PI0016229 (gene) Melon (PI 482460) v1

Overview


Name	PI0016229
Type	gene
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	Retrotransposon protein
Location	chr08: 7021208 .. 7021824 (+)
RNA-Seq Expression	PI0016229
Synteny	PI0016229

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCAGAGAAGCTGCCAGGAAGTAACATCCAGGGTTCCCTGACTATTGACTATCTGATAAAGACCTTCAAGAGAACATTCCAGGCCATAGCAAAAATGCGCGGCCCATCATGCACTGGGTTTGGTTGGAACGATGAAGTAAAGTGCATCATCACTGAGAATGATTTGTTCGACAATTGGGTGAAGGTAGGATATTCATTATGTCAACCGTTATTCGTTTATAGTAGTAAAAAAACTGACAATTTATTTGAAAATTTCCACAGAGCCATCCTGCTGCCAAGGGCTTCCTAAACAAATCGTTTTCCTATTACGACCAGCTGTTCTACGTGTTTGGGAAAGATTGCGCTACGGAAGCATGCGCGGAGACGTTCGCCATTGTGGAGTCAAATGTGCCTAGAGAATACGAAGGATTTTTCGCTGACGATGTGAACGATATGGAGATACCTATGATGTACAGCCAGCGACTAGACATGTCGCCTGACGATATCATGGGCACACGACCCGGTCGCTCGAGTAAGGGTAGGACTGGTTCAAGCAGATCAAAAAGGAAACGGGGAGGCCAGATGGTAGAGACTGTGGAAATCATTTGCAATGCAATGGACTTTGTGAATGACTAG

mRNA sequence

ATGGCAGAGAAGCTGCCAGGAAGTAACATCCAGGGTTCCCTGACTATTGACTATCTGATAAAGACCTTCAAGAGAACATTCCAGGCCATAGCAAAAATGCGCGGCCCATCATGCACTGGGTTTGGTTGGAACGATGAAGTAAAGTGCATCATCACTGAGAATGATTTGTTCGACAATTGGGTGAAGAGCCATCCTGCTGCCAAGGGCTTCCTAAACAAATCGTTTTCCTATTACGACCAGCTGTTCTACGTGTTTGGGAAAGATTGCGCTACGGAAGCATGCGCGGAGACGTTCGCCATTGTGGAGTCAAATGTGCCTAGAGAATACGAAGGATTTTTCGCTGACGATGTGAACGATATGGAGATACCTATGATGTACAGCCAGCGACTAGACATGTCGCCTGACGATATCATGGGCACACGACCCGGTCGCTCGAGTAAGGGTAGGACTGGTTCAAGCAGATCAAAAAGGAAACGGGGAGGCCAGATGGTAGAGACTGTGGAAATCATTTGCAATGCAATGGACTTTGTGAATGACTAG

Coding sequence (CDS)

ATGGCAGAGAAGCTGCCAGGAAGTAACATCCAGGGTTCCCTGACTATTGACTATCTGATAAAGACCTTCAAGAGAACATTCCAGGCCATAGCAAAAATGCGCGGCCCATCATGCACTGGGTTTGGTTGGAACGATGAAGTAAAGTGCATCATCACTGAGAATGATTTGTTCGACAATTGGGTGAAGAGCCATCCTGCTGCCAAGGGCTTCCTAAACAAATCGTTTTCCTATTACGACCAGCTGTTCTACGTGTTTGGGAAAGATTGCGCTACGGAAGCATGCGCGGAGACGTTCGCCATTGTGGAGTCAAATGTGCCTAGAGAATACGAAGGATTTTTCGCTGACGATGTGAACGATATGGAGATACCTATGATGTACAGCCAGCGACTAGACATGTCGCCTGACGATATCATGGGCACACGACCCGGTCGCTCGAGTAAGGGTAGGACTGGTTCAAGCAGATCAAAAAGGAAACGGGGAGGCCAGATGGTAGAGACTGTGGAAATCATTTGCAATGCAATGGACTTTGTGAATGACTAG

