expect = 8.9e-08
Identity = 28/71 (39.44%), Postives = 43/71 (60.56%), Query Frame = 0 

Query: 9  DLKKYMDKKLQIKLNANRLVIGTLRGFDQFMNLVVDNTVEV---------NGNEKTDIGM 68
          DL K++DK +Q+KL   R V GTL+G+DQ +NLV+D  VE            ++   +G+
Sbjct: 10 DLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFVRDHDDPLKTTDQTRRLGL 69

Query: 69 VVIRGNSVVTV 71
          +V RG +V+ V
Sbjct: 70 IVCRGTAVMLV 80

The following BLAST results are available for this feature:
BLAST of PI0016974 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
O822216.4e-3593.59Probable small nuclear ribonucleoprotein G OS=Arabidopsis thaliana OX=3702 GN=At... [more]
P247154.3e-3188.16Probable small nuclear ribonucleoprotein G OS=Medicago sativa OX=3879 GN=C29 PE=... [more]
Q9VXE02.1e-1763.38Probable small nuclear ribonucleoprotein G OS=Drosophila melanogaster OX=7227 GN... [more]
Q3ZBL01.3e-1661.97Small nuclear ribonucleoprotein G OS=Bos taurus OX=9913 GN=SNRPG PE=3 SV=1[more]
P623081.3e-1661.97Small nuclear ribonucleoprotein G OS=Homo sapiens OX=9606 GN=SNRPG PE=1 SV=1[more]
BLAST of PI0016974 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5D3C6A22.3e-35100.00Small nuclear ribonucleoprotein G OS=Cucumis melo var. makuwa OX=1194695 GN=E567... [more]
A0A0A0KHH92.3e-35100.00Small nuclear ribonucleoprotein G OS=Cucumis sativus OX=3659 GN=Csa_6G452700 PE=... [more]
A0A1S3CHS72.3e-35100.00Small nuclear ribonucleoprotein G OS=Cucumis melo OX=3656 GN=LOC103500906 PE=3 S... [more]
A0A6J1BSY91.1e-3498.75Small nuclear ribonucleoprotein G OS=Momordica charantia OX=3673 GN=LOC111005269... [more]
A0A1U8LJV91.5e-3497.50Small nuclear ribonucleoprotein G OS=Gossypium hirsutum OX=3635 GN=LOC107928220 ... [more]
BLAST of PI0016974 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_004143329.14.7e-35100.00probable small nuclear ribonucleoprotein G [Cucumis sativus] >XP_008462580.1 PRE... [more]
XP_023517274.11.0e-3497.50probable small nuclear ribonucleoprotein G [Cucurbita pepo subsp. pepo][more]
XP_022132404.12.3e-3498.75probable small nuclear ribonucleoprotein G [Momordica charantia][more]
KAG6595179.13.1e-3496.25putative small nuclear ribonucleoprotein G, partial [Cucurbita argyrosperma subs... [more]
XP_012468163.13.1e-3497.50PREDICTED: probable small nuclear ribonucleoprotein G [Gossypium raimondii] >XP_... [more]
BLAST of PI0016974 vs. TAIR 10
Match NameE-valueIdentityDescription
AT2G23930.14.5e-3693.59probable small nuclear ribonucleoprotein G [more]
AT3G11500.15.9e-3692.31Small nuclear ribonucleoprotein family protein [more]
AT2G23930.25.9e-2892.31probable small nuclear ribonucleoprotein G [more]
AT2G03870.28.9e-0839.44Small nuclear ribonucleoprotein family protein [more]
AT2G03870.18.9e-0839.44Small nuclear ribonucleoprotein family protein [more]
InterPro
Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001163LSM domain, eukaryotic/archaea-typeSMARTSM00651Sm3coord: 8..72
e-value: 2.4E-23
score: 93.6
IPR001163LSM domain, eukaryotic/archaea-typePFAMPF01423LSMcoord: 9..71
e-value: 7.9E-22
score: 76.7
NoneNo IPR availableGENE3D2.30.30.100coord: 1..79
e-value: 8.5E-25
score: 88.7
NoneNo IPR availablePIRSFPIRSF037188Lsm7coord: 5..80
e-value: 1.1E-18
score: 65.1
NoneNo IPR availablePANTHERPTHR10553:SF29SMALL NUCLEAR RIBONUCLEOPROTEIN Gcoord: 1..78
IPR044641Sm-like protein Lsm7/SmGPANTHERPTHR10553SMALL NUCLEAR RIBONUCLEOPROTEINcoord: 1..78
IPR034098Small nuclear ribonucleoprotein GCDDcd01719Sm_Gcoord: 6..74
e-value: 2.323E-39
score: 122.625
IPR010920LSM domain superfamilySUPERFAMILY50182Sm-like ribonucleoproteinscoord: 9..77

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
PI0016974.1PI0016974.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0000387 spliceosomal snRNP assembly
cellular_component GO:0071013 catalytic step 2 spliceosome
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0043186 P granule
cellular_component GO:0071011 precatalytic spliceosome
cellular_component GO:0034719 SMN-Sm protein complex
cellular_component GO:0097526 spliceosomal tri-snRNP complex
cellular_component GO:0005689 U12-type spliceosomal complex
cellular_component GO:0005685 U1 snRNP
cellular_component GO:0005686 U2 snRNP
cellular_component GO:0071004 U2-type prespliceosome
cellular_component GO:0005687 U4 snRNP
cellular_component GO:0005682 U5 snRNP
cellular_component GO:0005681 spliceosomal complex
molecular_function GO:0003723 RNA binding