PI0016875 (gene) Melon (PI 482460) v1

Overview
NamePI0016875
Typegene
OrganismCucumis metuliferus (Melon (PI 482460) v1)
Description50S ribosomal protein L2, chloroplastic
Locationtig00003741: 60050 .. 61539 (-)
RNA-Seq ExpressionPI0016875
SyntenyPI0016875
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCGATACATTTATACAAAACTTCTACCCCGAGCACACGCAATGGAGCCGTAGACAGTCAAGTAAAATCCAATCCACGAAATAATTTGATCTATGGACAGCATCGTTGTGGTAAAGGTCGTAATGCCAGAGGAATCATTACCGCAGGGCATAGAGGGGGAGGTCATAAGCGTCTATACCGTAAAATCGATTTTCGACGGAATGAAAAAGACATATATGGTAGAATCGTAACCATAGAATACGACCCTAATCGAAATGCATACATTTGTCTCATACACTATGGGGATGGTGAGAAAAGATATATTTTACATCCCAGAGGGGCTATAATTGGAGATACCATTGTTTCTGGTACAGAAGTTCCTATAAAAATGGGAAATGCCCTACCTTTGAGTGCGGTTTGAACTATTGATTTACGTAATTGGAAGTAACCAATTAGGTTTACGACGAAACCTAGAAATCGATCACTGATCCAATTTGAGTACCTCCACAGGATAGACCTCAACAGAAAACTGAAGAGTAACGGCAGCAAGTGATTGAGTTCAGTAGTTCCTCATATAAAATTATTGACTCTCGAAATATAGTAATATGGAGAAGACTAAATTGTTTCAAGCACCGACAGAACCAGAAGCGTCCCTTGTTTCAAAGAGAGGAGGACGGGTTATTCACATTTCATTTGATGGTCAGAGGCAAATTGAAAGCTAAGCAGTGGTAATTCTAAGGATTCCCGAGGGGAAAAATAGAGATGTCTCCTACGTTACCCGTAATATGTGGAAGTATCGACGTAATTTCATAGAGTCATTCGGTCTGAATGCTACATGAAGAACATAAGCCAGATGAAGGAACGGGAAGACCTAGGATGTAGAAGATCATAACATGAGTGATTCGGCAGATTTGGATTCCTATATATCCACTCATGTGGTACTTCATTGTACGATATATATAAGATCCAGATGTATAGATATCATCATCTACATCCAGAAAGCCGTATGCTTTGGAAGAAGCTTGTACAGTTTGGGAAGGGGTTTTGATTGATCAAAAAGAAGAATCTACTTCAACCGATATGCCCTTAGGCACGGCCATACATAACATAGAAATCACACTTGGGAAGGGGGGACAATTAGCTAGAGCAGCAGGTGCTGTAGCGAAACTGATTGCAAAAGAGGGGAAATCGGCCACATTAAAATTACCTTCTGGGGAGGTCCGTTTGATATCCAAAAATTGCTCAGCAACAGTCGGACAAGTGGGGAATGCTGGGGTAAACCAGAAAAGTTTGGGTAGAGCCGGATCTAAATGTTGGCTAGGTAAGCGTCCTGTAGTAAGAGGAGTAGTTATGAACCCTGTAGACCATCCCCATGGGGGTGGTGAAGGGAGGGCCCCAATTGGTAGAAAAAAACCCGCAACCCCTTGGGGTTATCCTGCACTTGGAAGAAGAAGTAGAAAAAGGAATAAATATAGTGATAATTTGATTCTCCGTCGCCGTAGTAAATAA

