PI0016027 (gene) Melon (PI 482460) v1

Overview


Name	PI0016027
Type	gene
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	DNA-directed RNA polymerase subunit beta''
Location	tig00003741: 147260 .. 151330 (-)
RNA-Seq Expression	PI0016027
Synteny	PI0016027

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGGAACGGGCCGATCTGGTCTTTCACAATAAAGTGATAGATGGAACTGCCATTAAACGACTTATTAGCAGATTAATAGATCACTTCGGAATGGCATATACATCACACATCCTGGATCAACTAAAGACTCTGGGGTTCCAGCAGGCCACTGCTACATCCATTTCATTAGGAATTGATGATCTTTTAACAATCCCTTCTAAGGGATGGCTAGTCCAAGATGCTGAACAACAAAGTTTGATTTTGGAAAAACACCATCATTATGGAAACGTACACGCAGTAGAAAAATTACGCCAGTCCATTGAGATATGGTATGCTACAAGTGAATATTTGCGACAAGAAATGAATCCTAATTTTAGGATGACTGACCCTTTTAATCCAGTCCATATAATGTCTTTTTCGGGAGCTCGAGGAAATGCATCTCAAGTACACCAATTAGTAGGTATGAGAGGATTAATGTCAGATCCACAAGGACAAATGATTGATTTACCCATTCAAAGCAATTTACGTGAGGGGCTGTCCTTAACGGAATATATAATTTCTTGCTACGGAGCGCGGAAAGGAGTTGTGGATACTGCTGTACGAACATCGGATGCTGGATATCTTACACGTAGACTTGTTGAAGTAGTTCAACACATTGTTGTACGTAGAACCGATTGTGGAACCATCCGAGGGATTTTAGTGAGTCCTGGAAATAGGATGATTCCGGAAAGAATTTTTATCCAAACATTAATTGGTCGTGTATTAGCGGACGATATATATATGGGCCCGCGATGCATTGGCGTTCGAAATCAAGATATTGGTATTGGACTTATTAATCGATTCATAACCTTTCAAACACAACCAATATCTATTCGGACTCCCTTTACTTGTAGGAGTACATCTTGGATCTGCCGATTATGTTATGGACGAAGTCCTACTCACGGGGACCTGGTCGAATTGGGAGAAGCCGTAGGTATTATTGCGGGTCAATCTATTGGCGAACCGGGTACTCAACTAACATTAAGAACTTTTCATACCGGCGGAGTATTCACAGGGGGGACTGCAGAACATATACGAGCTCCTTCTAATGGCAAAATAAAATTCAATGAGGATTTGGTTCATCCCACACGTACACGCCATGGGCATCCTGCTTTTTTATGTTATATAGACTTGTATGTAACTATTGAGAGTGAGGATATTATACATAACGTCACTATTCCACCAAAAAGTTTACTTTTAGTTCAAAACGATCAATATGTAGAATCAGAACAAGTGATTGCTGAGATTCGCGCGGGAACATACACTCTTAATTTAAAAGAGAGAGTTCGAAAACATATTTATTCTGACTCAGAGGGAGAAATGCATTGGAGTACCGACGTGTACCATGCACCCGAATTTACATATAGTAATGTCCATCTCTTACCAAAAACAAGTCATTTATGGATATTATCAGGAGGTTCGTGCGGATGCAGTGTAGTCCCTTTTTCACTCTACAAGGATCAAGATCAAATTAACGTTCATTCTCTTTGTGTCGAAAGAAGATATATTTCTAGCCTTTCAGTAAATAATGATAAAGTGGGACAAAAATTTTATGGTCCGCATCTCTCTGGTAAAAACGAAAGCGGAATTCCTGATTATTCAGAACTTAATCCAATCCTATGTACGGGTCAATCTAATCTCACATATCCTGCTATTTTCCACGGTAATTCTGATTTATTGGCAAAGAGGCGAAGAAATGGATTCATCATTCAATTTGAATCACTTCAAGAACGAGAAAAAGAACAACGACCCCCTTCCGGTATTTCGATTGAAATACCCATAAATGGTATTTTTCGTAGAAATAGTATTCTTGCTTATTTCGATGATCCTCAATACAGAAGAAATAGTTCAGGAATTACTAAATATGGGACTATAGGGGTGCATTCAATCCTCAAAAAAGAGGATTTGATTGAGTATCGAGGAGTCAAAGACTTTAAGCCAAAATACCAAATGCAAATGAAAGTGGATCGATTTTTTTTCATTCCCGAGGAAGTGCATATTTTACCTGAATCTTCTTCCATAATGGTACGCAACAATAGTATCATTGGAGTAGCTACACGACTAACTTTAAGTATAAGAAGCCGAGTAGGCGGATTGGTCCGAGTGGAGAAAAAAAAAAAAAGGATTGAACTCAAAATATTTTCTGGAGATATACATTTTCCTGGAGAGATGGATAAGATATCCCGACACAATGGCATCTTGATACCACCAGAAAGAGTAAAAAAAAATTCTAAGAAATCAAAAAAATCGAAAAATTGGATTTATGTCCAGTGGATCACACCTACCAAGAAAAAGTATTTTGTTTTTGTTCGACCTGTAATCATATATGAACTAGCCGACGGTATAAATTTAGTAAAACTTTTCCCACAGGATCTATTGCAAGAAAGGGATAATCTGGAGCTTAGAGTTGTCAATTATATACTTTATGGAAATGGCAAACCAATTCGGGGAATTTCTGGCACAAGCATTCAATTAGTTCGGACTTGTTTATTGTTGAATTGGGACCGAGACAAAAAAAGCTCTTCTATCGAAGACGCGCGCGCTTCCTTTGTTGAAGTAAGTACAAATGGTCTGGTTCGAAATTTCCTACGAATAGACTTAGTGAAATCCGATACTGCGTATATCAGAAAAAGGAAAGATCCGTCAGGTTCAGGATTGATCTTTAATAATGAGTCAGATCGCACCAATATCAATCCATTTTTTTCTATTTCTTCCAAGACAAGGGTTCCACAATCTCCGAGTCAAAATCAAGGAACTATTCGTACGTTGTTGAATAGAAATAAAGAACGCCAATCTTTGATAATTTTGTCAGCATCGAATTGTTTGCAAATGGATCTATTCAACGATGTAAAAGATTATAATGTCATAAAAGAATCAAGTAAAAAGGATCCTCTAATTTCAATTAGGAATTCGTTAGGACCTTTAGGGGCGGCCCCTCAAATTGTGAATTTTTATTCATTTTATGACTTAATAACTCATAATCCGATCTCCCTAACTAAATATTTGCAACTTGCCAATTTAAAACAGACTTTTCAAGTACTTAAATATTATTTAATGGATGAAAACGGGGGGATTTTTAATTCCGATCCATGCAGTAACATCGTTTTCAATACATTTAATTTAAATTGGCATTTTCTGCATCATAATTATCACAATAATTATTGTGAAGAAAGAACTACAAGAATTAGTCTTGGACAGTTTTTTTTTGAAAATGTATGTATAGCCAAAAATAGACCACACCTAAAATCGGGTCAAATTATAATTGTTCAAGTTGATTCTGTAGTAATAAGATCAGCTAAGCCTTATTTGGCCACTTCAGGAGCAACTGTTCATCGCCATTATGGCGAAATCCTTTACGAAGGAGATACCTTAGTTACATTTATATATGAAAAATCACGATCTGGTGATATAACGCAGGGTCTTCCAAAAGTCGAACAAGTATTAGAAGTGCGTTCGATTGATTCAATATCGATGAGCCTAGAAAAGAGAATTGAGGGTTGGAACGAGCGTATAACAAGAATTCTTGGAATTCCTTGGGGATTTTTGATTGGTGCTGAACTAACGATAGTGCAAAGTCGTATCTCTTTGGTTAATAAGATCCAAAAGGTTTATCGATCCCAGGGGGTGGAGATCCATAATAGACATATCGAAATTATTGTACGTCAAATAACATCAAAAGTGTTGGTTTCAGAAGATGGAATGTCTAATGTTTTTTCACCTGGAGAACTCATTGGGTTGTTACGAGCGGAACGAACAGGGCGTGCTTTGGAAGAAGCGATCTGTTACCGAGCCGTATTATTGGGAATAACGAAAGCATCTCTAAATACTCAAAGTTTCATATCGGAAGCAAGTTTTCAAGAAACTGCTCGAGTTTTAGCAAAAGCCGCCCTCCGAGGTCGTATCGATTGGTTGAGAGGTTTGAAAGAGAACGTTGTTCTAGGAGGAATGATACCCGTTGGTACCGGATTCAGAGAATTAGCGCACCGTTCGAGGCAATATAACAATATTCCTTTAGAAACCCCCCAAAAAAAATTTTCGAGGGGGAAATGA

mRNA sequence

ATGGCGGAACGGGCCGATCTGGTCTTTCACAATAAAGTGATAGATGGAACTGCCATTAAACGACTTATTAGCAGATTAATAGATCACTTCGGAATGGCATATACATCACACATCCTGGATCAACTAAAGACTCTGGGGTTCCAGCAGGCCACTGCTACATCCATTTCATTAGGAATTGATGATCTTTTAACAATCCCTTCTAAGGGATGGCTAGTCCAAGATGCTGAACAACAAAGTTTGATTTTGGAAAAACACCATCATTATGGAAACGTACACGCAGTAGAAAAATTACGCCAGTCCATTGAGATATGGTATGCTACAAGTGAATATTTGCGACAAGAAATGAATCCTAATTTTAGGATGACTGACCCTTTTAATCCAGTCCATATAATGTCTTTTTCGGGAGCTCGAGGAAATGCATCTCAAGTACACCAATTAGTAGGTATGAGAGGATTAATGTCAGATCCACAAGGACAAATGATTGATTTACCCATTCAAAGCAATTTACGTGAGGGGCTGTCCTTAACGGAATATATAATTTCTTGCTACGGAGCGCGGAAAGGAGTTGTGGATACTGCTGTACGAACATCGGATGCTGGATATCTTACACGTAGACTTGTTGAAGTAGTTCAACACATTGTTGTACGTAGAACCGATTGTGGAACCATCCGAGGGATTTTAGTGAGTCCTGGAAATAGGATGATTCCGGAAAGAATTTTTATCCAAACATTAATTGGTCGTGTATTAGCGGACGATATATATATGGGCCCGCGATGCATTGGCGTTCGAAATCAAGATATTGGTATTGGACTTATTAATCGATTCATAACCTTTCAAACACAACCAATATCTATTCGGACTCCCTTTACTTGTAGGAGTACATCTTGGATCTGCCGATTATGTTATGGACGAAGTCCTACTCACGGGGACCTGGTCGAATTGGGAGAAGCCGTAGGTATTATTGCGGGTCAATCTATTGGCGAACCGGGTACTCAACTAACATTAAGAACTTTTCATACCGGCGGAGTATTCACAGGGGGGACTGCAGAACATATACGAGCTCCTTCTAATGGCAAAATAAAATTCAATGAGGATTTGGTTCATCCCACACGTACACGCCATGGGCATCCTGCTTTTTTATGTTATATAGACTTGTATGTAACTATTGAGAGTGAGGATATTATACATAACGTCACTATTCCACCAAAAAGTTTACTTTTAGTTCAAAACGATCAATATGTAGAATCAGAACAAGTGATTGCTGAGATTCGCGCGGGAACATACACTCTTAATTTAAAAGAGAGAGTTCGAAAACATATTTATTCTGACTCAGAGGGAGAAATGCATTGGAGTACCGACGTGTACCATGCACCCGAATTTACATATAGTAATGTCCATCTCTTACCAAAAACAAGTCATTTATGGATATTATCAGGAGGTTCGTGCGGATGCAGTGTAGTCCCTTTTTCACTCTACAAGGATCAAGATCAAATTAACGTTCATTCTCTTTGTGTCGAAAGAAGATATATTTCTAGCCTTTCAGTAAATAATGATAAAGTGGGACAAAAATTTTATGGTCCGCATCTCTCTGGTAAAAACGAAAGCGGAATTCCTGATTATTCAGAACTTAATCCAATCCTATGTACGGGTCAATCTAATCTCACATATCCTGCTATTTTCCACGGTAATTCTGATTTATTGGCAAAGAGGCGAAGAAATGGATTCATCATTCAATTTGAATCACTTCAAGAACGAGAAAAAGAACAACGACCCCCTTCCGGTATTTCGATTGAAATACCCATAAATGGTATTTTTCGTAGAAATAGTATTCTTGCTTATTTCGATGATCCTCAATACAGAAGAAATAGTTCAGGAATTACTAAATATGGGACTATAGGGGTGCATTCAATCCTCAAAAAAGAGGATTTGATTGAGTATCGAGGAGTCAAAGACTTTAAGCCAAAATACCAAATGCAAATGAAAGTGGATCGATTTTTTTTCATTCCCGAGGAAGTGCATATTTTACCTGAATCTTCTTCCATAATGGTACGCAACAATAGTATCATTGGAGTAGCTACACGACTAACTTTAAGTATAAGAAGCCGAGTAGGCGGATTGGTCCGAGTGGAGAAAAAAAAAAAAAGGATTGAACTCAAAATATTTTCTGGAGATATACATTTTCCTGGAGAGATGGATAAGATATCCCGACACAATGGCATCTTGATACCACCAGAAAGAGTAAAAAAAAATTCTAAGAAATCAAAAAAATCGAAAAATTGGATTTATGTCCAGTGGATCACACCTACCAAGAAAAAGTATTTTGTTTTTGTTCGACCTGTAATCATATATGAACTAGCCGACGGTATAAATTTAGTAAAACTTTTCCCACAGGATCTATTGCAAGAAAGGGATAATCTGGAGCTTAGAGTTGTCAATTATATACTTTATGGAAATGGCAAACCAATTCGGGGAATTTCTGGCACAAGCATTCAATTAGTTCGGACTTGTTTATTGTTGAATTGGGACCGAGACAAAAAAAGCTCTTCTATCGAAGACGCGCGCGCTTCCTTTGTTGAAGTAAGTACAAATGGTCTGGTTCGAAATTTCCTACGAATAGACTTAGTGAAATCCGATACTGCGTATATCAGAAAAAGGAAAGATCCGTCAGGTTCAGGATTGATCTTTAATAATGAGTCAGATCGCACCAATATCAATCCATTTTTTTCTATTTCTTCCAAGACAAGGGTTCCACAATCTCCGAGTCAAAATCAAGGAACTATTCGTACGTTGTTGAATAGAAATAAAGAACGCCAATCTTTGATAATTTTGTCAGCATCGAATTGTTTGCAAATGGATCTATTCAACGATGTAAAAGATTATAATGTCATAAAAGAATCAAGTAAAAAGGATCCTCTAATTTCAATTAGGAATTCGTTAGGACCTTTAGGGGCGGCCCCTCAAATTGTGAATTTTTATTCATTTTATGACTTAATAACTCATAATCCGATCTCCCTAACTAAATATTTGCAACTTGCCAATTTAAAACAGACTTTTCAAGTACTTAAATATTATTTAATGGATGAAAACGGGGGGATTTTTAATTCCGATCCATGCAGTAACATCGTTTTCAATACATTTAATTTAAATTGGCATTTTCTGCATCATAATTATCACAATAATTATTGTGAAGAAAGAACTACAAGAATTAGTCTTGGACAGTTTTTTTTTGAAAATGTATGTATAGCCAAAAATAGACCACACCTAAAATCGGGTCAAATTATAATTGTTCAAGTTGATTCTGTAGTAATAAGATCAGCTAAGCCTTATTTGGCCACTTCAGGAGCAACTGTTCATCGCCATTATGGCGAAATCCTTTACGAAGGAGATACCTTAGTTACATTTATATATGAAAAATCACGATCTGGTGATATAACGCAGGGTCTTCCAAAAGTCGAACAAGTATTAGAAGTGCGTTCGATTGATTCAATATCGATGAGCCTAGAAAAGAGAATTGAGGGTTGGAACGAGCGTATAACAAGAATTCTTGGAATTCCTTGGGGATTTTTGATTGGTGCTGAACTAACGATAGTGCAAAGTCGTATCTCTTTGGTTAATAAGATCCAAAAGGTTTATCGATCCCAGGGGGTGGAGATCCATAATAGACATATCGAAATTATTGTACGTCAAATAACATCAAAAGTGTTGGTTTCAGAAGATGGAATGTCTAATGTTTTTTCACCTGGAGAACTCATTGGGTTGTTACGAGCGGAACGAACAGGGCGTGCTTTGGAAGAAGCGATCTGTTACCGAGCCGTATTATTGGGAATAACGAAAGCATCTCTAAATACTCAAAGTTTCATATCGGAAGCAAGTTTTCAAGAAACTGCTCGAGTTTTAGCAAAAGCCGCCCTCCGAGGTCGTATCGATTGGTTGAGAGGTTTGAAAGAGAACGTTGTTCTAGGAGGAATGATACCCGTTGGTACCGGATTCAGAGAATTAGCGCACCGTTCGAGGCAATATAACAATATTCCTTTAGAAACCCCCCAAAAAAAATTTTCGAGGGGGAAATGA

