PI0016047 (gene) Melon (PI 482460) v1

Overview
NamePI0016047
Typegene
OrganismCucumis metuliferus (Melon (PI 482460) v1)
Descriptiongag_pre-integrs domain-containing protein
Locationchr05: 12564816 .. 12565170 (-)
RNA-Seq ExpressionPI0016047
SyntenyPI0016047
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGATCTCTTCAATCTCATGAGCACAGATTGAAGTTGTTTGATTCTACTCCTTCAGAAGAAGCTTTTCATATGCAATCCTCTTCTAGAGGGCGATTTGGTGGAAGAAGAGGTGGACGTGGTGGTAGAGGAAATGGATGATCCAACGACGTAAAAAATTCAGAGTCAGAGAGCAGAGACAATCAATCTTCTTCAAATAGAGGAAGGGGAAGAAGTTCAAATAGAGGAAGAGGCAGAAATGATGGTCGTGGAGATTTTTCTCGCATACAATGTTTCAATTGTAGACTTTATGAACATTTTCAAGCAGACTGTTGGTCTAAGAAGGCTAATTCTAATCAAGCAGAAACCACTCTAA

mRNA sequence

ATGAGATCTCTTCAATCTCATGAGCACAGATTGAAGTTGTTTGATTCTACTCCTTCAGAAGAAGCTTTTCATATGCAATCCTCTTCTAGAGGGCGATTTGGTGGAAGAAGAGGTGGACGTGGTGCAGAGACAATCAATCTTCTTCAAATAGAGGAAGGGGAAGAAGTTCAAATAGAGGAAGAGGCAGAAATGATGGTCGTGGAGATTTTTCTCGCATACAATGTTTCAATTGTAGACTTTATGAACATTTTCAAGCAGACTGTTGGTCTAAGAAGGCTAATTCTAATCAAGCAGAAACCACTCTAA

Coding sequence (CDS)

ATGAGATCTCTTCAATCTCATGAGCACAGATTGAAGTTGTTTGATTCTACTCCTTCAGAAGAAGCTTTTCATATGCAATCCTCTTCTAGAGGGCGATTTGGTGGAAGAAGAGGTGGACGTGGTGCAGAGACAATCAATCTTCTTCAAATAGAGGAAGGGGAAGAAGTTCAAATAGAGGAAGAGGCAGAAATGATGGTCGTGGAGATTTTTCTCGCATACAATGTTTCAATTGTAGACTTTATGAACATTTTCAAGCAGACTGTTGGTCTAAGAAGGCTAATTCTAATCAAGCAGAAACCACTCTAA

Protein sequence

MRSLQSHEHRLKLFDSTPSEEAFHMQSSSRGRFGGRRGGRGAETINLLQIEEGEEVQIEEEAEMMVVEIFLAYNVSIVDFMNIFKQTVGLRRLILIKQKPL
Homology
BLAST of PI0016047 vs. ExPASy TrEMBL
Match: A0A5A7UV00 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold98G001240 PE=4 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 3.9e-08
Identity = 34/42 (80.95%), Postives = 37/42 (88.10%), Query Frame = 0

Query: 1  MRSLQSHEHRLKLFDSTPSEEAFHMQSSSRGRFGGRRGGRGA 43
          M SLQSHE RLKLFDSTPS+E FHMQSSSRG+ GGRRGG G+
Sbjct: 1  MGSLQSHELRLKLFDSTPSKEPFHMQSSSRGQLGGRRGGCGS 42

BLAST of PI0016047 vs. ExPASy TrEMBL
Match: A0A5D3CHY9 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold874G00100 PE=4 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 3.9e-08
Identity = 34/42 (80.95%), Postives = 37/42 (88.10%), Query Frame = 0

Query: 1  MRSLQSHEHRLKLFDSTPSEEAFHMQSSSRGRFGGRRGGRGA 43
          M SLQSHE RLKLFDSTPS+E FHMQSSSRG+ GGRRGG G+
Sbjct: 1  MGSLQSHELRLKLFDSTPSKEPFHMQSSSRGQLGGRRGGCGS 42

BLAST of PI0016047 vs. ExPASy TrEMBL
Match: A0A5C7IKI5 (gag_pre-integrs domain-containing protein OS=Acer yangbiense OX=1000413 GN=EZV62_003901 PE=4 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 2.6e-04
Identity = 33/70 (47.14%), Postives = 45/70 (64.29%), Query Frame = 0

Query: 1   MRSLQSHEHRLKLFDSTPSEEAF----HMQSSSRGRFGGRRGGRGAETINLLQIEEGEEV 60
           M SLQSHE RLK FD+TP E+AF    +   SSRGR GGR GGR +E+ N     + E +
Sbjct: 143 MGSLQSHELRLKQFDTTPLEQAFQSHAYFNQSSRGRRGGRGGGRNSESRNNNNDSKEESI 202

Query: 61  QIEEEAEMMV 67
           +I ++  ++V
Sbjct: 203 KIGDDKRLLV 212

BLAST of PI0016047 vs. NCBI nr
Match: XP_038877452.1 (uncharacterized protein LOC120069734 [Benincasa hispida])