Protein sequence

MAEKLPGSNIQGSLTIDYLIKTFKRTFQAIAKMRGPSCTGFGWNDEVKCIITENDLFDNWVKSHPAAKGFLNKSFSYYDQLFYVFGKDCATEACAETFAIVESNVPREYEGFFADDVNDMEIPMMYSQRLDMSPDDIMGTRPGRSSKGRTGSSRSKRKRGGQMVETVEIICNAMDFVND

Homology

[Close]

BLAST of PI0016229 vs. ExPASy TrEMBL
Match: A0A5D3D831 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold242G001060 PE=4 SV=1)

HSP 1 Score: 214.9 bits (546), Expect = 2.7e-52
Identity = 109/178 (61.24%), Postives = 130/178 (73.03%), Query Frame = 0


Query: 1   MAEKLPGSNIQGSLTIDYLIKTFKRTFQAIAKMRGPSCTGFGWNDEVKCIITENDLFDNW 60
           MA+KLPG  ++ +  IDY IKT KRTFQAIA+MRGP+C+GFGWN+E KCII E +LFDNW
Sbjct: 15  MAKKLPGCCVRATTVIDYRIKTLKRTFQAIAEMRGPACSGFGWNNEEKCIIMEKELFDNW 74

Query: 61  VKSHPAAKGFLNKSFSYYDQLFYVFGKDCATEACAETFAIVESNVPREYEGFFADDVNDM 120
           V+SHPAAKG LNK FSYYD+L YVF  D AT+  AETF  + SN P  YEGF   D N+ 
Sbjct: 75  VRSHPAAKGLLNKPFSYYDELTYVFDSDRATDRFAETFVDMGSNEPDGYEGFDMADGNE- 134

Query: 121 EIPMMYSQRLDMSPDDIMGTRPGRSSKGRTGSSRSKRKRGGQMVETVEIICNAMDFVN 179
           E   +YSQ +DMS DD+  +RP RSS+GRTGS+ SKRKRG Q    VE I  A+D  N
Sbjct: 135 EFSSVYSQGIDMSQDDVRASRPSRSSEGRTGSNGSKRKRGSQREVDVEGIHLALDQTN 191

[Close]

BLAST of PI0016229 vs. ExPASy TrEMBL
Match: A0A5A7U0H7 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold648G002060 PE=4 SV=1)

HSP 1 Score: 211.8 bits (538), Expect = 2.3e-51
Identity = 106/180 (58.89%), Postives = 133/180 (73.89%), Query Frame = 0


Query: 1   MAEKLPGSNIQGSLTIDYLIKTFKRTFQAIAKMRGPSCTGFGWNDEVKCIITENDLFDNW 60
           MAEKLPG+NIQ S TID  +K+ K+T+ AIA+MRGPSC+GFGWN+E +CII E DLFD+W
Sbjct: 52  MAEKLPGTNIQESSTIDCHVKSLKKTYHAIAEMRGPSCSGFGWNEEFQCIIAERDLFDSW 111

Query: 61  VKSHPAAKGFLNKSFSYYDQLFYVFGKDCATEACAETFAIVESNVPREYEGFF-ADDVND 120
           +KSHPAAKG L+KSF YYD L YVFGKD AT A +ETF  V SNV   +       D +D
Sbjct: 112 IKSHPAAKGLLHKSFPYYDDLSYVFGKDRATGARSETFPNVGSNVSNMFNDTIPLGDSHD 171

Query: 121 MEIPMMYSQRLDMSPDDIMGTRPGRSSKGRTGSSRSKRKRGGQMVETVEIICNAMDFVND 180
            +IP MYSQ + MSPD++ G R G++S+ R  SS SKRKRG +  ETVE+I + M+F N+
Sbjct: 172 EDIPTMYSQGVHMSPDEMFGIRAGQASERRNCSSVSKRKRGSERYETVEVIRSVMEFGNE 231