Coding sequence (CDS)

ATGGCGGAACGGGCCGATCTGGTCTTTCACAATAAAGTGATAGATGGAACTGCCATTAAACGACTTATTAGCAGATTAATAGATCACTTCGGAATGGCATATACATCACACATCCTGGATCAACTAAAGACTCTGGGGTTCCAGCAGGCCACTGCTACATCCATTTCATTAGGAATTGATGATCTTTTAACAATCCCTTCTAAGGGATGGCTAGTCCAAGATGCTGAACAACAAAGTTTGATTTTGGAAAAACACCATCATTATGGAAACGTACACGCAGTAGAAAAATTACGCCAGTCCATTGAGATATGGTATGCTACAAGTGAATATTTGCGACAAGAAATGAATCCTAATTTTAGGATGACTGACCCTTTTAATCCAGTCCATATAATGTCTTTTTCGGGAGCTCGAGGAAATGCATCTCAAGTACACCAATTAGTAGGTATGAGAGGATTAATGTCAGATCCACAAGGACAAATGATTGATTTACCCATTCAAAGCAATTTACGTGAGGGGCTGTCCTTAACGGAATATATAATTTCTTGCTACGGAGCGCGGAAAGGAGTTGTGGATACTGCTGTACGAACATCGGATGCTGGATATCTTACACGTAGACTTGTTGAAGTAGTTCAACACATTGTTGTACGTAGAACCGATTGTGGAACCATCCGAGGGATTTTAGTGAGTCCTGGAAATAGGATGATTCCGGAAAGAATTTTTATCCAAACATTAATTGGTCGTGTATTAGCGGACGATATATATATGGGCCCGCGATGCATTGGCGTTCGAAATCAAGATATTGGTATTGGACTTATTAATCGATTCATAACCTTTCAAACACAACCAATATCTATTCGGACTCCCTTTACTTGTAGGAGTACATCTTGGATCTGCCGATTATGTTATGGACGAAGTCCTACTCACGGGGACCTGGTCGAATTGGGAGAAGCCGTAGGTATTATTGCGGGTCAATCTATTGGCGAACCGGGTACTCAACTAACATTAAGAACTTTTCATACCGGCGGAGTATTCACAGGGGGGACTGCAGAACATATACGAGCTCCTTCTAATGGCAAAATAAAATTCAATGAGGATTTGGTTCATCCCACACGTACACGCCATGGGCATCCTGCTTTTTTATGTTATATAGACTTGTATGTAACTATTGAGAGTGAGGATATTATACATAACGTCACTATTCCACCAAAAAGTTTACTTTTAGTTCAAAACGATCAATATGTAGAATCAGAACAAGTGATTGCTGAGATTCGCGCGGGAACATACACTCTTAATTTAAAAGAGAGAGTTCGAAAACATATTTATTCTGACTCAGAGGGAGAAATGCATTGGAGTACCGACGTGTACCATGCACCCGAATTTACATATAGTAATGTCCATCTCTTACCAAAAACAAGTCATTTATGGATATTATCAGGAGGTTCGTGCGGATGCAGTGTAGTCCCTTTTTCACTCTACAAGGATCAAGATCAAATTAACGTTCATTCTCTTTGTGTCGAAAGAAGATATATTTCTAGCCTTTCAGTAAATAATGATAAAGTGGGACAAAAATTTTATGGTCCGCATCTCTCTGGTAAAAACGAAAGCGGAATTCCTGATTATTCAGAACTTAATCCAATCCTATGTACGGGTCAATCTAATCTCACATATCCTGCTATTTTCCACGGTAATTCTGATTTATTGGCAAAGAGGCGAAGAAATGGATTCATCATTCAATTTGAATCACTTCAAGAACGAGAAAAAGAACAACGACCCCCTTCCGGTATTTCGATTGAAATACCCATAAATGGTATTTTTCGTAGAAATAGTATTCTTGCTTATTTCGATGATCCTCAATACAGAAGAAATAGTTCAGGAATTACTAAATATGGGACTATAGGGGTGCATTCAATCCTCAAAAAAGAGGATTTGATTGAGTATCGAGGAGTCAAAGACTTTAAGCCAAAATACCAAATGCAAATGAAAGTGGATCGATTTTTTTTCATTCCCGAGGAAGTGCATATTTTACCTGAATCTTCTTCCATAATGGTACGCAACAATAGTATCATTGGAGTAGCTACACGACTAACTTTAAGTATAAGAAGCCGAGTAGGCGGATTGGTCCGAGTGGAGAAAAAAAAAAAAAGGATTGAACTCAAAATATTTTCTGGAGATATACATTTTCCTGGAGAGATGGATAAGATATCCCGACACAATGGCATCTTGATACCACCAGAAAGAGTAAAAAAAAATTCTAAGAAATCAAAAAAATCGAAAAATTGGATTTATGTCCAGTGGATCACACCTACCAAGAAAAAGTATTTTGTTTTTGTTCGACCTGTAATCATATATGAACTAGCCGACGGTATAAATTTAGTAAAACTTTTCCCACAGGATCTATTGCAAGAAAGGGATAATCTGGAGCTTAGAGTTGTCAATTATATACTTTATGGAAATGGCAAACCAATTCGGGGAATTTCTGGCACAAGCATTCAATTAGTTCGGACTTGTTTATTGTTGAATTGGGACCGAGACAAAAAAAGCTCTTCTATCGAAGACGCGCGCGCTTCCTTTGTTGAAGTAAGTACAAATGGTCTGGTTCGAAATTTCCTACGAATAGACTTAGTGAAATCCGATACTGCGTATATCAGAAAAAGGAAAGATCCGTCAGGTTCAGGATTGATCTTTAATAATGAGTCAGATCGCACCAATATCAATCCATTTTTTTCTATTTCTTCCAAGACAAGGGTTCCACAATCTCCGAGTCAAAATCAAGGAACTATTCGTACGTTGTTGAATAGAAATAAAGAACGCCAATCTTTGATAATTTTGTCAGCATCGAATTGTTTGCAAATGGATCTATTCAACGATGTAAAAGATTATAATGTCATAAAAGAATCAAGTAAAAAGGATCCTCTAATTTCAATTAGGAATTCGTTAGGACCTTTAGGGGCGGCCCCTCAAATTGTGAATTTTTATTCATTTTATGACTTAATAACTCATAATCCGATCTCCCTAACTAAATATTTGCAACTTGCCAATTTAAAACAGACTTTTCAAGTACTTAAATATTATTTAATGGATGAAAACGGGGGGATTTTTAATTCCGATCCATGCAGTAACATCGTTTTCAATACATTTAATTTAAATTGGCATTTTCTGCATCATAATTATCACAATAATTATTGTGAAGAAAGAACTACAAGAATTAGTCTTGGACAGTTTTTTTTTGAAAATGTATGTATAGCCAAAAATAGACCACACCTAAAATCGGGTCAAATTATAATTGTTCAAGTTGATTCTGTAGTAATAAGATCAGCTAAGCCTTATTTGGCCACTTCAGGAGCAACTGTTCATCGCCATTATGGCGAAATCCTTTACGAAGGAGATACCTTAGTTACATTTATATATGAAAAATCACGATCTGGTGATATAACGCAGGGTCTTCCAAAAGTCGAACAAGTATTAGAAGTGCGTTCGATTGATTCAATATCGATGAGCCTAGAAAAGAGAATTGAGGGTTGGAACGAGCGTATAACAAGAATTCTTGGAATTCCTTGGGGATTTTTGATTGGTGCTGAACTAACGATAGTGCAAAGTCGTATCTCTTTGGTTAATAAGATCCAAAAGGTTTATCGATCCCAGGGGGTGGAGATCCATAATAGACATATCGAAATTATTGTACGTCAAATAACATCAAAAGTGTTGGTTTCAGAAGATGGAATGTCTAATGTTTTTTCACCTGGAGAACTCATTGGGTTGTTACGAGCGGAACGAACAGGGCGTGCTTTGGAAGAAGCGATCTGTTACCGAGCCGTATTATTGGGAATAACGAAAGCATCTCTAAATACTCAAAGTTTCATATCGGAAGCAAGTTTTCAAGAAACTGCTCGAGTTTTAGCAAAAGCCGCCCTCCGAGGTCGTATCGATTGGTTGAGAGGTTTGAAAGAGAACGTTGTTCTAGGAGGAATGATACCCGTTGGTACCGGATTCAGAGAATTAGCGCACCGTTCGAGGCAATATAACAATATTCCTTTAGAAACCCCCCAAAAAAAATTTTCGAGGGGGAAATGA

Protein sequence

MAERADLVFHNKVIDGTAIKRLISRLIDHFGMAYTSHILDQLKTLGFQQATATSISLGIDDLLTIPSKGWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFRMTDPFNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYIISCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIRGILVSPGNRMIPERIFIQTLIGRVLADDIYMGPRCIGVRNQDIGIGLINRFITFQTQPISIRTPFTCRSTSWICRLCYGRSPTHGDLVELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHIRAPSNGKIKFNEDLVHPTRTRHGHPAFLCYIDLYVTIESEDIIHNVTIPPKSLLLVQNDQYVESEQVIAEIRAGTYTLNLKERVRKHIYSDSEGEMHWSTDVYHAPEFTYSNVHLLPKTSHLWILSGGSCGCSVVPFSLYKDQDQINVHSLCVERRYISSLSVNNDKVGQKFYGPHLSGKNESGIPDYSELNPILCTGQSNLTYPAIFHGNSDLLAKRRRNGFIIQFESLQEREKEQRPPSGISIEIPINGIFRRNSILAYFDDPQYRRNSSGITKYGTIGVHSILKKEDLIEYRGVKDFKPKYQMQMKVDRFFFIPEEVHILPESSSIMVRNNSIIGVATRLTLSIRSRVGGLVRVEKKKKRIELKIFSGDIHFPGEMDKISRHNGILIPPERVKKNSKKSKKSKNWIYVQWITPTKKKYFVFVRPVIIYELADGINLVKLFPQDLLQERDNLELRVVNYILYGNGKPIRGISGTSIQLVRTCLLLNWDRDKKSSSIEDARASFVEVSTNGLVRNFLRIDLVKSDTAYIRKRKDPSGSGLIFNNESDRTNINPFFSISSKTRVPQSPSQNQGTIRTLLNRNKERQSLIILSASNCLQMDLFNDVKDYNVIKESSKKDPLISIRNSLGPLGAAPQIVNFYSFYDLITHNPISLTKYLQLANLKQTFQVLKYYLMDENGGIFNSDPCSNIVFNTFNLNWHFLHHNYHNNYCEERTTRISLGQFFFENVCIAKNRPHLKSGQIIIVQVDSVVIRSAKPYLATSGATVHRHYGEILYEGDTLVTFIYEKSRSGDITQGLPKVEQVLEVRSIDSISMSLEKRIEGWNERITRILGIPWGFLIGAELTIVQSRISLVNKIQKVYRSQGVEIHNRHIEIIVRQITSKVLVSEDGMSNVFSPGELIGLLRAERTGRALEEAICYRAVLLGITKASLNTQSFISEASFQETARVLAKAALRGRIDWLRGLKENVVLGGMIPVGTGFRELAHRSRQYNNIPLETPQKKFSRGK

Homology

[Close]

BLAST of PI0016027 vs. ExPASy Swiss-Prot
Match: Q4VZP3 (DNA-directed RNA polymerase subunit beta'' OS=Cucumis sativus OX=3659 GN=rpoC2 PE=3 SV=1)

HSP 1 Score: 2662.1 bits (6899), Expect = 0.0e+00
Identity = 1332/1356 (98.23%), Postives = 1339/1356 (98.75%), Query Frame = 0


Query: 1    MAERADLVFHNKVIDGTAIKRLISRLIDHFGMAYTSHILDQLKTLGFQQATATSISLGID 60
            MAERADLVFHNKVIDGTAIKRLISRLIDHFGMAYTSHILDQLKTLGFQQATATSISLGID
Sbjct: 5    MAERADLVFHNKVIDGTAIKRLISRLIDHFGMAYTSHILDQLKTLGFQQATATSISLGID 64

Query: 61   DLLTIPSKGWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFR 120
            DLLTIPSKGWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFR
Sbjct: 65   DLLTIPSKGWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFR 124

Query: 121  MTDPFNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYII 180
            MTDPFNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYII
Sbjct: 125  MTDPFNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYII 184

Query: 181  SCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIRGILVSPGNRMIPERIF 240
            SCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIRGILVSPGNRMIPERIF
Sbjct: 185  SCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIRGILVSPGNRMIPERIF 244

Query: 241  IQTLIGRVLADDIYMGPRCIGVRNQDIGIGLINRFITFQTQPISIRTPFTCRSTSWICRL 300
            IQTLIGRVLADDIYMGPRCIGVRNQDIGIGLINRFITFQTQPISIRTPFTCRSTSWICRL
Sbjct: 245  IQTLIGRVLADDIYMGPRCIGVRNQDIGIGLINRFITFQTQPISIRTPFTCRSTSWICRL 304

Query: 301  CYGRSPTHGDLVELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHIRAPSNGKI 360
            CYGRSPTHGDLVELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHIRAPSNGKI
Sbjct: 305  CYGRSPTHGDLVELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHIRAPSNGKI 364

Query: 361  KFNEDLVHPTRTRHGHPAFLCYIDLYVTIESEDIIHNVTIPPKSLLLVQNDQYVESEQVI 420
            KFNEDLVHPTRTRHGHPAFLCYIDLYVTIESEDIIHNVTIPPKSLLLVQNDQYVESEQVI
Sbjct: 365  KFNEDLVHPTRTRHGHPAFLCYIDLYVTIESEDIIHNVTIPPKSLLLVQNDQYVESEQVI 424

Query: 421  AEIRAGTYTLNLKERVRKHIYSDSEGEMHWSTDVYHAPEFTYSNVHLLPKTSHLWILSGG 480
            AEIRAGTYTLNLKERVRKHIYSDSEGEMHWSTDVYHAPEFTYSNVHLLPKTSHLWILSGG
Sbjct: 425  AEIRAGTYTLNLKERVRKHIYSDSEGEMHWSTDVYHAPEFTYSNVHLLPKTSHLWILSGG 484

Query: 481  SCGCSVVPFSLYKDQDQINVHSLCVERRYISSLSVNNDKVGQKFYGPHLSGKNESGIPDY 540
            SCGCS+VPFSLYKDQDQINVHSLCVERRYISSLSVNNDKVGQKFYGP LSGKNE+GIPDY
Sbjct: 485  SCGCSLVPFSLYKDQDQINVHSLCVERRYISSLSVNNDKVGQKFYGPDLSGKNENGIPDY 544

Query: 541  SELNPILCTGQSNLTYPAIFHGNSDLLAKRRRNGFIIQFESLQEREKEQRPPSGISIEIP 600
            SELNPILCTGQSNLTYPAIFHGNSDLLAKRRRNGFIIQFESLQEREKE RPPSGISIEIP
Sbjct: 545  SELNPILCTGQSNLTYPAIFHGNSDLLAKRRRNGFIIQFESLQEREKELRPPSGISIEIP 604

Query: 601  INGIFRRNSILAYFDDPQYRRNSSGITKYGTIGVHSILKKEDLIEYRGVKDFKPKYQMQM 660
            INGIFRRNSILA+FDDPQYRRNSSGITKYGTIGVHSILKKEDLIEYRGVKDFKPKYQMQM
Sbjct: 605  INGIFRRNSILAFFDDPQYRRNSSGITKYGTIGVHSILKKEDLIEYRGVKDFKPKYQMQM 664

Query: 661  KVDRFFFIPEEVHILPESSSIMVRNNSIIGVATRLTLSIRSRVGGLVRVEKKKKRIELKI 720
            KVDRFFFIPEEVHILPESSSIMVRNNSIIGVATRLTLSIRSRVGGLVRVEKKKKRIELKI
Sbjct: 665  KVDRFFFIPEEVHILPESSSIMVRNNSIIGVATRLTLSIRSRVGGLVRVEKKKKRIELKI 724

Query: 721  FSGDIHFPGEMDKISRHNGILIPPERVKKNSKKSKKSKNWIYVQWITPTKKKYFVFVRPV 780
            FSGDIHFPGEMDKISRHNGILIPPERVKKNSKKSKKSKNWIYVQWITPTKKKYFVFVRPV
Sbjct: 725  FSGDIHFPGEMDKISRHNGILIPPERVKKNSKKSKKSKNWIYVQWITPTKKKYFVFVRPV 784