HSP 1 Score: 126.7 bits (317), Expect = 1.1e-25
Identity = 74/101 (73.27%), Postives = 79/101 (78.22%), Query Frame = 0

Query: 1   MRSLQSHEHRLKLFDSTPSEEAFHMQSSSRGRFGGRRGGRG--------------AETIN 60
           M SLQSHE RLKLFDS P E+AFHMQSSSRGR GGRR GRG              AETIN
Sbjct: 110 MGSLQSHELRLKLFDSNPLEKAFHMQSSSRGRSGGRRVGRGNRGNGRSNVVTSQRAETIN 169

Query: 61  LLQIEEGEEVQIEEEAEMMVVEIFLAYNVSIVDFMNIFKQT 88
           LLQIEEGEEVQIE+EAE++VVEIFL YNVSIVD M+IFKQT
Sbjct: 170 LLQIEEGEEVQIEQEAEVVVVEIFLTYNVSIVDVMDIFKQT 210

BLAST of PI0016047 vs. NCBI nr
Match: KAA0058944.1 (hypothetical protein E6C27_scaffold98G001240 [Cucumis melo var. makuwa])

HSP 1 Score: 67.4 bits (163), Expect = 8.1e-08
Identity = 34/42 (80.95%), Postives = 37/42 (88.10%), Query Frame = 0

Query: 1  MRSLQSHEHRLKLFDSTPSEEAFHMQSSSRGRFGGRRGGRGA 43
          M SLQSHE RLKLFDSTPS+E FHMQSSSRG+ GGRRGG G+
Sbjct: 1  MGSLQSHELRLKLFDSTPSKEPFHMQSSSRGQLGGRRGGCGS 42

BLAST of PI0016047 vs. NCBI nr
Match: TYK10980.1 (hypothetical protein E5676_scaffold874G00100 [Cucumis melo var. makuwa])

HSP 1 Score: 67.4 bits (163), Expect = 8.1e-08
Identity = 34/42 (80.95%), Postives = 37/42 (88.10%), Query Frame = 0

Query: 1  MRSLQSHEHRLKLFDSTPSEEAFHMQSSSRGRFGGRRGGRGA 43
          M SLQSHE RLKLFDSTPS+E FHMQSSSRG+ GGRRGG G+
Sbjct: 1  MGSLQSHELRLKLFDSTPSKEPFHMQSSSRGQLGGRRGGCGS 42

BLAST of PI0016047 vs. NCBI nr
Match: XP_038904397.1 (uncharacterized protein LOC120090760 [Benincasa hispida])

HSP 1 Score: 57.8 bits (138), Expect = 6.4e-05
Identity = 35/66 (53.03%), Postives = 45/66 (68.18%), Query Frame = 0

Query: 20  EEAFHMQSSSRGRFGGRRGGRGAETINLLQIEEGEEVQIEEEAEMMVVEIFLAYNVSIVD 79
           EE+ H+ + S     G      A+TI LLQIEE  +VQ+EEEAE+ VV+IFL YNVSIV+
Sbjct: 53  EESKHLPTLSINSLMGYLQSHRAKTIKLLQIEEQGQVQVEEEAEVEVVKIFLTYNVSIVE 112

Query: 80  FMNIFK 86
            M IF+
Sbjct: 113 VMGIFQ 118

BLAST of PI0016047 vs. NCBI nr
Match: TXG68966.1 (hypothetical protein EZV62_003901 [Acer yangbiense])

HSP 1 Score: 54.7 bits (130), Expect = 5.4e-04
Identity = 33/70 (47.14%), Postives = 45/70 (64.29%), Query Frame = 0

Query: 1   MRSLQSHEHRLKLFDSTPSEEAF----HMQSSSRGRFGGRRGGRGAETINLLQIEEGEEV 60
           M SLQSHE RLK FD+TP E+AF    +   SSRGR GGR GGR +E+ N     + E +
Sbjct: 143 MGSLQSHELRLKQFDTTPLEQAFQSHAYFNQSSRGRRGGRGGGRNSESRNNNNDSKEESI 202

Query: 61  QIEEEAEMMV 67
           +I ++  ++V
Sbjct: 203 KIGDDKRLLV 212

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5A7UV003.9e-0880.95Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A5D3CHY93.9e-0880.95Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5C7IKI52.6e-0447.14gag_pre-integrs domain-containing protein OS=Acer yangbiense OX=1000413 GN=EZV62... [more]
Match NameE-valueIdentityDescription
XP_038877452.11.1e-2573.27uncharacterized protein LOC120069734 [Benincasa hispida][more]
KAA0058944.18.1e-0880.95hypothetical protein E6C27_scaffold98G001240 [Cucumis melo var. makuwa][more]
TYK10980.18.1e-0880.95hypothetical protein E5676_scaffold874G00100 [Cucumis melo var. makuwa][more]
XP_038904397.16.4e-0553.03uncharacterized protein LOC120090760 [Benincasa hispida][more]
TXG68966.15.4e-0447.14hypothetical protein EZV62_003901 [Acer yangbiense][more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 19..38

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
PI0016047.1PI0016047.1mRNA