[Close]

BLAST of PI0016229 vs. ExPASy TrEMBL
Match: A0A1S3B4L3 (uncharacterized protein LOC103485953 OS=Cucumis melo OX=3656 GN=LOC103485953 PE=4 SV=1)

HSP 1 Score: 211.8 bits (538), Expect = 2.3e-51
Identity = 106/180 (58.89%), Postives = 133/180 (73.89%), Query Frame = 0


Query: 1   MAEKLPGSNIQGSLTIDYLIKTFKRTFQAIAKMRGPSCTGFGWNDEVKCIITENDLFDNW 60
           MAEKLPG+NIQ S TID  +K+ K+T+ AIA+MRGPSC+GFGWN+E +CII E DLFD+W
Sbjct: 52  MAEKLPGTNIQESSTIDCHVKSLKKTYHAIAEMRGPSCSGFGWNEEFQCIIAERDLFDSW 111

Query: 61  VKSHPAAKGFLNKSFSYYDQLFYVFGKDCATEACAETFAIVESNVPREYEGFF-ADDVND 120
           +KSHPAAKG L+KSF YYD L YVFGKD AT A +ETF  V SNV   +       D +D
Sbjct: 112 IKSHPAAKGLLHKSFPYYDDLSYVFGKDRATGARSETFPNVGSNVSNMFNDTIPLGDSHD 171

Query: 121 MEIPMMYSQRLDMSPDDIMGTRPGRSSKGRTGSSRSKRKRGGQMVETVEIICNAMDFVND 180
            +IP MYSQ + MSPD++ G R G++S+ R  SS SKRKRG +  ETVE+I + M+F N+
Sbjct: 172 EDIPTMYSQGVHMSPDEMFGIRAGQASERRNCSSVSKRKRGSERYETVEVIRSVMEFGNE 231

[Close]

BLAST of PI0016229 vs. ExPASy TrEMBL
Match: A0A5A7V6Q9 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold99G00200 PE=4 SV=1)

HSP 1 Score: 211.5 bits (537), Expect = 3.0e-51
Identity = 108/180 (60.00%), Postives = 132/180 (73.33%), Query Frame = 0


Query: 1   MAEKLPGSNIQGSLTIDYLIKTFKRTFQAIAKMRGPSCTGFGWNDEVKCIITENDLFDNW 60
           MA+KLPG  ++ +  ID  IKT KRTFQAIA+MRGP+C+GFGWNDE KCI+ E +LFDNW
Sbjct: 52  MAKKLPGCQVRATTVIDCRIKTLKRTFQAIAEMRGPACSGFGWNDEEKCIVAEKELFDNW 111

Query: 61  VKSHPAAKGFLNKSFSYYDQLFYVFGKDCATEACAETFAIVESNVP-REYEGFFADDVND 120
           V+SHPAAKG LNKSF YYD+L YVFG+D AT   AETFA V SN P   Y+ F   D N+
Sbjct: 112 VRSHPAAKGLLNKSFPYYDELTYVFGRDRATGRFAETFADVGSNEPGGGYDRFDMGDGNE 171

Query: 121 MEIPMMYSQRLDMSPDDIMGTRPGRSSKGRTGSSRSKRKRGGQMVETVEIICNAMDFVND 180
            + P +YSQ +D+S DD+  +RP R+S+GRTGSS SKRKRG Q    VE I  A+D  N+
Sbjct: 172 -DFPPVYSQGVDISQDDVRASRPSRASEGRTGSSGSKRKRGSQRDFDVEAIHLALDQTNE 230

[Close]

BLAST of PI0016229 vs. ExPASy TrEMBL
Match: A0A5A7VES2 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold21G002250 PE=4 SV=1)