Query: 781  IIYELADGINLVKLFPQDLLQERDNLELRVVNYILYGNGKPIRGISGTSIQLVRTCLLLN 840
            IIYELADGINLVKLFPQDLLQERDNLELRV NYILYGNGKPIRGISGTSIQLVRTCLLLN
Sbjct: 785  IIYELADGINLVKLFPQDLLQERDNLELRVANYILYGNGKPIRGISGTSIQLVRTCLLLN 844

Query: 841  WDRDKKSSSIEDARASFVEVSTNGLVRNFLRIDLVKSDTAYIRKRKDPSGSGLIFNNESD 900
            WDRDKKSSSIEDARASFVEVSTNGLVRNFLRIDL KSDTAYIRKRKDPSGSGLIFNNESD
Sbjct: 845  WDRDKKSSSIEDARASFVEVSTNGLVRNFLRIDLGKSDTAYIRKRKDPSGSGLIFNNESD 904

Query: 901  RTNINPFFSISSKTRVPQSPSQNQGTIRTLLNRNKERQSLIILSASNCLQMDLFNDVKDY 960
            RTNINPFFSI SKTRVPQSPSQNQGTIRTLLNRNKERQSLIILSASNCLQ+DLFNDVKDY
Sbjct: 905  RTNINPFFSIYSKTRVPQSPSQNQGTIRTLLNRNKERQSLIILSASNCLQIDLFNDVKDY 964

Query: 961  NVIKESSKKDPLISIRNSLGPLGAAPQIVNFYSFYDLITHNPISLTKYLQLANLKQTFQV 1020
            NVIKESSKKDPLISIRNSLGPLGAAPQIVNFYSFY LITHNPISLTKYLQL NLKQ FQV
Sbjct: 965  NVIKESSKKDPLISIRNSLGPLGAAPQIVNFYSFYYLITHNPISLTKYLQLDNLKQIFQV 1024

Query: 1021 LKYYLMDENGGIFNSDPCSNIVFNTFNLNWHFLHHNYHNNYCEERTTRISLGQFFFENVC 1080
            LKYYLMDENGGI NSDPC NIVFNTFNLNWHFLH NYHNNYCEE  TRISLGQFFFENVC
Sbjct: 1025 LKYYLMDENGGILNSDPCINIVFNTFNLNWHFLHDNYHNNYCEETPTRISLGQFFFENVC 1084

Query: 1081 IAKNRPHLKSGQIIIVQVDSVVIRSAKPYLATSGATVHRHYGEILYEGDTLVTFIYEKSR 1140
            IAKNRPHLKSGQIIIVQVDS+VIRSAKPYLATSGATVHRHYGEILYEGDTLVTFIYEKSR
Sbjct: 1085 IAKNRPHLKSGQIIIVQVDSLVIRSAKPYLATSGATVHRHYGEILYEGDTLVTFIYEKSR 1144

Query: 1141 SGDITQGLPKVEQVLEVRSIDSISMSLEKRIEGWNERITRILGIPWGFLIGAELTIVQSR 1200
            SGDITQGLPKVEQVLEVRSIDSISMSLEKRIEGWNERITRILGIPWGFLIGAELTIVQSR
Sbjct: 1145 SGDITQGLPKVEQVLEVRSIDSISMSLEKRIEGWNERITRILGIPWGFLIGAELTIVQSR 1204

Query: 1201 ISLVNKIQKVYRSQGVEIHNRHIEIIVRQITSKVLVSEDGMSNVFSPGELIGLLRAERTG 1260
            ISLVNKIQKVYRSQGVEIHNRHIEIIVRQITSKVLVSEDGMSNVFSPGELIGLLRAERTG
Sbjct: 1205 ISLVNKIQKVYRSQGVEIHNRHIEIIVRQITSKVLVSEDGMSNVFSPGELIGLLRAERTG 1264

Query: 1261 RALEEAICYRAVLLGITKASLNTQSFISEASFQETARVLAKAALRGRIDWLRGLKENVVL 1320
            RALEEAICYRAVLLGITKASLNTQSFISEASFQETARVLAKAALRGRIDWLRGLKENVVL
Sbjct: 1265 RALEEAICYRAVLLGITKASLNTQSFISEASFQETARVLAKAALRGRIDWLRGLKENVVL 1324

Query: 1321 GGMIPVGTGFRELAHRSRQYNNIPLETPQKKFSRGK 1357
            GGMIPVGTGFRELAHRSRQ+NNIPLETP KK   G+
Sbjct: 1325 GGMIPVGTGFRELAHRSRQHNNIPLETPPKKIFEGE 1360

[Close]

BLAST of PI0016027 vs. ExPASy Swiss-Prot
Match: B1NWE0 (DNA-directed RNA polymerase subunit beta'' OS=Manihot esculenta OX=3983 GN=rpoC2 PE=3 SV=1)

HSP 1 Score: 2283.8 bits (5917), Expect = 0.0e+00
Identity = 1153/1359 (84.84%), Postives = 1229/1359 (90.43%), Query Frame = 0


Query: 1    MAERADLVFHNKVIDGTAIKRLISRLIDHFGMAYTSHILDQLKTLGFQQATATSISLGID 60
            MAERA+LVFHNK IDGTAIKRLISRLIDHFGMAYTSHILDQ+KTLGFQQATATSISLGID
Sbjct: 5    MAERANLVFHNKAIDGTAIKRLISRLIDHFGMAYTSHILDQVKTLGFQQATATSISLGID 64

Query: 61   DLLTIPSKGWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFR 120
            DLLTIPSKGWLVQDAEQQSLILEKH+HYGNVHAVEKLRQSIEIWYATSEYLRQEMN NFR
Sbjct: 65   DLLTIPSKGWLVQDAEQQSLILEKHYHYGNVHAVEKLRQSIEIWYATSEYLRQEMNLNFR 124

Query: 121  MTDPFNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYII 180
            MT+PFNPVHIMSFSGARGN SQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYII
Sbjct: 125  MTEPFNPVHIMSFSGARGNTSQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYII 184

Query: 181  SCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIRGILVSPGNRMIPERIF 240
            SCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGT RGI VSP N M+PERIF
Sbjct: 185  SCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTARGISVSPRNGMMPERIF 244

Query: 241  IQTLIGRVLADDIYMGPRCIGVRNQDIGIGLINRFITFQTQPISIRTPFTCRSTSWICRL 300
            IQT IGRVLAD+IYMG RCI +RNQDIGIGL NRFITF+TQ ISIRTPFTCRSTSWICRL
Sbjct: 245  IQTFIGRVLADNIYMGLRCIAIRNQDIGIGLANRFITFRTQTISIRTPFTCRSTSWICRL 304

Query: 301  CYGRSPTHGDLVELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHIRAPSNGKI 360
            CYGRSPTHGDLVELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEH+RAPSNGKI
Sbjct: 305  CYGRSPTHGDLVELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHVRAPSNGKI 364

Query: 361  KFNEDLVHPTRTRHGHPAFLCYIDLYVTIESEDIIHNVTIPPKSLLLVQNDQYVESEQVI 420
            KFNEDLVHP RTRHGHPAFLCYIDLYVTI+S+DIIHNVTIPPKS LLVQNDQYVESEQVI
Sbjct: 365  KFNEDLVHPIRTRHGHPAFLCYIDLYVTIKSQDIIHNVTIPPKSFLLVQNDQYVESEQVI 424

Query: 421  AEIRAGTYTLNLKERVRKHIYSDSEGEMHWSTDVYHAPEFTYSNVHLLPKTSHLWILSGG 480
            AEIRAG YTLN KE+VRKHIYSDSEGEMHWSTDVYHAPEFTYSNVHLLPKTSHLWILSG 
Sbjct: 425  AEIRAGAYTLNFKEKVRKHIYSDSEGEMHWSTDVYHAPEFTYSNVHLLPKTSHLWILSGS 484

Query: 481  SCGCSVVPFSLYKDQDQINVHSLCVERRYISSLSVNNDKVGQKFYGPHLSGKNESGIPDY 540
            SC  S+VPFSL+KDQDQ+NVHSL V+RRYISS SVNND+V  KF+    SGK ESGIPDY
Sbjct: 485  SCRSSIVPFSLHKDQDQMNVHSLSVKRRYISSPSVNNDQVKHKFFSSDFSGKKESGIPDY 544

Query: 541  SELNPILCTGQSNLTYPAIFHGNSDLLAKRRRNGFIIQFESLQEREKEQRPPSGISIEIP 600
            SELN  +CTG  NL Y  I + NSDLLAKRRRN FII F+S+QEREKE    S ISIEIP
Sbjct: 545  SELNRSICTGHCNLIYSTILYKNSDLLAKRRRNKFIIPFQSIQEREKELMTQSAISIEIP 604

Query: 601  INGIFRRNSILAYFDDPQYRRNSSGITKYGTIGVHSILKKEDLIEYRGVKDFKPKYQMQM 660
            INGIFRRNS+ AYFDDPQYR+ SSGITKYG IGVHSI+KKEDLIEYRGVK+FKPKY  Q 
Sbjct: 605  INGIFRRNSVFAYFDDPQYRKKSSGITKYGAIGVHSIVKKEDLIEYRGVKEFKPKY--QT 664

Query: 661  KVDRFFFIPEEVHILPESSSIMVRNNSIIGVATRLTLSIRSRVGGLVRVEKKKKRIELKI 720
            KVDRFFFIPEEV+ILPESSS+MVRNNSIIGV T++ L+ RSRVGGLVRVE+KKK++ELKI
Sbjct: 665  KVDRFFFIPEEVYILPESSSLMVRNNSIIGVDTQIALNTRSRVGGLVRVERKKKKMELKI 724

Query: 721  FSGDIHFPGEMDKISRHNGILIPPERVKKNSKKSKKSKNWIYVQWITPTKKKYFVFVRPV 780
            FSGDIHFPGE DKISRH+ ILIPP  VK NSK+SKK KNWIY+Q ITPTKKKYFV VRPV
Sbjct: 725  FSGDIHFPGETDKISRHSDILIPPGTVKTNSKESKKVKNWIYIQRITPTKKKYFVLVRPV 784

Query: 781  IIYELADGINLVKLFPQDLLQERDNLELRVVNYILYGNGKPIRGISGTSIQLVRTCLLLN 840
            IIYE+A+GINL  LFPQDLLQE+DNL+LRVVNYILYG GKPIRGIS TSIQLVRTCL+LN
Sbjct: 785  IIYEIANGINLETLFPQDLLQEKDNLKLRVVNYILYGTGKPIRGISDTSIQLVRTCLVLN 844

Query: 841  WDRDKKSSSIEDARASFVEVSTNGLVRNFLRIDLVKSDTAYI-RKRKDPSGSGLIFNNES 900
            WD+DKKSSSIE+ARA+FVE+STNGL+R+FLRI+LVK   +YI RKR DPSGS  I NN S
Sbjct: 845  WDQDKKSSSIEEARAAFVEISTNGLIRDFLRINLVKFHISYIGRKRNDPSGSEPISNNGS 904

Query: 901  DRTNINPFFSISSKTRVPQSPSQNQGTIRTLLNRNKERQSLIILSASNCLQMDLFNDVKD 960
            DRTNINPF+ I SKTRV QS  QNQGTI TLLN NKE QSLIILS+SNC QMD FNDVK 
Sbjct: 905  DRTNINPFYPIYSKTRVQQSLKQNQGTISTLLNINKECQSLIILSSSNCFQMDPFNDVKH 964

Query: 961  YNVIKESSKKDPLISIRNSLGPLGAAPQIVNFYSFY--DLITHNPISLTKYLQLANLKQT 1020
            +NVIKES K+DP+I IRNSLGPLG A QI NFY FY  +LITHN IS+TKY +L NLKQT
Sbjct: 965  HNVIKESIKRDPIIPIRNSLGPLGTALQIANFYLFYHLNLITHNQISVTKYSKLYNLKQT 1024

Query: 1021 FQVLKYYLMDENGGIFNSDPCSNIVFNTFNLNWHFLHHNYHNNYCEERTTRISLGQFFFE 1080
            FQVLKYYLMDENG I N DPCSN V N FNLNW+FLHH    NYCE   T ISLGQF  E
Sbjct: 1025 FQVLKYYLMDENGRIVNPDPCSNSVLNPFNLNWYFLHH----NYCESFFTIISLGQFICE 1084

Query: 1081 NVCIAKNRPHLKSGQIIIVQVDSVVIRSAKPYLATSGATVHRHYGEILYEGDTLVTFIYE 1140
            N+C+AKN PHLKSGQ+IIV +DSVVIRSAKPYLAT GATVH HYGEILYEG+TLVTFIYE
Sbjct: 1085 NLCMAKNGPHLKSGQVIIVHIDSVVIRSAKPYLATPGATVHGHYGEILYEGNTLVTFIYE 1144

Query: 1141 KSRSGDITQGLPKVEQVLEVRSIDSISMSLEKRIEGWNERITRILGIPWGFLIGAELTIV 1200
            KSRSGDITQGLPKVEQVLEVRSIDSIS++LEKR+EGWNE ITRILGIPWGFLIG ELTIV
Sbjct: 1145 KSRSGDITQGLPKVEQVLEVRSIDSISINLEKRVEGWNECITRILGIPWGFLIGTELTIV 1204

Query: 1201 QSRISLVNKIQKVYRSQGVEIHNRHIEIIVRQITSKVLVSEDGMSNVFSPGELIGLLRAE 1260
            QSRISLVNKIQKVYRSQGV+IHNRHIEIIVRQITSKVLVSEDGMSNVFSPGELIGLLRAE
Sbjct: 1205 QSRISLVNKIQKVYRSQGVQIHNRHIEIIVRQITSKVLVSEDGMSNVFSPGELIGLLRAE 1264

Query: 1261 RTGRALEEAICYRAVLLGITKASLNTQSFISEASFQETARVLAKAALRGRIDWLRGLKEN 1320
            RTGRALEEAICY A+LLGIT+ASLNTQSFISEASFQET RVLAKAALRGRIDWL+GLKEN
Sbjct: 1265 RTGRALEEAICYGAILLGITRASLNTQSFISEASFQETTRVLAKAALRGRIDWLKGLKEN 1324

Query: 1321 VVLGGMIPVGTGFRELAHRSRQYNNIPLETPQKKFSRGK 1357
            VVLGGMIPVGTGF+ L   SRQ+ NIPL+T +K    G+
Sbjct: 1325 VVLGGMIPVGTGFKGLVQGSRQHKNIPLKTKKKNLFEGE 1357

[Close]

BLAST of PI0016027 vs. ExPASy Swiss-Prot
Match: Q0ZJ30 (DNA-directed RNA polymerase subunit beta'' OS=Vitis vinifera OX=29760 GN=rpoC2 PE=3 SV=1)

HSP 1 Score: 2283.4 bits (5916), Expect = 0.0e+00
Identity = 1155/1355 (85.24%), Postives = 1218/1355 (89.89%), Query Frame = 0


Query: 1    MAERADLVFHNKVIDGTAIKRLISRLIDHFGMAYTSHILDQLKTLGFQQATATSISLGID 60
            M ERA+LVFHNKVIDGTA+KRLISRLIDHFGMAYTSHILDQ+KTLGFQQATATSISLGID
Sbjct: 5    MTERANLVFHNKVIDGTAMKRLISRLIDHFGMAYTSHILDQVKTLGFQQATATSISLGID 64

Query: 61   DLLTIPSKGWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFR 120
            DLLTIPSKGWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMN NFR
Sbjct: 65   DLLTIPSKGWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNTNFR 124

Query: 121  MTDPFNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYII 180
            MTDPFNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYII
Sbjct: 125  MTDPFNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYII 184

Query: 181  SCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIRGILVSPGNRMIPERIF 240
            SCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIRGI VSP N MIPERIF
Sbjct: 185  SCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIRGISVSPRNGMIPERIF 244

Query: 241  IQTLIGRVLADDIYMGPRCIGVRNQDIGIGLINRFITFQTQPISIRTPFTCRSTSWICRL 300
            IQTLIGRVLADDIYMGPRCI +RNQDIGIGL+NRFITFQ Q ISIRTPFTC+STSWICRL
Sbjct: 245  IQTLIGRVLADDIYMGPRCIAIRNQDIGIGLVNRFITFQAQTISIRTPFTCKSTSWICRL 304

Query: 301  CYGRSPTHGDLVELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHIRAPSNGKI 360
            CYGRSPTHGDLVELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEH+RAPSNGKI
Sbjct: 305  CYGRSPTHGDLVELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHVRAPSNGKI 364