mRNA sequence

ATGGCGATACATTTATACAAAACTTCTACCCCGAGCACACGCAATGGAGCCGTAGACAGTCAAGTAAAATCCAATCCACGAAATAATTTGATCTATGGACAGCATCGTTGTGGTAAAGGTCGTAATGCCAGAGGAATCATTACCGCAGGGCATAGAGGGGGAGGTCATAAGCGTCTATACCGTAAAATCGATTTTCGACGGAATGAAAAAGACATATATGGTAGAATCGTAACCATAGAATACGACCCTAATCGAAATGCATACATTTGTCTCATACACTATGGGGATGGTGAGAAAAGATATATTTTACATCCCAGAGGGGCTATAATTGGAGATACCATTGTTTCTGGTACAGAAGTTCCTATAAAAATGGGAAATGCCCTACCTTTGAAATCTACTTCAACCGATATGCCCTTAGGCACGGCCATACATAACATAGAAATCACACTTGGGAAGGGGGGACAATTAGCTAGAGCAGCAGGTGCTGTAGCGAAACTGATTGCAAAAGAGGGGAAATCGGCCACATTAAAATTACCTTCTGGGGAGGTCCGTTTGATATCCAAAAATTGCTCAGCAACAGTCGGACAAGTGGGGAATGCTGGGGTAAACCAGAAAAGTTTGGGTAGAGCCGGATCTAAATGTTGGCTAGGTAAGCGTCCTGTAGTAAGAGGAGTAGTTATGAACCCTGTAGACCATCCCCATGGGGGTGGTGAAGGGAGGGCCCCAATTGGTAGAAAAAAACCCGCAACCCCTTGGGGTTATCCTGCACTTGGAAGAAGAAGTAGAAAAAGGAATAAATATAGTGATAATTTGATTCTCCGTCGCCGTAGTAAATAA

Coding sequence (CDS)

ATGGCGATACATTTATACAAAACTTCTACCCCGAGCACACGCAATGGAGCCGTAGACAGTCAAGTAAAATCCAATCCACGAAATAATTTGATCTATGGACAGCATCGTTGTGGTAAAGGTCGTAATGCCAGAGGAATCATTACCGCAGGGCATAGAGGGGGAGGTCATAAGCGTCTATACCGTAAAATCGATTTTCGACGGAATGAAAAAGACATATATGGTAGAATCGTAACCATAGAATACGACCCTAATCGAAATGCATACATTTGTCTCATACACTATGGGGATGGTGAGAAAAGATATATTTTACATCCCAGAGGGGCTATAATTGGAGATACCATTGTTTCTGGTACAGAAGTTCCTATAAAAATGGGAAATGCCCTACCTTTGAAATCTACTTCAACCGATATGCCCTTAGGCACGGCCATACATAACATAGAAATCACACTTGGGAAGGGGGGACAATTAGCTAGAGCAGCAGGTGCTGTAGCGAAACTGATTGCAAAAGAGGGGAAATCGGCCACATTAAAATTACCTTCTGGGGAGGTCCGTTTGATATCCAAAAATTGCTCAGCAACAGTCGGACAAGTGGGGAATGCTGGGGTAAACCAGAAAAGTTTGGGTAGAGCCGGATCTAAATGTTGGCTAGGTAAGCGTCCTGTAGTAAGAGGAGTAGTTATGAACCCTGTAGACCATCCCCATGGGGGTGGTGAAGGGAGGGCCCCAATTGGTAGAAAAAAACCCGCAACCCCTTGGGGTTATCCTGCACTTGGAAGAAGAAGTAGAAAAAGGAATAAATATAGTGATAATTTGATTCTCCGTCGCCGTAGTAAATAA