HSP 1 Score: 211.5 bits (537), Expect = 3.0e-51
Identity = 109/180 (60.56%), Postives = 131/180 (72.78%), Query Frame = 0


Query: 1   MAEKLPGSNIQGSLTIDYLIKTFKRTFQAIAKMRGPSCTGFGWNDEVKCIITENDLFDNW 60
           MAEKLPG  ++ +  ID  IKT KRTFQAIA+MRGP+C+GFGWNDE KCII E +LFDNW
Sbjct: 52  MAEKLPGCQVRATTVIDCRIKTLKRTFQAIAEMRGPACSGFGWNDEEKCIIAEKELFDNW 111

Query: 61  VKSHPAAKGFLNKSFSYYDQLFYVFGKDCATEACAETFAIVESNVP-REYEGFFADDVND 120
           V+SHPAAKG LNK F YYD+L YVFG+D AT   AETFA V SN P   Y+ F   D N+
Sbjct: 112 VRSHPAAKGLLNKPFPYYDELTYVFGRDRATGRFAETFADVGSNEPGGGYDRFDMGDGNE 171

Query: 121 MEIPMMYSQRLDMSPDDIMGTRPGRSSKGRTGSSRSKRKRGGQMVETVEIICNAMDFVND 180
            + P +YSQ +D+S DD+  +RP R+S+GRTGSS SKRKRG Q    VE I  A+D  N+
Sbjct: 172 -DFPPVYSQGVDISQDDVRASRPSRASEGRTGSSGSKRKRGSQRDFDVEAIHLALDQTNE 230

[Close]

BLAST of PI0016229 vs. NCBI nr
Match: KAA0041550.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYK19704.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 214.9 bits (546), Expect = 5.6e-52
Identity = 109/178 (61.24%), Postives = 130/178 (73.03%), Query Frame = 0


Query: 1   MAEKLPGSNIQGSLTIDYLIKTFKRTFQAIAKMRGPSCTGFGWNDEVKCIITENDLFDNW 60
           MA+KLPG  ++ +  IDY IKT KRTFQAIA+MRGP+C+GFGWN+E KCII E +LFDNW
Sbjct: 15  MAKKLPGCCVRATTVIDYRIKTLKRTFQAIAEMRGPACSGFGWNNEEKCIIMEKELFDNW 74

Query: 61  VKSHPAAKGFLNKSFSYYDQLFYVFGKDCATEACAETFAIVESNVPREYEGFFADDVNDM 120
           V+SHPAAKG LNK FSYYD+L YVF  D AT+  AETF  + SN P  YEGF   D N+ 
Sbjct: 75  VRSHPAAKGLLNKPFSYYDELTYVFDSDRATDRFAETFVDMGSNEPDGYEGFDMADGNE- 134

Query: 121 EIPMMYSQRLDMSPDDIMGTRPGRSSKGRTGSSRSKRKRGGQMVETVEIICNAMDFVN 179
           E   +YSQ +DMS DD+  +RP RSS+GRTGS+ SKRKRG Q    VE I  A+D  N
Sbjct: 135 EFSSVYSQGIDMSQDDVRASRPSRSSEGRTGSNGSKRKRGSQREVDVEGIHLALDQTN 191

[Close]

BLAST of PI0016229 vs. NCBI nr
Match: XP_031744343.1 (uncharacterized protein LOC116404989 [Cucumis sativus] >XP_031744344.1 uncharacterized protein LOC116404989 [Cucumis sativus])

HSP 1 Score: 212.6 bits (540), Expect = 2.8e-51
Identity = 107/179 (59.78%), Postives = 126/179 (70.39%), Query Frame = 0


Query: 1   MAEKLPGSNIQGSLTIDYLIKTFKRTFQAIAKMRGPSCTGFGWNDEVKCIITENDLFDNW 60
           M  KLPG N+  +  ID  IKT KR++Q IA+MRGPSC GFGWND+VKCI+ E +LFDNW
Sbjct: 2   MVAKLPGCNVHATTVIDCRIKTLKRSYQEIAEMRGPSCGGFGWNDDVKCIVAEKELFDNW 61