Query: 361  KFNEDLVHPTRTRHGHPAFLCYIDLYVTIESEDIIHNVTIPPKSLLLVQNDQYVESEQVI 420
            KFNED VHPTRTRHGHPAFLCYIDLYVTIESE IIHNV IPPKS LLVQNDQYVESEQVI
Sbjct: 365  KFNEDWVHPTRTRHGHPAFLCYIDLYVTIESEGIIHNVNIPPKSFLLVQNDQYVESEQVI 424

Query: 421  AEIRAGTYTLNLKERVRKHIYSDSEGEMHWSTDVYHAPEFTYSNVHLLPKTSHLWILSGG 480
            AEIRAGTYT N KERVRKHIYSDSEGEMHWSTDVYHAPEFTY NVHLLPKTSHLWILSGG
Sbjct: 425  AEIRAGTYTFNFKERVRKHIYSDSEGEMHWSTDVYHAPEFTYGNVHLLPKTSHLWILSGG 484

Query: 481  SCGCSVVPFSLYKDQDQINVHSLCVERRYISSLSVNNDKVGQKFYGPHLSGKNESGIPDY 540
            SC  S+VPFS++KDQDQ++V SL VERRYIS+ SV ND+V  +F+   LSGK E  IP Y
Sbjct: 485  SCRFSIVPFSIHKDQDQMSVRSLSVERRYISNPSVTNDQVIHEFFSSDLSGKKEGRIPAY 544

Query: 541  SELNPILCTGQSNLTYPAIFHGNSDLLAKRRRNGFIIQFESLQEREKEQRPPSGISIEIP 600
            SELN I+ TG+ NL  PAI H NSDLLAKRRRN FII F+S+QE EKE  PPSGISIEIP
Sbjct: 545  SELNRIIYTGRYNLIDPAILHENSDLLAKRRRNRFIIPFQSIQEGEKELMPPSGISIEIP 604

Query: 601  INGIFRRNSILAYFDDPQYRRNSSGITKYGTIGVHSILKKEDLIEYRGVKDFKPKYQMQM 660
            INGIFRRNSILAYFDDP+YRRNSSGITKYGTI  HSI+KKEDLIEYRGVK+FKPKY  QM
Sbjct: 605  INGIFRRNSILAYFDDPRYRRNSSGITKYGTIEAHSIVKKEDLIEYRGVKEFKPKY--QM 664

Query: 661  KVDRFFFIPEEVHILPESSSIMVRNNSIIGVATRLTLSIRSRVGGLVRVEKKKKRIELKI 720
            KVDRFFFIPEEVHILP S+SIMVRNNSIIGV TR+TL+ RSRV GLVRVE+KKKRIELKI
Sbjct: 665  KVDRFFFIPEEVHILPGSASIMVRNNSIIGVDTRITLNTRSRVSGLVRVERKKKRIELKI 724

Query: 721  FSGDIHFPGEMDKISRHNGILIPPERVKKNSKKSKKSKNWIYVQWITPTKKKYFVFVRPV 780
            FSGDI FPGE +KISRH GILIPP   KKNSK+SKK KNWIYVQ ITPTKKKYFV VRPV
Sbjct: 725  FSGDIQFPGETNKISRHIGILIPPGTRKKNSKESKKLKNWIYVQGITPTKKKYFVLVRPV 784

Query: 781  IIYELADGINLVKLFPQDLLQERDNLELRVVNYILYGNGKPIRGISGTSIQLVRTCLLLN 840
            + YE+ADGINL  LFPQDLLQERDN+ L+VVNYILYGNGKPIRGIS TSIQLVRTCL+LN
Sbjct: 785  VTYEIADGINLATLFPQDLLQERDNMHLQVVNYILYGNGKPIRGISDTSIQLVRTCLVLN 844

Query: 841  WDRDKKSSSIEDARASFVEVSTNGLVRNFLRIDLVKSDTAYIRKRKDPSGSGLIFNNESD 900
            W ++KKSS IE   ASF+EV TNGL+R+FL I+LVKS  +Y  KR DPS SGLI +N SD
Sbjct: 845  WYQEKKSSPIEKTHASFMEVRTNGLIRDFLTINLVKSYISYTGKRNDPSSSGLIADNGSD 904

Query: 901  RTNINPFFSISSKTRVP----QSPSQNQGTIRTLLNRNKERQSLIILSASNCLQMDLFND 960
             TNINPF+SI  K R+     Q   +NQGTIRTLLNRNKE QSLIILS+SNC +M  FND
Sbjct: 905  HTNINPFYSIYPKERIQQLLRQRQKKNQGTIRTLLNRNKECQSLIILSSSNCSRMGPFND 964

Query: 961  VKDYNVIKESSKKDPLISIRNSLGPLGAAPQIVNFYSFYDLITHNPISLTKYLQLANLKQ 1020
            VK +NVIKES KKD  I IRNSLGPLG A QI NFYSFY LITHN I +TKY QL N KQ
Sbjct: 965  VKYHNVIKESIKKDTPIPIRNSLGPLGTALQITNFYSFYHLITHNHILVTKYFQLDNFKQ 1024

Query: 1021 TFQVLKYYLMDENGGIFNSDPCSNIVFNTFNLNWHFLHHNYHNNYCEERTTRISLGQFFF 1080
            TFQ LKYYLMDENG  +N DPCSNI+ N FNLNW+FLHH    NYCEE +T ISLGQF  
Sbjct: 1025 TFQTLKYYLMDENGITYNPDPCSNIILNPFNLNWYFLHH----NYCEETSTIISLGQFIC 1084

Query: 1081 ENVCIAKNRPHLKSGQIIIVQVDSVVIRSAKPYLATSGATVHRHYGEILYEGDTLVTFIY 1140
            ENVCIAKN PHLKSGQ++IVQVDSVVIRSAKPYLAT GATVH HYGEILYEGDTLVTFIY
Sbjct: 1085 ENVCIAKNGPHLKSGQVLIVQVDSVVIRSAKPYLATLGATVHGHYGEILYEGDTLVTFIY 1144

Query: 1141 EKSRSGDITQGLPKVEQVLEVRSIDSISMSLEKRIEGWNERITRILGIPWGFLIGAELTI 1200
            EKSRSGDITQGLPKVEQVLEVRSIDSISM+LEKR+EGWNE ITRILGIPWGF IGAELTI
Sbjct: 1145 EKSRSGDITQGLPKVEQVLEVRSIDSISMNLEKRVEGWNEHITRILGIPWGFFIGAELTI 1204

Query: 1201 VQSRISLVNKIQKVYRSQGVEIHNRHIEIIVRQITSKVLVSEDGMSNVFSPGELIGLLRA 1260
             QSRISLVNKIQKVYRSQGV+IHNRHIEIIVRQITSKVLVSEDGMSNVFSPGELIGLLRA
Sbjct: 1205 AQSRISLVNKIQKVYRSQGVQIHNRHIEIIVRQITSKVLVSEDGMSNVFSPGELIGLLRA 1264

Query: 1261 ERTGRALEEAICYRAVLLGITKASLNTQSFISEASFQETARVLAKAALRGRIDWLRGLKE 1320
            ERTGRA EEAICYR +LLGIT+ASLNTQSFISEASFQETARVLAKAAL GRIDWL+GLKE
Sbjct: 1265 ERTGRAFEEAICYRTILLGITRASLNTQSFISEASFQETARVLAKAALWGRIDWLKGLKE 1324

Query: 1321 NVVLGGMIPVGTGFRELAHRSRQYNNIPLETPQKK 1352
            NVVLGGMIPVGTGF+ L HRSRQ+NNIPLE   KK
Sbjct: 1325 NVVLGGMIPVGTGFKGLVHRSRQHNNIPLEMETKK 1353

[Close]

BLAST of PI0016027 vs. ExPASy Swiss-Prot
Match: Q49L08 (DNA-directed RNA polymerase subunit beta'' OS=Eucalyptus globulus subsp. globulus OX=71271 GN=rpoC2 PE=3 SV=1)

HSP 1 Score: 2280.4 bits (5908), Expect = 0.0e+00
Identity = 1146/1359 (84.33%), Postives = 1228/1359 (90.36%), Query Frame = 0


Query: 1    MAERADLVFHNKVIDGTAIKRLISRLIDHFGMAYTSHILDQLKTLGFQQATATSISLGID 60
            MAER +LVFHNKVIDGTAIKRLISRLIDHFGMAYTSHILDQ+KTLGFQQATATSISLGID
Sbjct: 5    MAERVNLVFHNKVIDGTAIKRLISRLIDHFGMAYTSHILDQVKTLGFQQATATSISLGID 64

Query: 61   DLLTIPSKGWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFR 120
            DLLTIPSKGWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIE+WYATSEYLRQEMNPNFR
Sbjct: 65   DLLTIPSKGWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEVWYATSEYLRQEMNPNFR 124

Query: 121  MTDPFNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYII 180
            MTDPFNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYII
Sbjct: 125  MTDPFNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYII 184

Query: 181  SCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIRGILVSPGNRMIPERIF 240
            SCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIRG+ VSP N M+PERIF
Sbjct: 185  SCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIRGVSVSPRNGMMPERIF 244

Query: 241  IQTLIGRVLADDIYMGPRCIGVRNQDIGIGLINRFITFQTQPISIRTPFTCRSTSWICRL 300
            IQTLIGRVLADDIYMGPRCI +RNQDIGIGL+NRFITF+TQPISIRTPFTCRSTSWICRL
Sbjct: 245  IQTLIGRVLADDIYMGPRCIAIRNQDIGIGLVNRFITFRTQPISIRTPFTCRSTSWICRL 304

Query: 301  CYGRSPTHGDLVELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHIRAPSNGKI 360
            CYGRSPTHGDLVELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEH+RAPSNGKI
Sbjct: 305  CYGRSPTHGDLVELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHVRAPSNGKI 364

Query: 361  KFNEDLVHPTRTRHGHPAFLCYIDLYVTIESEDIIHNVTIPPKSLLLVQNDQYVESEQVI 420
            KFN+DLVHPTRTRHGHPAFLC IDLYVTIESEDI+HNVTIPPKS LLVQN+QYVESEQVI
Sbjct: 365  KFNDDLVHPTRTRHGHPAFLCSIDLYVTIESEDILHNVTIPPKSFLLVQNNQYVESEQVI 424

Query: 421  AEIRAGTYTLNLKERVRKHIYSDSEGEMHWSTDVYHAPEFTYSNVHLLPKTSHLWILSGG 480
            AEIRAGTYT NLKERVRKHIYS+SEGEMHWSTDVYHAPEFTYSNVHLLPKTSHLWILSGG
Sbjct: 425  AEIRAGTYTFNLKERVRKHIYSESEGEMHWSTDVYHAPEFTYSNVHLLPKTSHLWILSGG 484

Query: 481  SCGCSVVPFSLYKDQDQINVHSLCVERRYISSLSVNNDKVGQKFYGPHLSGK-NESGIPD 540
            SC  S VPFSLYKDQDQ+N+ S   ERRYISSLSVNND++  +      SGK  E  IPD
Sbjct: 485  SCRSSRVPFSLYKDQDQMNLRSTERERRYISSLSVNNDQMRYELCSSDFSGKIKEDRIPD 544

Query: 541  YSELNPILCTGQSNLTYPAIFHGNSDLLAKRRRNGFIIQFESLQEREKEQRPPSGISIEI 600
            YSELN I+     NL YP  F  NSDLLAKRRRN F+I  +S+QER+KE  P SGISIE+
Sbjct: 545  YSELNRIISIVHCNLKYPTTFDENSDLLAKRRRNRFLIPLQSIQERKKELMPHSGISIEL 604

Query: 601  PINGIFRRNSILAYFDDPQYRRNSSGITKYGTIGVHSILKKEDLIEYRGVKDFKPKYQMQ 660
            PINGI RRNSILAYFDDP+YRR SSGI KYGT+GVHS++KKEDLIEYRG+K+FK K   Q
Sbjct: 605  PINGILRRNSILAYFDDPRYRRKSSGIIKYGTLGVHSVVKKEDLIEYRGIKEFKQK--CQ 664

Query: 661  MKVDRFFFIPEEVHILPESSSIMVRNNSIIGVATRLTLSIRSRVGGLVRVEKKKKRIELK 720
            MK+D FFFIPEEVHI PESSSIMVRNNS+IGV TR+ L+ RSRVGGLVRVE+KKKRIELK
Sbjct: 665  MKLDPFFFIPEEVHIFPESSSIMVRNNSLIGVDTRIALNTRSRVGGLVRVERKKKRIELK 724

Query: 721  IFSGDIHFPGEMDKISRHNGILIPPERVKKNSKKSKKSKNWIYVQWITPTKKKYFVFVRP 780
            IFSGDIHFPGE DKISRH+GILIPP   K N K+SKK KNWIYVQ ITPTKKKYFV VRP
Sbjct: 725  IFSGDIHFPGETDKISRHSGILIPPGTGKTNFKESKKWKNWIYVQRITPTKKKYFVLVRP 784

Query: 781  VIIYELADGINLVKLFPQDLLQERDNLELRVVNYILYGNGKPIRGISGTSIQLVRTCLLL 840
            V+ YE+ DGINL  LFP DLLQERDN++LRVVNYI+Y NGKPIRGIS TSIQLVRTCL+L
Sbjct: 785  VVTYEVLDGINLATLFPPDLLQERDNMQLRVVNYIVYRNGKPIRGISDTSIQLVRTCLIL 844

Query: 841  NWDRDKKSSSIEDARASFVEVSTNGLVRNFLRIDLVKSDTAYIRKRKDPSGSGLI--FNN 900
            NWD+DKKSSSIE+A  SFVEVSTNGL+R+FLRIDLVK   +Y+RKR DPSGSGLI   +N
Sbjct: 845  NWDQDKKSSSIEEAHTSFVEVSTNGLIRDFLRIDLVKFPISYLRKRNDPSGSGLISDSDN 904

Query: 901  ESDRTNINPFFSISSKTRVPQSPSQNQGTIRTLLNRNKERQSLIILSASNCLQMDLFNDV 960
             SD TN NPF+   SKT++ Q  SQNQGTIRTLLN+NKE  SLIILS+SNC +M  FN  
Sbjct: 905  VSDHTNSNPFY---SKTKIQQLLSQNQGTIRTLLNKNKECPSLIILSSSNCFRMGPFNAG 964

Query: 961  KDYNVIKESSKKDPLISIRNSLGPLGAAPQIVNFYSFYDLITHNPISLTKYLQLANLKQT 1020
            K +NVIKES KKDP+I IRNS+GPLG   Q VNFYSFY LITHNPI +TKYLQL NLKQT
Sbjct: 965  KYHNVIKESIKKDPIIKIRNSIGPLGTVLQFVNFYSFYYLITHNPILVTKYLQLENLKQT 1024

Query: 1021 FQVLKYYLMDENGGIFNSDPCSNIVFNTFNLNWHFLHHNYHNNYCEERTTRISLGQFFFE 1080
            FQV+ YYLMDENG I N D CSNIV N+FNLNW+FLHHNY++NY EER+T ISLGQF  E
Sbjct: 1025 FQVINYYLMDENGRILNPDSCSNIVLNSFNLNWYFLHHNYYHNYFEERSTIISLGQFICE 1084

Query: 1081 NVCIAKNRPHLKSGQIIIVQVDSVVIRSAKPYLATSGATVHRHYGEILYEGDTLVTFIYE 1140
            NVCI+KN PHLKSGQ++IVQVDSVVIRSAKPYLAT GATVH HYGEILYEGDTLVTFIYE
Sbjct: 1085 NVCISKNGPHLKSGQVLIVQVDSVVIRSAKPYLATPGATVHGHYGEILYEGDTLVTFIYE 1144

Query: 1141 KSRSGDITQGLPKVEQVLEVRSIDSISMSLEKRIEGWNERITRILGIPWGFLIGAELTIV 1200
            KSRSGDITQGLPKVEQVLEVRSIDSISM+LEKRIEGWNE I +ILGIPWGFLIGAELTIV
Sbjct: 1145 KSRSGDITQGLPKVEQVLEVRSIDSISMNLEKRIEGWNEHIKKILGIPWGFLIGAELTIV 1204

Query: 1201 QSRISLVNKIQKVYRSQGVEIHNRHIEIIVRQITSKVLVSEDGMSNVFSPGELIGLLRAE 1260
            QSRISLVNKIQKVYRSQGV+IHNRHIEIIVRQITSKVLVSEDGMSNVF PGELIGLLRA 
Sbjct: 1205 QSRISLVNKIQKVYRSQGVQIHNRHIEIIVRQITSKVLVSEDGMSNVFLPGELIGLLRAA 1264

Query: 1261 RTGRALEEAICYRAVLLGITKASLNTQSFISEASFQETARVLAKAALRGRIDWLRGLKEN 1320
            RTGRALEE+ICYRA+LLGIT+ASLNTQSFISEASFQETARVLAKAALRGRIDWL+GLKEN
Sbjct: 1265 RTGRALEESICYRAILLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKEN 1324