Protein sequence

MAIHLYKTSTPSTRNGAVDSQVKSNPRNNLIYGQHRCGKGRNARGIITAGHRGGGHKRLYRKIDFRRNEKDIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIKMGNALPLKSTSTDMPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGNAGVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGGGEGRAPIGRKKPATPWGYPALGRRSRKRNKYSDNLILRRRSK
Homology
The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Q4VZK52.8e-15498.5650S ribosomal protein L2, chloroplastic OS=Cucumis sativus OX=3659 GN=rpl2-A PE=... [more]
Q09MB21.2e-15297.1250S ribosomal protein L2, chloroplastic OS=Citrus sinensis OX=2711 GN=rpl2-A PE=... [more]
Q0ZIX72.0e-15297.4850S ribosomal protein L2, chloroplastic OS=Vitis vinifera OX=29760 GN=rpl2-A PE=... [more]
Q2L9444.5e-15297.1250S ribosomal protein L2, chloroplastic OS=Gossypium hirsutum OX=3635 GN=rpl2-A ... [more]
B1A9765.8e-15297.4850S ribosomal protein L2, chloroplastic OS=Carica papaya OX=3649 GN=rpl2-A PE=3 ... [more]
Match NameE-valueIdentityDescription
A0A513X1K11.5e-155100.0050S ribosomal protein L2, chloroplastic OS=Cucumis sativus OX=3659 GN=rpl2 PE=3 ... [more]
A0A249RZD65.5e-15396.8550S ribosomal protein L2, chloroplastic OS=Cucumis melo var. cantalupensis OX=36... [more]
A0A286NG405.5e-15396.8550S ribosomal protein L2, chloroplastic OS=Cucumis melo var. flexuosus OX=112079... [more]
A0A249RY565.5e-15396.8550S ribosomal protein L2, chloroplastic OS=Cucumis melo subsp. agrestis OX=21761... [more]
A0A286SB865.5e-15396.8550S ribosomal protein L2, chloroplastic OS=Cucumis sativus var. hardwickii OX=31... [more]
Match NameE-valueIdentityDescription
QDH07784.13.2e-155100.00ribosomal protein L2 [Cucumis sativus] >QDH07805.1 ribosomal protein L2 [Cucumis... [more]
QTC32975.15.1e-15398.56ribosomal protein L2 [Hibiscus cannabinus][more]
YP_009945397.16.6e-15396.86ribosomal protein L2 [Sechium edule] >YP_009945456.1 ribosomal protein L2 [Sechi... [more]
YP_009420859.11.1e-15296.85ribosomal protein L2 [Citrullus colocynthis] >YP_009431621.1 ribosomal protein L... [more]
YP_009326031.11.9e-15296.52ribosomal protein L2 [Citrullus lanatus] >YP_009348073.1 ribosomal protein L2 [C... [more]
Match NameE-valueIdentityDescription
ATCG00830.11.1e-14894.60ribosomal protein L2 [more]
ATCG01310.11.1e-14894.60ribosomal protein L2 [more]
AT2G44065.13.9e-2646.04Ribosomal protein L2 family [more]
AT2G44065.23.9e-2646.04Ribosomal protein L2 family [more]
AT3G51190.11.5e-2234.32Ribosomal protein L2 family [more]
InterPro
Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR022669Ribosomal protein L2, C-terminalSMARTSM01382Ribosomal_L2_C_2coord: 122..255
e-value: 6.6E-77
score: 271.5
IPR022669Ribosomal protein L2, C-terminalPFAMPF03947Ribosomal_L2_Ccoord: 123..253
e-value: 9.2E-51
score: 171.2
IPR002171Ribosomal protein L2SMARTSM01383Ribosomal_L2_2coord: 40..116
e-value: 1.6E-35
score: 134.0
IPR002171Ribosomal protein L2PIRSFPIRSF002158RPL2p_RPL2a_RPL8e_RPL2ocoord: 13..278
e-value: 1.2E-82
score: 275.2
IPR002171Ribosomal protein L2PANTHERPTHR13691RIBOSOMAL PROTEIN L2coord: 3..276
IPR014726Ribosomal protein L2, domain 3GENE3D4.10.950.10Ribosomal protein L2, domain 3coord: 199..277
e-value: 2.2E-34
score: 119.4
NoneNo IPR availableGENE3D2.40.50.140coord: 1..112
e-value: 2.0E-39
score: 136.3
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 262..278
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..25
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 228..278
NoneNo IPR availablePANTHERPTHR13691:SF5150S RIBOSOMAL PROTEIN L2, CHLOROPLASTICcoord: 3..276
IPR005880Ribosomal protein L2, bacterial/organellar-typeTIGRFAMTIGR01171TIGR01171coord: 3..277
e-value: 1.3E-111
score: 370.4
IPR005880Ribosomal protein L2, bacterial/organellar-typeHAMAPMF_01320_BRibosomal_L2_Bcoord: 1..277
score: 43.922295
IPR022666Ribosomal Proteins L2, RNA binding domainPFAMPF00181Ribosomal_L2coord: 40..116
e-value: 1.2E-29
score: 102.0
IPR014722Ribosomal protein L2, domain 2GENE3D2.30.30.30coord: 116..198
e-value: 5.1E-36
score: 124.5
IPR022671Ribosomal protein L2, conserved sitePROSITEPS00467RIBOSOMAL_L2coord: 220..231
IPR008991Translation protein SH3-like domain superfamilySUPERFAMILY50104Translation proteins SH3-like domaincoord: 125..275
IPR012340Nucleic acid-binding, OB-foldSUPERFAMILY50249Nucleic acid-binding proteinscoord: 2..123

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
PI0016875.1PI0016875.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006412 translation
cellular_component GO:0009507 chloroplast
cellular_component GO:0015934 large ribosomal subunit
cellular_component GO:0005840 ribosome
molecular_function GO:0019843 rRNA binding
molecular_function GO:0003735 structural constituent of ribosome
molecular_function GO:0016740 transferase activity
molecular_function GO:0003723 RNA binding