Query: 61  VKSHPAAKGFLNKSFSYYDQLFYVFGKDCATEACAETFAIVESNVPREYEGFFADDVNDM 120
           V+SHPAAKG LNK F YYD+L YVFGKD A    AETFA V SNVP  +E F   D+NDM
Sbjct: 62  VRSHPAAKGLLNKLFPYYDELAYVFGKDRAMGTHAETFADVGSNVPPGFEEFPPVDLNDM 121

Query: 121 EIPMMYSQRLDMSPDDIMGTRPGRSSKGRTGSSRSKRKRGGQMVETVEIICNAMDFVND 180
           E P M S R +MS DDI   RP R +  RT SS SKR+RGGQ +ET ++I +AM    D
Sbjct: 122 EFPSMSSHRFNMSQDDI--ARPSRGTDSRTTSSGSKRRRGGQTLETADVIKDAMALQTD 178

[Close]

BLAST of PI0016229 vs. NCBI nr
Match: XP_008441954.1 (PREDICTED: uncharacterized protein LOC103485953 [Cucumis melo] >KAA0047736.1 retrotransposon protein [Cucumis melo var. makuwa] >TYK08388.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 211.8 bits (538), Expect = 4.7e-51
Identity = 106/180 (58.89%), Postives = 133/180 (73.89%), Query Frame = 0


Query: 1   MAEKLPGSNIQGSLTIDYLIKTFKRTFQAIAKMRGPSCTGFGWNDEVKCIITENDLFDNW 60
           MAEKLPG+NIQ S TID  +K+ K+T+ AIA+MRGPSC+GFGWN+E +CII E DLFD+W
Sbjct: 52  MAEKLPGTNIQESSTIDCHVKSLKKTYHAIAEMRGPSCSGFGWNEEFQCIIAERDLFDSW 111

Query: 61  VKSHPAAKGFLNKSFSYYDQLFYVFGKDCATEACAETFAIVESNVPREYEGFF-ADDVND 120
           +KSHPAAKG L+KSF YYD L YVFGKD AT A +ETF  V SNV   +       D +D
Sbjct: 112 IKSHPAAKGLLHKSFPYYDDLSYVFGKDRATGARSETFPNVGSNVSNMFNDTIPLGDSHD 171

Query: 121 MEIPMMYSQRLDMSPDDIMGTRPGRSSKGRTGSSRSKRKRGGQMVETVEIICNAMDFVND 180
            +IP MYSQ + MSPD++ G R G++S+ R  SS SKRKRG +  ETVE+I + M+F N+
Sbjct: 172 EDIPTMYSQGVHMSPDEMFGIRAGQASERRNCSSVSKRKRGSERYETVEVIRSVMEFGNE 231

[Close]

BLAST of PI0016229 vs. NCBI nr
Match: KAA0062588.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 211.5 bits (537), Expect = 6.1e-51
Identity = 107/180 (59.44%), Postives = 131/180 (72.78%), Query Frame = 0


Query: 1   MAEKLPGSNIQGSLTIDYLIKTFKRTFQAIAKMRGPSCTGFGWNDEVKCIITENDLFDNW 60
           MAEKLPG  ++ +  ID  IKT KRTFQAIA+MRGP+C+GFGWNDE KCI+ E +LFDNW
Sbjct: 28  MAEKLPGCQVRATTVIDCRIKTLKRTFQAIAEMRGPACSGFGWNDEEKCIVAEKELFDNW 87