Query: 1321 VVLGGMIPVGTGFRELAHRSRQYNNIPLETPQKKFSRGK 1357
            VV+GGMIPVGTGF+ L HRSRQ+ NIPL+T +K F  G+
Sbjct: 1325 VVIGGMIPVGTGFKGLVHRSRQHKNIPLKTKKKNFFEGE 1358

[Close]

BLAST of PI0016027 vs. ExPASy Swiss-Prot
Match: B1A925 (DNA-directed RNA polymerase subunit beta'' OS=Carica papaya OX=3649 GN=rpoC2 PE=3 SV=1)

HSP 1 Score: 2276.1 bits (5897), Expect = 0.0e+00
Identity = 1145/1352 (84.69%), Postives = 1229/1352 (90.90%), Query Frame = 0


Query: 1    MAERADLVFHNKVIDGTAIKRLISRLIDHFGMAYTSHILDQLKTLGFQQATATSISLGID 60
            MAERA+LVFHNKVIDGTAIKRLISRLID FGMAYTSHILDQ+KTLGFQQATATSISLGID
Sbjct: 1    MAERANLVFHNKVIDGTAIKRLISRLIDRFGMAYTSHILDQVKTLGFQQATATSISLGID 60

Query: 61   DLLTIPSKGWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFR 120
            DLLTIPSKGWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFR
Sbjct: 61   DLLTIPSKGWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFR 120

Query: 121  MTDPFNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYII 180
            +TDPFNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYII
Sbjct: 121  VTDPFNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYII 180

Query: 181  SCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIRGILVSPGNRMIPERIF 240
            SCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIRGI VSP NR +PERIF
Sbjct: 181  SCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIRGISVSPKNRTMPERIF 240

Query: 241  IQTLIGRVLADDIYMGPRCIGVRNQDIGIGLINRFITFQTQPISIRTPFTCRSTSWICRL 300
            IQTLIGRVLADDIYMGPRCI +RNQDIGIGL+NRFITF+TQ ISIRTPFTCRSTSWICRL
Sbjct: 241  IQTLIGRVLADDIYMGPRCIAIRNQDIGIGLVNRFITFRTQSISIRTPFTCRSTSWICRL 300

Query: 301  CYGRSPTHGDLVELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHIRAPSNGKI 360
            CYGRSPTHGDLVELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEH+R+PSNGKI
Sbjct: 301  CYGRSPTHGDLVELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHVRSPSNGKI 360

Query: 361  KFNEDLVHPTRTRHGHPAFLCYIDLYVTIESEDIIHNVTIPPKSLLLVQNDQYVESEQVI 420
            KFNEDLVHPTRTRHGHPAFLCYIDL V IESEDIIHNVTIPPKS LLVQNDQYVESEQVI
Sbjct: 361  KFNEDLVHPTRTRHGHPAFLCYIDLSVVIESEDIIHNVTIPPKSFLLVQNDQYVESEQVI 420

Query: 421  AEIRAGTYTLNLKERVRKHIYSDSEGEMHWSTDVYHAPEFTYSNVHLLPKTSHLWILSGG 480
            AEIRAGTYTLN KERVRKHIYS+SEGEMHWSTDVYHAPEFTYSNVHLLPKTSHLWILSGG
Sbjct: 421  AEIRAGTYTLNYKERVRKHIYSNSEGEMHWSTDVYHAPEFTYSNVHLLPKTSHLWILSGG 480

Query: 481  SCGCSVVPFSLYKDQDQINVHSLCVERRYISSLSVNNDKVGQKFYGPHLSGKNESGIPDY 540
            S   S+VPFSL+KDQDQ+N+HSL VE+  ISSL+VNND+   KF+  + S K + GIPDY
Sbjct: 481  SSRSSLVPFSLHKDQDQMNIHSLSVEQESISSLAVNNDQGRHKFFSSNFSDKKKCGIPDY 540

Query: 541  SELNPILCTGQSNLTYPAIFHGNSDLLAKRRRNGFIIQFESLQEREKEQRPPSGISIEIP 600
            SE + IL TG  NL Y A  H NSDLLAKRRRN FII F+S+QE+EKE  P SGISIEIP
Sbjct: 541  SEFHRILDTGHCNLIYFASLHENSDLLAKRRRNRFIIPFQSIQEQEKELMPRSGISIEIP 600

Query: 601  INGIFRRNSILAYFDDPQYRRNSSGITKYGTIGVHSILKKEDLIEYRGVKDFKPKYQMQM 660
            INGIFRRNSILA+FDDP+YRR SSGI KYGTIG HSI+KKED+IEYRGVK FK KY  QM
Sbjct: 601  INGIFRRNSILAFFDDPRYRRKSSGILKYGTIGAHSIVKKEDVIEYRGVKKFKTKY--QM 660

Query: 661  KVDRFFFIPEEVHILPESSSIMVRNNSIIGVATRLTLSIRSRVGGLVRVEKKKKRIELKI 720
            KVDRFFFIPEEVHILPESSSIMVRNNSIIGV TR+TL+IRS+VGGLVRVE+KKK IEL+I
Sbjct: 661  KVDRFFFIPEEVHILPESSSIMVRNNSIIGVDTRITLNIRSQVGGLVRVERKKKSIELQI 720

Query: 721  FSGDIHFPGEMDKISRHNGILIPPERVKKNSKKSKKSKNWIYVQWITPTKKKYFVFVRPV 780
            FSGDIHFPG+ DKISRH+GILIPP R K NSK+SKK KNWIYVQ ITPTKKKYFV VRPV
Sbjct: 721  FSGDIHFPGKTDKISRHSGILIPPGRGKTNSKESKKLKNWIYVQRITPTKKKYFVLVRPV 780

Query: 781  IIYELADGINLVKLFPQDLLQERDNLELRVVNYILYGNGKPIRGISGTSIQLVRTCLLLN 840
              YE+ADGINL  LFPQDL +E+DN++LRVVNYILYGNGKP+RGI  TSIQLVRTCL+LN
Sbjct: 781  ATYEIADGINLATLFPQDLFREKDNMQLRVVNYILYGNGKPVRGIFDTSIQLVRTCLVLN 840

Query: 841  WDRDKKSSSIEDARASFVEVSTNGLVRNFLRIDLVKSDT--AYIRKRKDPSGSGLIFNNE 900
            WD+D KSSS+E+ R  FVEVSTN L+R+FLRIDLVKS +  +YIRKR DPSGSGLI +N 
Sbjct: 841  WDQDNKSSSVEEVRTFFVEVSTNSLIRDFLRIDLVKSQSHISYIRKRNDPSGSGLISDNG 900

Query: 901  SDRTNINPFFSISSKTRVPQSPSQNQGTIRTLLNRNKERQSLIILSASNCLQMDLFNDVK 960
            SDR  INPF+    K R+ QS S+N GTIRTLLNRNKE QSLIILS+SNC QM  FN VK
Sbjct: 901  SDR--INPFY---YKERIQQSLSKNHGTIRTLLNRNKECQSLIILSSSNCFQMGPFNHVK 960

Query: 961  DYNVIKESSKKDPLISIRNSLGPLGAAPQIVNFYSFYDLITHNPISLTKYLQLANLKQTF 1020
             +NVIK+S KKDPLI IRNSLGP+G A QI NFYS Y LITHN IS+TKY QL NL Q F
Sbjct: 961  YHNVIKQSIKKDPLIPIRNSLGPVGTAIQIANFYSIYHLITHNQISVTKYFQLDNLNQIF 1020

Query: 1021 QVLKYYLMDENGGIFNSDPCSNIVFNTFNLNWHFLHHNYHNNYCEERTTRISLGQFFFEN 1080
            +V+KYYLMDE G ++N DPCSNI+ N FNLNW+FL+ NYH+NYCEE +T ISLGQF  EN
Sbjct: 1021 EVIKYYLMDETGRVYNPDPCSNIILNPFNLNWYFLYQNYHHNYCEETSTIISLGQFICEN 1080

Query: 1081 VCIAKNRPHLKSGQIIIVQVDSVVIRSAKPYLATSGATVHRHYGEILYEGDTLVTFIYEK 1140
            VC+AKN PHLKSGQ++IVQVDSVVIRSAKPYLAT GATVH HYGEILYEGDTLVTFIYEK
Sbjct: 1081 VCLAKNGPHLKSGQVLIVQVDSVVIRSAKPYLATPGATVHGHYGEILYEGDTLVTFIYEK 1140

Query: 1141 SRSGDITQGLPKVEQVLEVRSIDSISMSLEKRIEGWNERITRILGIPWGFLIGAELTIVQ 1200
            SRSGDITQGLPKVEQVLEVRSIDSIS++LEKR+EGWN+RITRILGIPWGFLIGAELTIVQ
Sbjct: 1141 SRSGDITQGLPKVEQVLEVRSIDSISLNLEKRVEGWNKRITRILGIPWGFLIGAELTIVQ 1200

Query: 1201 SRISLVNKIQKVYRSQGVEIHNRHIEIIVRQITSKVLVSEDGMSNVFSPGELIGLLRAER 1260
            SRISLVNKIQKVYRSQGV+IHNRHIEIIVRQITSKVLVSE+GMSNVF PGELIGLLRAER
Sbjct: 1201 SRISLVNKIQKVYRSQGVQIHNRHIEIIVRQITSKVLVSEEGMSNVFLPGELIGLLRAER 1260

Query: 1261 TGRALEEAICYRAVLLGITKASLNTQSFISEASFQETARVLAKAALRGRIDWLRGLKENV 1320
            TGRALEEAICYRA+LLGIT+ASLNTQSFISEASFQETARVLAKAALRGRIDWL+GLKENV
Sbjct: 1261 TGRALEEAICYRAILLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENV 1320

Query: 1321 VLGGMIPVGTGFRELAHRSRQYNNIPLETPQK 1351
            VLGGMIP GTGF+ L H SRQ+ +I LET +K
Sbjct: 1321 VLGGMIPAGTGFKGLVHCSRQHTSILLETKKK 1345

[Close]

BLAST of PI0016027 vs. ExPASy TrEMBL
Match: A0A6B9M016 (DNA-directed RNA polymerase subunit beta'' OS=Cucumis melo subsp. melo OX=412675 GN=rpoC2 PE=3 SV=1)

HSP 1 Score: 2666.0 bits (6909), Expect = 0.0e+00
Identity = 1336/1356 (98.53%), Postives = 1339/1356 (98.75%), Query Frame = 0


Query: 1    MAERADLVFHNKVIDGTAIKRLISRLIDHFGMAYTSHILDQLKTLGFQQATATSISLGID 60
            MAERADLVFHNKVIDGTAIKRLISRLIDHFGMAYTSHILDQLKTLGFQQATATSISLGID
Sbjct: 1    MAERADLVFHNKVIDGTAIKRLISRLIDHFGMAYTSHILDQLKTLGFQQATATSISLGID 60

Query: 61   DLLTIPSKGWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFR 120
            DLLTIPSKGWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFR
Sbjct: 61   DLLTIPSKGWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFR 120

Query: 121  MTDPFNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYII 180
            MTDPFNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYII
Sbjct: 121  MTDPFNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYII 180

Query: 181  SCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIRGILVSPGNRMIPERIF 240
            SCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIRGILVSPGNRMIPERIF
Sbjct: 181  SCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIRGILVSPGNRMIPERIF 240

Query: 241  IQTLIGRVLADDIYMGPRCIGVRNQDIGIGLINRFITFQTQPISIRTPFTCRSTSWICRL 300
            IQTLIGRVLADDIYMGPRCIGVRNQDIGIGLINRFITFQTQPISIRTPFTCRSTSWICRL
Sbjct: 241  IQTLIGRVLADDIYMGPRCIGVRNQDIGIGLINRFITFQTQPISIRTPFTCRSTSWICRL 300

Query: 301  CYGRSPTHGDLVELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHIRAPSNGKI 360
            CYGRSPTHGDLVELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHIRAPSNGKI
Sbjct: 301  CYGRSPTHGDLVELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHIRAPSNGKI 360

Query: 361  KFNEDLVHPTRTRHGHPAFLCYIDLYVTIESEDIIHNVTIPPKSLLLVQNDQYVESEQVI 420
            KFNEDLVHPTRTRHGHPAFLCYIDLYVTIESEDIIHNVTIPPKSLLLVQNDQYVESEQVI
Sbjct: 361  KFNEDLVHPTRTRHGHPAFLCYIDLYVTIESEDIIHNVTIPPKSLLLVQNDQYVESEQVI 420

Query: 421  AEIRAGTYTLNLKERVRKHIYSDSEGEMHWSTDVYHAPEFTYSNVHLLPKTSHLWILSGG 480
            AEIRAGTYTLNLKERVRKHIYSDSEGEMHWSTDVYHAPEFTYSNVHLLPKTSHLWILSGG
Sbjct: 421  AEIRAGTYTLNLKERVRKHIYSDSEGEMHWSTDVYHAPEFTYSNVHLLPKTSHLWILSGG 480

Query: 481  SCGCSVVPFSLYKDQDQINVHSLCVERRYISSLSVNNDKVGQKFYGPHLSGKNESGIPDY 540
            SCGCSVVPFSLYKDQDQINVHSLCVERRYISSLSVNNDKVGQKFYGPHLSGK+ESGIPDY
Sbjct: 481  SCGCSVVPFSLYKDQDQINVHSLCVERRYISSLSVNNDKVGQKFYGPHLSGKHESGIPDY 540

Query: 541  SELNPILCTGQSNLTYPAIFHGNSDLLAKRRRNGFIIQFESLQEREKEQRPPSGISIEIP 600
            SELNPI CTGQSNLTYPAIFHGNSDLLAKRRRNGFIIQFESLQER    RPPSGISIEIP
Sbjct: 541  SELNPIPCTGQSNLTYPAIFHGNSDLLAKRRRNGFIIQFESLQER---VRPPSGISIEIP 600

Query: 601  INGIFRRNSILAYFDDPQYRRNSSGITKYGTIGVHSILKKEDLIEYRGVKDFKPKYQMQM 660
            INGIFRRNSILAYFDDPQYRRNSSGITKYGTIGVHSILKKEDLIEYRGVKD KPKYQMQM
Sbjct: 601  INGIFRRNSILAYFDDPQYRRNSSGITKYGTIGVHSILKKEDLIEYRGVKDLKPKYQMQM 660

Query: 661  KVDRFFFIPEEVHILPESSSIMVRNNSIIGVATRLTLSIRSRVGGLVRVEKKKKRIELKI 720
            KVDRFFFIPEEVHILPESSSIMVRNNSIIGVATRLTLSIRSRVGGLVRVEKKKKRIELKI
Sbjct: 661  KVDRFFFIPEEVHILPESSSIMVRNNSIIGVATRLTLSIRSRVGGLVRVEKKKKRIELKI 720

Query: 721  FSGDIHFPGEMDKISRHNGILIPPERVKKNSKKSKKSKNWIYVQWITPTKKKYFVFVRPV 780
            FSGDIHFPGEMDKISRHNGILIPPERVKKNSKKSKKSKNWIYVQWITPTKKKYFVFVRPV
Sbjct: 721  FSGDIHFPGEMDKISRHNGILIPPERVKKNSKKSKKSKNWIYVQWITPTKKKYFVFVRPV 780

Query: 781  IIYELADGINLVKLFPQDLLQERDNLELRVVNYILYGNGKPIRGISGTSIQLVRTCLLLN 840
            IIYELADGINLVKLFPQDLLQERDNLELRVVNYILYGNGKPIRGISGTSIQLVRTCLLLN
Sbjct: 781  IIYELADGINLVKLFPQDLLQERDNLELRVVNYILYGNGKPIRGISGTSIQLVRTCLLLN 840

Query: 841  WDRDKKSSSIEDARASFVEVSTNGLVRNFLRIDLVKSDTAYIRKRKDPSGSGLIFNNESD 900
            WDRDKK SSIEDARASFVEVSTNGLVRNFLRIDLVKSDTAYIRKRKDPSGSGLIFNNESD
Sbjct: 841  WDRDKKRSSIEDARASFVEVSTNGLVRNFLRIDLVKSDTAYIRKRKDPSGSGLIFNNESD 900

Query: 901  RTNINPFFSISSKTRVPQSPSQNQGTIRTLLNRNKERQSLIILSASNCLQMDLFNDVKDY 960
            RTNINPFFSI SKTRVPQSPSQNQGTIRTLLNRNKERQSLIILSASNCLQMDLFNDVKDY
Sbjct: 901  RTNINPFFSIYSKTRVPQSPSQNQGTIRTLLNRNKERQSLIILSASNCLQMDLFNDVKDY 960

Query: 961  NVIKESSKKDPLISIRNSLGPLGAAPQIVNFYSFYDLITHNPISLTKYLQLANLKQTFQV 1020
            NVIKESSKKDPLISIRNSLGPLGAAPQIVNFYSFYDLITHNPISLTKYLQL NLKQTFQV
Sbjct: 961  NVIKESSKKDPLISIRNSLGPLGAAPQIVNFYSFYDLITHNPISLTKYLQLDNLKQTFQV 1020

Query: 1021 LKYYLMDENGGIFNSDPCSNIVFNTFNLNWHFLHHNYHNNYCEERTTRISLGQFFFENVC 1080
            LKYYLMDENGGIFNSDPCSNIVFNTFNLNWHFLHHNYHNNYCEER TRISLGQFFFENVC
Sbjct: 1021 LKYYLMDENGGIFNSDPCSNIVFNTFNLNWHFLHHNYHNNYCEERPTRISLGQFFFENVC 1080

Query: 1081 IAKNRPHLKSGQIIIVQVDSVVIRSAKPYLATSGATVHRHYGEILYEGDTLVTFIYEKSR 1140
            IAKNRPHLKSGQIIIVQVDSVVIRSAKPYLATSGATVHRHYGEILYEGDTLVTFIYEKSR
Sbjct: 1081 IAKNRPHLKSGQIIIVQVDSVVIRSAKPYLATSGATVHRHYGEILYEGDTLVTFIYEKSR 1140

Query: 1141 SGDITQGLPKVEQVLEVRSIDSISMSLEKRIEGWNERITRILGIPWGFLIGAELTIVQSR 1200
            SGDITQGLPKVEQVLEVRSIDSISMSLEKRIEGWNE ITRILGIPWGFLIGAEL IVQSR
Sbjct: 1141 SGDITQGLPKVEQVLEVRSIDSISMSLEKRIEGWNEHITRILGIPWGFLIGAELMIVQSR 1200

Query: 1201 ISLVNKIQKVYRSQGVEIHNRHIEIIVRQITSKVLVSEDGMSNVFSPGELIGLLRAERTG 1260
            ISLVNKIQKVYRSQGVEIHNRHIEIIVRQITSKVLVSEDGMSNVFSPGELIGLLRAERTG
Sbjct: 1201 ISLVNKIQKVYRSQGVEIHNRHIEIIVRQITSKVLVSEDGMSNVFSPGELIGLLRAERTG 1260

Query: 1261 RALEEAICYRAVLLGITKASLNTQSFISEASFQETARVLAKAALRGRIDWLRGLKENVVL 1320
            RALEEAICYRAVLLGITKASLNTQSFISEASFQETARVLAKAALRGRIDWLRGLKENVVL
Sbjct: 1261 RALEEAICYRAVLLGITKASLNTQSFISEASFQETARVLAKAALRGRIDWLRGLKENVVL 1320

Query: 1321 GGMIPVGTGFRELAHRSRQYNNIPLETPQKKFSRGK 1357
            GGMIPVGTGFRELAHRSRQ+NNIPLE P KK   G+
Sbjct: 1321 GGMIPVGTGFRELAHRSRQHNNIPLEPPPKKIFEGE 1353

[Close]

BLAST of PI0016027 vs. ExPASy TrEMBL
Match: A0A1P8C7P3 (DNA-directed RNA polymerase subunit beta'' OS=Cucumis x hytivus OX=442738 GN=rpoC2 PE=3 SV=1)

HSP 1 Score: 2665.2 bits (6907), Expect = 0.0e+00
Identity = 1333/1356 (98.30%), Postives = 1341/1356 (98.89%), Query Frame = 0


Query: 1    MAERADLVFHNKVIDGTAIKRLISRLIDHFGMAYTSHILDQLKTLGFQQATATSISLGID 60
            MAERADLVFHNKVIDGTAIKRLISRLIDHFGMAYTSHILDQLKTLGFQQATATSISLGID
Sbjct: 1    MAERADLVFHNKVIDGTAIKRLISRLIDHFGMAYTSHILDQLKTLGFQQATATSISLGID 60

Query: 61   DLLTIPSKGWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFR 120
            DLLTIPSKGWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFR
Sbjct: 61   DLLTIPSKGWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFR 120

Query: 121  MTDPFNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYII 180
            MTDPFNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYII
Sbjct: 121  MTDPFNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYII 180

Query: 181  SCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIRGILVSPGNRMIPERIF 240
            SCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIRGILVSPGNRMIPERIF
Sbjct: 181  SCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIRGILVSPGNRMIPERIF 240

Query: 241  IQTLIGRVLADDIYMGPRCIGVRNQDIGIGLINRFITFQTQPISIRTPFTCRSTSWICRL 300
            IQTLIGRVLADDIYMGPRCIGVRNQDIGIGLINRFITFQTQPISIRTPFTCRSTSWICRL
Sbjct: 241  IQTLIGRVLADDIYMGPRCIGVRNQDIGIGLINRFITFQTQPISIRTPFTCRSTSWICRL 300

Query: 301  CYGRSPTHGDLVELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHIRAPSNGKI 360
            CYGRSPTHGDLVELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHIRAPSNGKI
Sbjct: 301  CYGRSPTHGDLVELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHIRAPSNGKI 360

Query: 361  KFNEDLVHPTRTRHGHPAFLCYIDLYVTIESEDIIHNVTIPPKSLLLVQNDQYVESEQVI 420
            KFNEDLVHPTRTRHGHPAFLCYIDLYVTIESEDIIHNVTIPPKSLLLVQNDQYVESEQVI
Sbjct: 361  KFNEDLVHPTRTRHGHPAFLCYIDLYVTIESEDIIHNVTIPPKSLLLVQNDQYVESEQVI 420

Query: 421  AEIRAGTYTLNLKERVRKHIYSDSEGEMHWSTDVYHAPEFTYSNVHLLPKTSHLWILSGG 480
            AEIRAGTYTLNLKERVRKHIYSDSEGEMHWSTDVYHAPEFTYSNVHLLPKTSHLWILSGG
Sbjct: 421  AEIRAGTYTLNLKERVRKHIYSDSEGEMHWSTDVYHAPEFTYSNVHLLPKTSHLWILSGG 480

Query: 481  SCGCSVVPFSLYKDQDQINVHSLCVERRYISSLSVNNDKVGQKFYGPHLSGKNESGIPDY 540
            SCGCSVVPFSLYKDQDQINVHSLCVERRYISSLSVNNDKVGQKFYGP LSGKN+SGIPDY
Sbjct: 481  SCGCSVVPFSLYKDQDQINVHSLCVERRYISSLSVNNDKVGQKFYGPDLSGKNKSGIPDY 540

Query: 541  SELNPILCTGQSNLTYPAIFHGNSDLLAKRRRNGFIIQFESLQEREKEQRPPSGISIEIP 600
            SELNPILCTGQSNLTYPAIFHGNSDLLAKRRRNGFIIQFESLQEREKE RPPSGISIEIP
Sbjct: 541  SELNPILCTGQSNLTYPAIFHGNSDLLAKRRRNGFIIQFESLQEREKELRPPSGISIEIP 600

Query: 601  INGIFRRNSILAYFDDPQYRRNSSGITKYGTIGVHSILKKEDLIEYRGVKDFKPKYQMQM 660
            INGIFRRNSILA+FDDPQYRRNSSGITKYGTIGVHSILKKEDLIEYRGVKDFKPKYQMQM
Sbjct: 601  INGIFRRNSILAFFDDPQYRRNSSGITKYGTIGVHSILKKEDLIEYRGVKDFKPKYQMQM 660

Query: 661  KVDRFFFIPEEVHILPESSSIMVRNNSIIGVATRLTLSIRSRVGGLVRVEKKKKRIELKI 720
            KVDRFFFIPEEVHILPESSSIMVRNNSIIGVATRLTLSIRSRVGGLVRVEKKKKRIELKI
Sbjct: 661  KVDRFFFIPEEVHILPESSSIMVRNNSIIGVATRLTLSIRSRVGGLVRVEKKKKRIELKI 720

Query: 721  FSGDIHFPGEMDKISRHNGILIPPERVKKNSKKSKKSKNWIYVQWITPTKKKYFVFVRPV 780
            FSGDIHFPG+MDKISRHNGILIPPERVKKNSKKSKKSKNWIYVQWITPTKKKYFVFVRPV
Sbjct: 721  FSGDIHFPGDMDKISRHNGILIPPERVKKNSKKSKKSKNWIYVQWITPTKKKYFVFVRPV 780

Query: 781  IIYELADGINLVKLFPQDLLQERDNLELRVVNYILYGNGKPIRGISGTSIQLVRTCLLLN 840
            IIYELADGINLVKLFPQDLLQERDNLELRV NYILYGNGKPIRGISGTSIQLVRTCLLLN
Sbjct: 781  IIYELADGINLVKLFPQDLLQERDNLELRVANYILYGNGKPIRGISGTSIQLVRTCLLLN 840

Query: 841  WDRDKKSSSIEDARASFVEVSTNGLVRNFLRIDLVKSDTAYIRKRKDPSGSGLIFNNESD 900
            WDRDKKSSSIEDARASFVEVSTNGLVRNFLRIDL KSDTAYIRKRKDPSGSGLIFNNESD
Sbjct: 841  WDRDKKSSSIEDARASFVEVSTNGLVRNFLRIDLGKSDTAYIRKRKDPSGSGLIFNNESD 900

Query: 901  RTNINPFFSISSKTRVPQSPSQNQGTIRTLLNRNKERQSLIILSASNCLQMDLFNDVKDY 960
            RTNINPFFSI SKT+VPQSPSQNQGTIRTLLNRNKERQSLIILSASNCLQ+DLFNDVKDY
Sbjct: 901  RTNINPFFSIYSKTKVPQSPSQNQGTIRTLLNRNKERQSLIILSASNCLQIDLFNDVKDY 960

Query: 961  NVIKESSKKDPLISIRNSLGPLGAAPQIVNFYSFYDLITHNPISLTKYLQLANLKQTFQV 1020
            NVIKESSKKDPLISIRNSLGPLGAAPQIVNFYSFY LITHNPISLTKYLQL NLKQ FQV
Sbjct: 961  NVIKESSKKDPLISIRNSLGPLGAAPQIVNFYSFYYLITHNPISLTKYLQLDNLKQIFQV 1020

Query: 1021 LKYYLMDENGGIFNSDPCSNIVFNTFNLNWHFLHHNYHNNYCEERTTRISLGQFFFENVC 1080
            LKYYLMDENGGIFNSDPC NIVFNTFNLNWHFLH NYHNNYCEER TRISLGQF FENVC
Sbjct: 1021 LKYYLMDENGGIFNSDPCINIVFNTFNLNWHFLHDNYHNNYCEERPTRISLGQFLFENVC 1080

Query: 1081 IAKNRPHLKSGQIIIVQVDSVVIRSAKPYLATSGATVHRHYGEILYEGDTLVTFIYEKSR 1140
            IAKNRPHLKSGQIIIVQVDS+VIRSAKPYLATSGATVHRHYGEILYEGDTLVTFIYEKSR
Sbjct: 1081 IAKNRPHLKSGQIIIVQVDSLVIRSAKPYLATSGATVHRHYGEILYEGDTLVTFIYEKSR 1140

Query: 1141 SGDITQGLPKVEQVLEVRSIDSISMSLEKRIEGWNERITRILGIPWGFLIGAELTIVQSR 1200
            SGDITQGLPKVEQVLEVRSIDSISMSLEKRIEGWNERITRILGIPWGFLIGAELTIVQSR
Sbjct: 1141 SGDITQGLPKVEQVLEVRSIDSISMSLEKRIEGWNERITRILGIPWGFLIGAELTIVQSR 1200

Query: 1201 ISLVNKIQKVYRSQGVEIHNRHIEIIVRQITSKVLVSEDGMSNVFSPGELIGLLRAERTG 1260
            ISLVNKIQKVYRSQGVEIHNRHIEIIVRQITSKVLVSEDGMSNVFSPGELIGLLRAERTG
Sbjct: 1201 ISLVNKIQKVYRSQGVEIHNRHIEIIVRQITSKVLVSEDGMSNVFSPGELIGLLRAERTG 1260

Query: 1261 RALEEAICYRAVLLGITKASLNTQSFISEASFQETARVLAKAALRGRIDWLRGLKENVVL 1320
            RALEEAICYRAVLLGITKASLNTQSFISEASFQETARVLAKAALRGRIDWLRGLKENVVL
Sbjct: 1261 RALEEAICYRAVLLGITKASLNTQSFISEASFQETARVLAKAALRGRIDWLRGLKENVVL 1320

Query: 1321 GGMIPVGTGFRELAHRSRQYNNIPLETPQKKFSRGK 1357
            GGMIPVGTGFRELAHRSRQ+NNIPLETPQKK   G+
Sbjct: 1321 GGMIPVGTGFRELAHRSRQHNNIPLETPQKKIFEGE 1356

[Close]

BLAST of PI0016027 vs. ExPASy TrEMBL
Match: A0A4Y5RCY8 (DNA-directed RNA polymerase subunit beta'' OS=Cucumis hystrix OX=396994 GN=rpoC2 PE=3 SV=1)

HSP 1 Score: 2665.2 bits (6907), Expect = 0.0e+00
Identity = 1333/1356 (98.30%), Postives = 1341/1356 (98.89%), Query Frame = 0


Query: 1    MAERADLVFHNKVIDGTAIKRLISRLIDHFGMAYTSHILDQLKTLGFQQATATSISLGID 60
            MAERADLVFHNKVIDGTAIKRLISRLIDHFGMAYTSHILDQLKTLGFQQATATSISLGID
Sbjct: 1    MAERADLVFHNKVIDGTAIKRLISRLIDHFGMAYTSHILDQLKTLGFQQATATSISLGID 60

Query: 61   DLLTIPSKGWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFR 120
            DLLTIPSKGWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFR
Sbjct: 61   DLLTIPSKGWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFR 120

Query: 121  MTDPFNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYII 180
            MTDPFNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYII
Sbjct: 121  MTDPFNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYII 180

Query: 181  SCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIRGILVSPGNRMIPERIF 240
            SCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIRGILVSPGNRMIPERIF
Sbjct: 181  SCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIRGILVSPGNRMIPERIF 240

Query: 241  IQTLIGRVLADDIYMGPRCIGVRNQDIGIGLINRFITFQTQPISIRTPFTCRSTSWICRL 300
            IQTLIGRVLADDIYMGPRCIGVRNQDIGIGLINRFITFQTQPISIRTPFTCRSTSWICRL
Sbjct: 241  IQTLIGRVLADDIYMGPRCIGVRNQDIGIGLINRFITFQTQPISIRTPFTCRSTSWICRL 300

Query: 301  CYGRSPTHGDLVELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHIRAPSNGKI 360
            CYGRSPTHGDLVELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHIRAPSNGKI
Sbjct: 301  CYGRSPTHGDLVELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHIRAPSNGKI 360

Query: 361  KFNEDLVHPTRTRHGHPAFLCYIDLYVTIESEDIIHNVTIPPKSLLLVQNDQYVESEQVI 420
            KFNEDLVHPTRTRHGHPAFLCYIDLYVTIESEDIIHNVTIPPKSLLLVQNDQYVESEQVI
Sbjct: 361  KFNEDLVHPTRTRHGHPAFLCYIDLYVTIESEDIIHNVTIPPKSLLLVQNDQYVESEQVI 420

Query: 421  AEIRAGTYTLNLKERVRKHIYSDSEGEMHWSTDVYHAPEFTYSNVHLLPKTSHLWILSGG 480
            AEIRAGTYTLNLKERVRKHIYSDSEGEMHWSTDVYHAPEFTYSNVHLLPKTSHLWILSGG
Sbjct: 421  AEIRAGTYTLNLKERVRKHIYSDSEGEMHWSTDVYHAPEFTYSNVHLLPKTSHLWILSGG 480

Query: 481  SCGCSVVPFSLYKDQDQINVHSLCVERRYISSLSVNNDKVGQKFYGPHLSGKNESGIPDY 540
            SCGCSVVPFSLYKDQDQINVHSLCVERRYISSLSVNNDKVGQKFYGP LSGKN+SGIPDY
Sbjct: 481  SCGCSVVPFSLYKDQDQINVHSLCVERRYISSLSVNNDKVGQKFYGPDLSGKNKSGIPDY 540

Query: 541  SELNPILCTGQSNLTYPAIFHGNSDLLAKRRRNGFIIQFESLQEREKEQRPPSGISIEIP 600
            SELNPILCTGQSNLTYPAIFHGNSDLLAKRRRNGFIIQFESLQEREKE RPPSGISIEIP
Sbjct: 541  SELNPILCTGQSNLTYPAIFHGNSDLLAKRRRNGFIIQFESLQEREKELRPPSGISIEIP 600