Query: 61  VKSHPAAKGFLNKSFSYYDQLFYVFGKDCATEACAETFAIVESNVP-REYEGFFADDVND 120
           V+SHPA KG LNK F YYD+L YVFG+D AT   AETFA V SN P   Y+ F   D N+
Sbjct: 88  VRSHPAVKGLLNKPFPYYDELTYVFGRDRATGRFAETFADVGSNEPGGGYDRFDMGDGNE 147

Query: 121 MEIPMMYSQRLDMSPDDIMGTRPGRSSKGRTGSSRSKRKRGGQMVETVEIICNAMDFVND 180
            + P +YSQ +D+S DD+  +RP R+S+GRTGSSRSKRKRG Q    +E I  A+D  N+
Sbjct: 148 -DFPSVYSQGVDISQDDVRASRPSRASEGRTGSSRSKRKRGSQRDFELEAIHLALDQTNE 206

[Close]

BLAST of PI0016229 vs. NCBI nr
Match: KAA0066208.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 211.5 bits (537), Expect = 6.1e-51
Identity = 109/180 (60.56%), Postives = 131/180 (72.78%), Query Frame = 0


Query: 1   MAEKLPGSNIQGSLTIDYLIKTFKRTFQAIAKMRGPSCTGFGWNDEVKCIITENDLFDNW 60
           MAEKLPG  ++ +  ID  IKT KRTFQAIA+MRGP+C+GFGWNDE KCII E +LFDNW
Sbjct: 52  MAEKLPGCQVRATTVIDCRIKTLKRTFQAIAEMRGPACSGFGWNDEEKCIIAEKELFDNW 111

Query: 61  VKSHPAAKGFLNKSFSYYDQLFYVFGKDCATEACAETFAIVESNVP-REYEGFFADDVND 120
           V+SHPAAKG LNK F YYD+L YVFG+D AT   AETFA V SN P   Y+ F   D N+
Sbjct: 112 VRSHPAAKGLLNKPFPYYDELTYVFGRDRATGRFAETFADVGSNEPGGGYDRFDMGDGNE 171

Query: 121 MEIPMMYSQRLDMSPDDIMGTRPGRSSKGRTGSSRSKRKRGGQMVETVEIICNAMDFVND 180
            + P +YSQ +D+S DD+  +RP R+S+GRTGSS SKRKRG Q    VE I  A+D  N+
Sbjct: 172 -DFPPVYSQGVDISQDDVRASRPSRASEGRTGSSGSKRKRGSQRDFDVEAIHLALDQTNE 230

[Close]

BLAST of PI0016229 vs. TAIR 10
Match: AT1G30140.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G27260.1); Has 313 Blast hits to 256 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 8; Plants - 295; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink). )

HSP 1 Score: 47.4 bits (111), Expect = 1.4e-05
Identity = 25/90 (27.78%), Postives = 48/90 (53.33%), Query Frame = 0


Query: 20  IKTFKRTFQAIAKMRGPSCTGFGWNDEVKCIITENDLFDNWVKSHPAAKGFLNKSFSYYD 79
           +K  K  +Q+   ++  S +GFGW+ E K     ++++ +++K+HP  K    +S  +++
Sbjct: 70  LKFLKNLYQSYLDLKRFS-SGFGWDPETKKFTAPDEVWRDYLKAHPNHKHMQTESIDHFE 129

Query: 80  QLFYVFGKDCATEACAETFAIVESNVPREY 110
            L  +FG   AT + A    + +S  PR Y
Sbjct: 130 DLQIIFGDVVATGSFA--VGMSDSTCPRIY 156

[Close]

BLAST of PI0016229 vs. TAIR 10
Match: AT4G02210.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G24960.2); Has 791 Blast hits to 465 proteins in 19 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 17; Plants - 748; Viruses - 0; Other Eukaryotes - 26 (source: NCBI BLink). )

HSP 1 Score: 43.9 bits (102), Expect = 1.6e-04
Identity = 21/83 (25.30%), Postives = 41/83 (49.40%), Query Frame = 0