Query: 601  INGIFRRNSILAYFDDPQYRRNSSGITKYGTIGVHSILKKEDLIEYRGVKDFKPKYQMQM 660
            INGIFRRNSILA+FDDPQYRRNSSGITKYGTIGVHSILKKEDLIEYRGVKDFKPKYQMQM
Sbjct: 601  INGIFRRNSILAFFDDPQYRRNSSGITKYGTIGVHSILKKEDLIEYRGVKDFKPKYQMQM 660

Query: 661  KVDRFFFIPEEVHILPESSSIMVRNNSIIGVATRLTLSIRSRVGGLVRVEKKKKRIELKI 720
            KVDRFFFIPEEVHILPESSSIMVRNNSIIGVATRLTLSIRSRVGGLVRVEKKKKRIELKI
Sbjct: 661  KVDRFFFIPEEVHILPESSSIMVRNNSIIGVATRLTLSIRSRVGGLVRVEKKKKRIELKI 720

Query: 721  FSGDIHFPGEMDKISRHNGILIPPERVKKNSKKSKKSKNWIYVQWITPTKKKYFVFVRPV 780
            FSGDIHFPG+MDKISRHNGILIPPERVKKNSKKSKKSKNWIYVQWITPTKKKYFVFVRPV
Sbjct: 721  FSGDIHFPGDMDKISRHNGILIPPERVKKNSKKSKKSKNWIYVQWITPTKKKYFVFVRPV 780

Query: 781  IIYELADGINLVKLFPQDLLQERDNLELRVVNYILYGNGKPIRGISGTSIQLVRTCLLLN 840
            IIYELADGINLVKLFPQDLLQERDNLELRV NYILYGNGKPIRGISGTSIQLVRTCLLLN
Sbjct: 781  IIYELADGINLVKLFPQDLLQERDNLELRVANYILYGNGKPIRGISGTSIQLVRTCLLLN 840

Query: 841  WDRDKKSSSIEDARASFVEVSTNGLVRNFLRIDLVKSDTAYIRKRKDPSGSGLIFNNESD 900
            WDRDKKSSSIEDARASFVEVSTNGLVRNFLRIDL KSDTAYIRKRKDPSGSGLIFNNESD
Sbjct: 841  WDRDKKSSSIEDARASFVEVSTNGLVRNFLRIDLGKSDTAYIRKRKDPSGSGLIFNNESD 900

Query: 901  RTNINPFFSISSKTRVPQSPSQNQGTIRTLLNRNKERQSLIILSASNCLQMDLFNDVKDY 960
            RTNINPFFSI SKT+VPQSPSQNQGTIRTLLNRNKERQSLIILSASNCLQ+DLFNDVKDY
Sbjct: 901  RTNINPFFSIYSKTKVPQSPSQNQGTIRTLLNRNKERQSLIILSASNCLQIDLFNDVKDY 960

Query: 961  NVIKESSKKDPLISIRNSLGPLGAAPQIVNFYSFYDLITHNPISLTKYLQLANLKQTFQV 1020
            NVIKESSKKDPLISIRNSLGPLGAAPQIVNFYSFY LITHNPISLTKYLQL NLKQ FQV
Sbjct: 961  NVIKESSKKDPLISIRNSLGPLGAAPQIVNFYSFYYLITHNPISLTKYLQLDNLKQIFQV 1020

Query: 1021 LKYYLMDENGGIFNSDPCSNIVFNTFNLNWHFLHHNYHNNYCEERTTRISLGQFFFENVC 1080
            LKYYLMDENGGIFNSDPC NIVFNTFNLNWHFLH NYHNNYCEER TRISLGQF FENVC
Sbjct: 1021 LKYYLMDENGGIFNSDPCINIVFNTFNLNWHFLHDNYHNNYCEERPTRISLGQFLFENVC 1080

Query: 1081 IAKNRPHLKSGQIIIVQVDSVVIRSAKPYLATSGATVHRHYGEILYEGDTLVTFIYEKSR 1140
            IAKNRPHLKSGQIIIVQVDS+VIRSAKPYLATSGATVHRHYGEILYEGDTLVTFIYEKSR
Sbjct: 1081 IAKNRPHLKSGQIIIVQVDSLVIRSAKPYLATSGATVHRHYGEILYEGDTLVTFIYEKSR 1140

Query: 1141 SGDITQGLPKVEQVLEVRSIDSISMSLEKRIEGWNERITRILGIPWGFLIGAELTIVQSR 1200
            SGDITQGLPKVEQVLEVRSIDSISMSLEKRIEGWNERITRILGIPWGFLIGAELTIVQSR
Sbjct: 1141 SGDITQGLPKVEQVLEVRSIDSISMSLEKRIEGWNERITRILGIPWGFLIGAELTIVQSR 1200

Query: 1201 ISLVNKIQKVYRSQGVEIHNRHIEIIVRQITSKVLVSEDGMSNVFSPGELIGLLRAERTG 1260
            ISLVNKIQKVYRSQGVEIHNRHIEIIVRQITSKVLVSEDGMSNVFSPGELIGLLRAERTG
Sbjct: 1201 ISLVNKIQKVYRSQGVEIHNRHIEIIVRQITSKVLVSEDGMSNVFSPGELIGLLRAERTG 1260

Query: 1261 RALEEAICYRAVLLGITKASLNTQSFISEASFQETARVLAKAALRGRIDWLRGLKENVVL 1320
            RALEEAICYRAVLLGITKASLNTQSFISEASFQETARVLAKAALRGRIDWLRGLKENVVL
Sbjct: 1261 RALEEAICYRAVLLGITKASLNTQSFISEASFQETARVLAKAALRGRIDWLRGLKENVVL 1320

Query: 1321 GGMIPVGTGFRELAHRSRQYNNIPLETPQKKFSRGK 1357
            GGMIPVGTGFRELAHRSRQ+NNIPLETPQKK   G+
Sbjct: 1321 GGMIPVGTGFRELAHRSRQHNNIPLETPQKKIFEGE 1356

[Close]

BLAST of PI0016027 vs. ExPASy TrEMBL
Match: A0A218KG46 (DNA-directed RNA polymerase subunit beta'' OS=Cucumis sativus var. hardwickii OX=319220 GN=rpoC2 PE=3 SV=1)

HSP 1 Score: 2662.1 bits (6899), Expect = 0.0e+00
Identity = 1332/1356 (98.23%), Postives = 1339/1356 (98.75%), Query Frame = 0


Query: 1    MAERADLVFHNKVIDGTAIKRLISRLIDHFGMAYTSHILDQLKTLGFQQATATSISLGID 60
            MAERADLVFHNKVIDGTAIKRLISRLIDHFGMAYTSHILDQLKTLGFQQATATSISLGID
Sbjct: 1    MAERADLVFHNKVIDGTAIKRLISRLIDHFGMAYTSHILDQLKTLGFQQATATSISLGID 60

Query: 61   DLLTIPSKGWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFR 120
            DLLTIPSKGWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFR
Sbjct: 61   DLLTIPSKGWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFR 120

Query: 121  MTDPFNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYII 180
            MTDPFNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYII
Sbjct: 121  MTDPFNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYII 180

Query: 181  SCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIRGILVSPGNRMIPERIF 240
            SCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIRGILVSPGNRMIPERIF
Sbjct: 181  SCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIRGILVSPGNRMIPERIF 240

Query: 241  IQTLIGRVLADDIYMGPRCIGVRNQDIGIGLINRFITFQTQPISIRTPFTCRSTSWICRL 300
            IQTLIGRVLADDIYMGPRCIGVRNQDIGIGLINRFITFQTQPISIRTPFTCRSTSWICRL
Sbjct: 241  IQTLIGRVLADDIYMGPRCIGVRNQDIGIGLINRFITFQTQPISIRTPFTCRSTSWICRL 300

Query: 301  CYGRSPTHGDLVELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHIRAPSNGKI 360
            CYGRSPTHGDLVELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHIRAPSNGKI
Sbjct: 301  CYGRSPTHGDLVELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHIRAPSNGKI 360

Query: 361  KFNEDLVHPTRTRHGHPAFLCYIDLYVTIESEDIIHNVTIPPKSLLLVQNDQYVESEQVI 420
            KFNEDLVHPTRTRHGHPAFLCYIDLYVTIESEDIIHNVTIPPKSLLLVQNDQYVESEQVI
Sbjct: 361  KFNEDLVHPTRTRHGHPAFLCYIDLYVTIESEDIIHNVTIPPKSLLLVQNDQYVESEQVI 420

Query: 421  AEIRAGTYTLNLKERVRKHIYSDSEGEMHWSTDVYHAPEFTYSNVHLLPKTSHLWILSGG 480
            AEIRAGTYTLNLKERVRKHIYSDSEGEMHWSTDVYHAPEFTYSNVHLLPKTSHLWILSGG
Sbjct: 421  AEIRAGTYTLNLKERVRKHIYSDSEGEMHWSTDVYHAPEFTYSNVHLLPKTSHLWILSGG 480

Query: 481  SCGCSVVPFSLYKDQDQINVHSLCVERRYISSLSVNNDKVGQKFYGPHLSGKNESGIPDY 540
            SCGCS+VPFSLYKDQDQINVHSLCVERRYISSLSVNNDKVGQKFYGP LSGKNE+GIPDY
Sbjct: 481  SCGCSLVPFSLYKDQDQINVHSLCVERRYISSLSVNNDKVGQKFYGPDLSGKNENGIPDY 540

Query: 541  SELNPILCTGQSNLTYPAIFHGNSDLLAKRRRNGFIIQFESLQEREKEQRPPSGISIEIP 600
            SELNPILCTGQSNLTYPAIFHGNSDLLAKRRRNGFIIQFESLQEREKE RPPSGISIEIP
Sbjct: 541  SELNPILCTGQSNLTYPAIFHGNSDLLAKRRRNGFIIQFESLQEREKELRPPSGISIEIP 600

Query: 601  INGIFRRNSILAYFDDPQYRRNSSGITKYGTIGVHSILKKEDLIEYRGVKDFKPKYQMQM 660
            INGIFRRNSILA+FDDPQYRRNSSGITKYGTIGVHSILKKEDLIEYRGVKDFKPKYQMQM
Sbjct: 601  INGIFRRNSILAFFDDPQYRRNSSGITKYGTIGVHSILKKEDLIEYRGVKDFKPKYQMQM 660

Query: 661  KVDRFFFIPEEVHILPESSSIMVRNNSIIGVATRLTLSIRSRVGGLVRVEKKKKRIELKI 720
            KVDRFFFIPEEVHILPESSSIMVRNNSIIGVATRLTLSIRSRVGGLVRVEKKKKRIELKI
Sbjct: 661  KVDRFFFIPEEVHILPESSSIMVRNNSIIGVATRLTLSIRSRVGGLVRVEKKKKRIELKI 720

Query: 721  FSGDIHFPGEMDKISRHNGILIPPERVKKNSKKSKKSKNWIYVQWITPTKKKYFVFVRPV 780
            FSGDIHFPGEMDKISRHNGILIPPERVKKNSKKSKKSKNWIYVQWITPTKKKYFVFVRPV
Sbjct: 721  FSGDIHFPGEMDKISRHNGILIPPERVKKNSKKSKKSKNWIYVQWITPTKKKYFVFVRPV 780

Query: 781  IIYELADGINLVKLFPQDLLQERDNLELRVVNYILYGNGKPIRGISGTSIQLVRTCLLLN 840
            IIYELADGINLVKLFPQDLLQERDNLELRV NYILYGNGKPIRGISGTSIQLVRTCLLLN
Sbjct: 781  IIYELADGINLVKLFPQDLLQERDNLELRVANYILYGNGKPIRGISGTSIQLVRTCLLLN 840

Query: 841  WDRDKKSSSIEDARASFVEVSTNGLVRNFLRIDLVKSDTAYIRKRKDPSGSGLIFNNESD 900
            WDRDKKSSSIEDARASFVEVSTNGLVRNFLRIDL KSDTAYIRKRKDPSGSGLIFNNESD
Sbjct: 841  WDRDKKSSSIEDARASFVEVSTNGLVRNFLRIDLGKSDTAYIRKRKDPSGSGLIFNNESD 900

Query: 901  RTNINPFFSISSKTRVPQSPSQNQGTIRTLLNRNKERQSLIILSASNCLQMDLFNDVKDY 960
            RTNINPFFSI SKTRVPQSPSQNQGTIRTLLNRNKERQSLIILSASNCLQ+DLFNDVKDY
Sbjct: 901  RTNINPFFSIYSKTRVPQSPSQNQGTIRTLLNRNKERQSLIILSASNCLQIDLFNDVKDY 960

Query: 961  NVIKESSKKDPLISIRNSLGPLGAAPQIVNFYSFYDLITHNPISLTKYLQLANLKQTFQV 1020
            NVIKESSKKDPLISIRNSLGPLGAAPQIVNFYSFY LITHNPISLTKYLQL NLKQ FQV
Sbjct: 961  NVIKESSKKDPLISIRNSLGPLGAAPQIVNFYSFYYLITHNPISLTKYLQLDNLKQIFQV 1020

Query: 1021 LKYYLMDENGGIFNSDPCSNIVFNTFNLNWHFLHHNYHNNYCEERTTRISLGQFFFENVC 1080
            LKYYLMDENGGI NSDPC NIVFNTFNLNWHFLH NYHNNYCEE  TRISLGQFFFENVC
Sbjct: 1021 LKYYLMDENGGILNSDPCINIVFNTFNLNWHFLHDNYHNNYCEETPTRISLGQFFFENVC 1080

Query: 1081 IAKNRPHLKSGQIIIVQVDSVVIRSAKPYLATSGATVHRHYGEILYEGDTLVTFIYEKSR 1140
            IAKNRPHLKSGQIIIVQVDS+VIRSAKPYLATSGATVHRHYGEILYEGDTLVTFIYEKSR
Sbjct: 1081 IAKNRPHLKSGQIIIVQVDSLVIRSAKPYLATSGATVHRHYGEILYEGDTLVTFIYEKSR 1140

Query: 1141 SGDITQGLPKVEQVLEVRSIDSISMSLEKRIEGWNERITRILGIPWGFLIGAELTIVQSR 1200
            SGDITQGLPKVEQVLEVRSIDSISMSLEKRIEGWNERITRILGIPWGFLIGAELTIVQSR
Sbjct: 1141 SGDITQGLPKVEQVLEVRSIDSISMSLEKRIEGWNERITRILGIPWGFLIGAELTIVQSR 1200

Query: 1201 ISLVNKIQKVYRSQGVEIHNRHIEIIVRQITSKVLVSEDGMSNVFSPGELIGLLRAERTG 1260
            ISLVNKIQKVYRSQGVEIHNRHIEIIVRQITSKVLVSEDGMSNVFSPGELIGLLRAERTG
Sbjct: 1201 ISLVNKIQKVYRSQGVEIHNRHIEIIVRQITSKVLVSEDGMSNVFSPGELIGLLRAERTG 1260

Query: 1261 RALEEAICYRAVLLGITKASLNTQSFISEASFQETARVLAKAALRGRIDWLRGLKENVVL 1320
            RALEEAICYRAVLLGITKASLNTQSFISEASFQETARVLAKAALRGRIDWLRGLKENVVL
Sbjct: 1261 RALEEAICYRAVLLGITKASLNTQSFISEASFQETARVLAKAALRGRIDWLRGLKENVVL 1320

Query: 1321 GGMIPVGTGFRELAHRSRQYNNIPLETPQKKFSRGK 1357
            GGMIPVGTGFRELAHRSRQ+NNIPLETP KK   G+
Sbjct: 1321 GGMIPVGTGFRELAHRSRQHNNIPLETPPKKIFEGE 1356

[Close]

BLAST of PI0016027 vs. ExPASy TrEMBL
Match: A0A1X9Q1J9 (DNA-directed RNA polymerase subunit beta'' OS=Cucumis sativus OX=3659 GN=rpoC2 PE=3 SV=1)

HSP 1 Score: 2662.1 bits (6899), Expect = 0.0e+00
Identity = 1332/1356 (98.23%), Postives = 1339/1356 (98.75%), Query Frame = 0


Query: 1    MAERADLVFHNKVIDGTAIKRLISRLIDHFGMAYTSHILDQLKTLGFQQATATSISLGID 60
            MAERADLVFHNKVIDGTAIKRLISRLIDHFGMAYTSHILDQLKTLGFQQATATSISLGID
Sbjct: 5    MAERADLVFHNKVIDGTAIKRLISRLIDHFGMAYTSHILDQLKTLGFQQATATSISLGID 64

Query: 61   DLLTIPSKGWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFR 120
            DLLTIPSKGWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFR
Sbjct: 65   DLLTIPSKGWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFR 124

Query: 121  MTDPFNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYII 180
            MTDPFNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYII
Sbjct: 125  MTDPFNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYII 184