Query: 21  KTFKRTFQAIAKMRGPSCTGFGWNDEVKCIITENDLFDNWVKSHPAAKGFLNKSFSYYDQ 80
           KT +  F+++  +      GF W+D  + ++ +N ++D ++K HP ++ F  KS   Y  
Sbjct: 71  KTLRNLFKSVNNLLIED--GFSWDDTRQMVVADNCVWDEYLKIHPDSRSFRIKSIPCYKD 130

Query: 81  LFYVFGKDCATEACAETFAIVES 104
           L  V+    +     E+ +  ES
Sbjct: 131 LCLVYSDGMSEHKAEESISEGES 151

[Close]

BLAST of PI0016229 vs. TAIR 10
Match: AT4G02210.2 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G24960.2). )

HSP 1 Score: 43.9 bits (102), Expect = 1.6e-04
Identity = 21/83 (25.30%), Postives = 41/83 (49.40%), Query Frame = 0


Query: 21  KTFKRTFQAIAKMRGPSCTGFGWNDEVKCIITENDLFDNWVKSHPAAKGFLNKSFSYYDQ 80
           KT +  F+++  +      GF W+D  + ++ +N ++D ++K HP ++ F  KS   Y  
Sbjct: 71  KTLRNLFKSVNNLLIED--GFSWDDTRQMVVADNCVWDEYLKIHPDSRSFRIKSIPCYKD 130

Query: 81  LFYVFGKDCATEACAETFAIVES 104
           L  V+    +     E+ +  ES
Sbjct: 131 LCLVYSDGMSEHKAEESISEGES 151

[Close]

BLAST of PI0016229 vs. TAIR 10
Match: AT2G24960.2 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G02210.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 43.5 bits (101), Expect = 2.1e-04
Identity = 14/49 (28.57%), Postives = 31/49 (63.27%), Query Frame = 0


Query: 40  GFGWNDEVKCIITENDLFDNWVKSHPAAKGFLNKSFSYYDQLFYVFGKD 89
           GF W+     +I ++D+++ ++++HP A+ +  K+   Y  L ++FGK+
Sbjct: 400 GFSWDARRDMVIADDDIWNTYIQAHPEARSYRVKTIPSYPNLCFIFGKE 448

The following BLAST results are available for this feature:

BLAST of PI0016229 vs.


Match Name	E-value	Identity	Description

BLAST of PI0016229 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3D831	2.7e-52	61.24	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7U0H7	2.3e-51	58.89	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A1S3B4L3	2.3e-51	58.89	uncharacterized protein LOC103485953 OS=Cucumis melo OX=3656 GN=LOC103485953 PE=...	[more]
A0A5A7V6Q9	3.0e-51	60.00	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5A7VES2	3.0e-51	60.56	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]

BLAST of PI0016229 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0041550.1	5.6e-52	61.24	retrotransposon protein [Cucumis melo var. makuwa] >TYK19704.1 retrotransposon p...	[more]
XP_031744343.1	2.8e-51	59.78	uncharacterized protein LOC116404989 [Cucumis sativus] >XP_031744344.1 uncharact...	[more]
XP_008441954.1	4.7e-51	58.89	PREDICTED: uncharacterized protein LOC103485953 [Cucumis melo] >KAA0047736.1 ret...	[more]
KAA0062588.1	6.1e-51	59.44	retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0066208.1	6.1e-51	60.56	retrotransposon protein [Cucumis melo var. makuwa]	[more]

BLAST of PI0016229 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G30140.1	1.4e-05	27.78	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT4G02210.1	1.6e-04	25.30	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT4G02210.2	1.6e-04	25.30	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT2G24960.2	2.1e-04	28.57	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 132..162
None	No IPR available	PANTHER	PTHR46250	MYB/SANT-LIKE DNA-BINDING DOMAIN PROTEIN-RELATED	coord: 1..160

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
PI0016229.1	PI0016229.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016020	membrane