Query: 181  SCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIRGILVSPGNRMIPERIF 240
            SCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIRGILVSPGNRMIPERIF
Sbjct: 185  SCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIRGILVSPGNRMIPERIF 244

Query: 241  IQTLIGRVLADDIYMGPRCIGVRNQDIGIGLINRFITFQTQPISIRTPFTCRSTSWICRL 300
            IQTLIGRVLADDIYMGPRCIGVRNQDIGIGLINRFITFQTQPISIRTPFTCRSTSWICRL
Sbjct: 245  IQTLIGRVLADDIYMGPRCIGVRNQDIGIGLINRFITFQTQPISIRTPFTCRSTSWICRL 304

Query: 301  CYGRSPTHGDLVELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHIRAPSNGKI 360
            CYGRSPTHGDLVELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHIRAPSNGKI
Sbjct: 305  CYGRSPTHGDLVELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHIRAPSNGKI 364

Query: 361  KFNEDLVHPTRTRHGHPAFLCYIDLYVTIESEDIIHNVTIPPKSLLLVQNDQYVESEQVI 420
            KFNEDLVHPTRTRHGHPAFLCYIDLYVTIESEDIIHNVTIPPKSLLLVQNDQYVESEQVI
Sbjct: 365  KFNEDLVHPTRTRHGHPAFLCYIDLYVTIESEDIIHNVTIPPKSLLLVQNDQYVESEQVI 424

Query: 421  AEIRAGTYTLNLKERVRKHIYSDSEGEMHWSTDVYHAPEFTYSNVHLLPKTSHLWILSGG 480
            AEIRAGTYTLNLKERVRKHIYSDSEGEMHWSTDVYHAPEFTYSNVHLLPKTSHLWILSGG
Sbjct: 425  AEIRAGTYTLNLKERVRKHIYSDSEGEMHWSTDVYHAPEFTYSNVHLLPKTSHLWILSGG 484

Query: 481  SCGCSVVPFSLYKDQDQINVHSLCVERRYISSLSVNNDKVGQKFYGPHLSGKNESGIPDY 540
            SCGCS+VPFSLYKDQDQINVHSLCVERRYISSLSVNNDKVGQKFYGP LSGKNE+GIPDY
Sbjct: 485  SCGCSLVPFSLYKDQDQINVHSLCVERRYISSLSVNNDKVGQKFYGPDLSGKNENGIPDY 544

Query: 541  SELNPILCTGQSNLTYPAIFHGNSDLLAKRRRNGFIIQFESLQEREKEQRPPSGISIEIP 600
            SELNPILCTGQSNLTYPAIFHGNSDLLAKRRRNGFIIQFESLQEREKE RPPSGISIEIP
Sbjct: 545  SELNPILCTGQSNLTYPAIFHGNSDLLAKRRRNGFIIQFESLQEREKELRPPSGISIEIP 604

Query: 601  INGIFRRNSILAYFDDPQYRRNSSGITKYGTIGVHSILKKEDLIEYRGVKDFKPKYQMQM 660
            INGIFRRNSILA+FDDPQYRRNSSGITKYGTIGVHSILKKEDLIEYRGVKDFKPKYQMQM
Sbjct: 605  INGIFRRNSILAFFDDPQYRRNSSGITKYGTIGVHSILKKEDLIEYRGVKDFKPKYQMQM 664

Query: 661  KVDRFFFIPEEVHILPESSSIMVRNNSIIGVATRLTLSIRSRVGGLVRVEKKKKRIELKI 720
            KVDRFFFIPEEVHILPESSSIMVRNNSIIGVATRLTLSIRSRVGGLVRVEKKKKRIELKI
Sbjct: 665  KVDRFFFIPEEVHILPESSSIMVRNNSIIGVATRLTLSIRSRVGGLVRVEKKKKRIELKI 724

Query: 721  FSGDIHFPGEMDKISRHNGILIPPERVKKNSKKSKKSKNWIYVQWITPTKKKYFVFVRPV 780
            FSGDIHFPGEMDKISRHNGILIPPERVKKNSKKSKKSKNWIYVQWITPTKKKYFVFVRPV
Sbjct: 725  FSGDIHFPGEMDKISRHNGILIPPERVKKNSKKSKKSKNWIYVQWITPTKKKYFVFVRPV 784

Query: 781  IIYELADGINLVKLFPQDLLQERDNLELRVVNYILYGNGKPIRGISGTSIQLVRTCLLLN 840
            IIYELADGINLVKLFPQDLLQERDNLELRV NYILYGNGKPIRGISGTSIQLVRTCLLLN
Sbjct: 785  IIYELADGINLVKLFPQDLLQERDNLELRVANYILYGNGKPIRGISGTSIQLVRTCLLLN 844

Query: 841  WDRDKKSSSIEDARASFVEVSTNGLVRNFLRIDLVKSDTAYIRKRKDPSGSGLIFNNESD 900
            WDRDKKSSSIEDARASFVEVSTNGLVRNFLRIDL KSDTAYIRKRKDPSGSGLIFNNESD
Sbjct: 845  WDRDKKSSSIEDARASFVEVSTNGLVRNFLRIDLGKSDTAYIRKRKDPSGSGLIFNNESD 904

Query: 901  RTNINPFFSISSKTRVPQSPSQNQGTIRTLLNRNKERQSLIILSASNCLQMDLFNDVKDY 960
            RTNINPFFSI SKTRVPQSPSQNQGTIRTLLNRNKERQSLIILSASNCLQ+DLFNDVKDY
Sbjct: 905  RTNINPFFSIYSKTRVPQSPSQNQGTIRTLLNRNKERQSLIILSASNCLQIDLFNDVKDY 964

Query: 961  NVIKESSKKDPLISIRNSLGPLGAAPQIVNFYSFYDLITHNPISLTKYLQLANLKQTFQV 1020
            NVIKESSKKDPLISIRNSLGPLGAAPQIVNFYSFY LITHNPISLTKYLQL NLKQ FQV
Sbjct: 965  NVIKESSKKDPLISIRNSLGPLGAAPQIVNFYSFYYLITHNPISLTKYLQLDNLKQIFQV 1024

Query: 1021 LKYYLMDENGGIFNSDPCSNIVFNTFNLNWHFLHHNYHNNYCEERTTRISLGQFFFENVC 1080
            LKYYLMDENGGI NSDPC NIVFNTFNLNWHFLH NYHNNYCEE  TRISLGQFFFENVC
Sbjct: 1025 LKYYLMDENGGILNSDPCINIVFNTFNLNWHFLHDNYHNNYCEETPTRISLGQFFFENVC 1084

Query: 1081 IAKNRPHLKSGQIIIVQVDSVVIRSAKPYLATSGATVHRHYGEILYEGDTLVTFIYEKSR 1140
            IAKNRPHLKSGQIIIVQVDS+VIRSAKPYLATSGATVHRHYGEILYEGDTLVTFIYEKSR
Sbjct: 1085 IAKNRPHLKSGQIIIVQVDSLVIRSAKPYLATSGATVHRHYGEILYEGDTLVTFIYEKSR 1144

Query: 1141 SGDITQGLPKVEQVLEVRSIDSISMSLEKRIEGWNERITRILGIPWGFLIGAELTIVQSR 1200
            SGDITQGLPKVEQVLEVRSIDSISMSLEKRIEGWNERITRILGIPWGFLIGAELTIVQSR
Sbjct: 1145 SGDITQGLPKVEQVLEVRSIDSISMSLEKRIEGWNERITRILGIPWGFLIGAELTIVQSR 1204

Query: 1201 ISLVNKIQKVYRSQGVEIHNRHIEIIVRQITSKVLVSEDGMSNVFSPGELIGLLRAERTG 1260
            ISLVNKIQKVYRSQGVEIHNRHIEIIVRQITSKVLVSEDGMSNVFSPGELIGLLRAERTG
Sbjct: 1205 ISLVNKIQKVYRSQGVEIHNRHIEIIVRQITSKVLVSEDGMSNVFSPGELIGLLRAERTG 1264

Query: 1261 RALEEAICYRAVLLGITKASLNTQSFISEASFQETARVLAKAALRGRIDWLRGLKENVVL 1320
            RALEEAICYRAVLLGITKASLNTQSFISEASFQETARVLAKAALRGRIDWLRGLKENVVL
Sbjct: 1265 RALEEAICYRAVLLGITKASLNTQSFISEASFQETARVLAKAALRGRIDWLRGLKENVVL 1324

Query: 1321 GGMIPVGTGFRELAHRSRQYNNIPLETPQKKFSRGK 1357
            GGMIPVGTGFRELAHRSRQ+NNIPLETP KK   G+
Sbjct: 1325 GGMIPVGTGFRELAHRSRQHNNIPLETPPKKIFEGE 1360

[Close]

BLAST of PI0016027 vs. NCBI nr
Match: QHB75953.1 (RNA polymerase beta II subunit [Cucumis melo subsp. melo])

HSP 1 Score: 2666.0 bits (6909), Expect = 0.0e+00
Identity = 1336/1356 (98.53%), Postives = 1339/1356 (98.75%), Query Frame = 0


Query: 1    MAERADLVFHNKVIDGTAIKRLISRLIDHFGMAYTSHILDQLKTLGFQQATATSISLGID 60
            MAERADLVFHNKVIDGTAIKRLISRLIDHFGMAYTSHILDQLKTLGFQQATATSISLGID
Sbjct: 1    MAERADLVFHNKVIDGTAIKRLISRLIDHFGMAYTSHILDQLKTLGFQQATATSISLGID 60

Query: 61   DLLTIPSKGWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFR 120
            DLLTIPSKGWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFR
Sbjct: 61   DLLTIPSKGWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFR 120

Query: 121  MTDPFNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYII 180
            MTDPFNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYII
Sbjct: 121  MTDPFNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYII 180

Query: 181  SCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIRGILVSPGNRMIPERIF 240
            SCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIRGILVSPGNRMIPERIF
Sbjct: 181  SCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIRGILVSPGNRMIPERIF 240

Query: 241  IQTLIGRVLADDIYMGPRCIGVRNQDIGIGLINRFITFQTQPISIRTPFTCRSTSWICRL 300
            IQTLIGRVLADDIYMGPRCIGVRNQDIGIGLINRFITFQTQPISIRTPFTCRSTSWICRL
Sbjct: 241  IQTLIGRVLADDIYMGPRCIGVRNQDIGIGLINRFITFQTQPISIRTPFTCRSTSWICRL 300

Query: 301  CYGRSPTHGDLVELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHIRAPSNGKI 360
            CYGRSPTHGDLVELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHIRAPSNGKI
Sbjct: 301  CYGRSPTHGDLVELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHIRAPSNGKI 360

Query: 361  KFNEDLVHPTRTRHGHPAFLCYIDLYVTIESEDIIHNVTIPPKSLLLVQNDQYVESEQVI 420
            KFNEDLVHPTRTRHGHPAFLCYIDLYVTIESEDIIHNVTIPPKSLLLVQNDQYVESEQVI
Sbjct: 361  KFNEDLVHPTRTRHGHPAFLCYIDLYVTIESEDIIHNVTIPPKSLLLVQNDQYVESEQVI 420

Query: 421  AEIRAGTYTLNLKERVRKHIYSDSEGEMHWSTDVYHAPEFTYSNVHLLPKTSHLWILSGG 480
            AEIRAGTYTLNLKERVRKHIYSDSEGEMHWSTDVYHAPEFTYSNVHLLPKTSHLWILSGG
Sbjct: 421  AEIRAGTYTLNLKERVRKHIYSDSEGEMHWSTDVYHAPEFTYSNVHLLPKTSHLWILSGG 480

Query: 481  SCGCSVVPFSLYKDQDQINVHSLCVERRYISSLSVNNDKVGQKFYGPHLSGKNESGIPDY 540
            SCGCSVVPFSLYKDQDQINVHSLCVERRYISSLSVNNDKVGQKFYGPHLSGK+ESGIPDY
Sbjct: 481  SCGCSVVPFSLYKDQDQINVHSLCVERRYISSLSVNNDKVGQKFYGPHLSGKHESGIPDY 540

Query: 541  SELNPILCTGQSNLTYPAIFHGNSDLLAKRRRNGFIIQFESLQEREKEQRPPSGISIEIP 600
            SELNPI CTGQSNLTYPAIFHGNSDLLAKRRRNGFIIQFESLQER    RPPSGISIEIP
Sbjct: 541  SELNPIPCTGQSNLTYPAIFHGNSDLLAKRRRNGFIIQFESLQER---VRPPSGISIEIP 600

Query: 601  INGIFRRNSILAYFDDPQYRRNSSGITKYGTIGVHSILKKEDLIEYRGVKDFKPKYQMQM 660
            INGIFRRNSILAYFDDPQYRRNSSGITKYGTIGVHSILKKEDLIEYRGVKD KPKYQMQM
Sbjct: 601  INGIFRRNSILAYFDDPQYRRNSSGITKYGTIGVHSILKKEDLIEYRGVKDLKPKYQMQM 660

Query: 661  KVDRFFFIPEEVHILPESSSIMVRNNSIIGVATRLTLSIRSRVGGLVRVEKKKKRIELKI 720
            KVDRFFFIPEEVHILPESSSIMVRNNSIIGVATRLTLSIRSRVGGLVRVEKKKKRIELKI
Sbjct: 661  KVDRFFFIPEEVHILPESSSIMVRNNSIIGVATRLTLSIRSRVGGLVRVEKKKKRIELKI 720

Query: 721  FSGDIHFPGEMDKISRHNGILIPPERVKKNSKKSKKSKNWIYVQWITPTKKKYFVFVRPV 780
            FSGDIHFPGEMDKISRHNGILIPPERVKKNSKKSKKSKNWIYVQWITPTKKKYFVFVRPV
Sbjct: 721  FSGDIHFPGEMDKISRHNGILIPPERVKKNSKKSKKSKNWIYVQWITPTKKKYFVFVRPV 780

Query: 781  IIYELADGINLVKLFPQDLLQERDNLELRVVNYILYGNGKPIRGISGTSIQLVRTCLLLN 840
            IIYELADGINLVKLFPQDLLQERDNLELRVVNYILYGNGKPIRGISGTSIQLVRTCLLLN
Sbjct: 781  IIYELADGINLVKLFPQDLLQERDNLELRVVNYILYGNGKPIRGISGTSIQLVRTCLLLN 840

Query: 841  WDRDKKSSSIEDARASFVEVSTNGLVRNFLRIDLVKSDTAYIRKRKDPSGSGLIFNNESD 900
            WDRDKK SSIEDARASFVEVSTNGLVRNFLRIDLVKSDTAYIRKRKDPSGSGLIFNNESD
Sbjct: 841  WDRDKKRSSIEDARASFVEVSTNGLVRNFLRIDLVKSDTAYIRKRKDPSGSGLIFNNESD 900

Query: 901  RTNINPFFSISSKTRVPQSPSQNQGTIRTLLNRNKERQSLIILSASNCLQMDLFNDVKDY 960
            RTNINPFFSI SKTRVPQSPSQNQGTIRTLLNRNKERQSLIILSASNCLQMDLFNDVKDY
Sbjct: 901  RTNINPFFSIYSKTRVPQSPSQNQGTIRTLLNRNKERQSLIILSASNCLQMDLFNDVKDY 960

Query: 961  NVIKESSKKDPLISIRNSLGPLGAAPQIVNFYSFYDLITHNPISLTKYLQLANLKQTFQV 1020
            NVIKESSKKDPLISIRNSLGPLGAAPQIVNFYSFYDLITHNPISLTKYLQL NLKQTFQV
Sbjct: 961  NVIKESSKKDPLISIRNSLGPLGAAPQIVNFYSFYDLITHNPISLTKYLQLDNLKQTFQV 1020

Query: 1021 LKYYLMDENGGIFNSDPCSNIVFNTFNLNWHFLHHNYHNNYCEERTTRISLGQFFFENVC 1080
            LKYYLMDENGGIFNSDPCSNIVFNTFNLNWHFLHHNYHNNYCEER TRISLGQFFFENVC
Sbjct: 1021 LKYYLMDENGGIFNSDPCSNIVFNTFNLNWHFLHHNYHNNYCEERPTRISLGQFFFENVC 1080

Query: 1081 IAKNRPHLKSGQIIIVQVDSVVIRSAKPYLATSGATVHRHYGEILYEGDTLVTFIYEKSR 1140
            IAKNRPHLKSGQIIIVQVDSVVIRSAKPYLATSGATVHRHYGEILYEGDTLVTFIYEKSR
Sbjct: 1081 IAKNRPHLKSGQIIIVQVDSVVIRSAKPYLATSGATVHRHYGEILYEGDTLVTFIYEKSR 1140

Query: 1141 SGDITQGLPKVEQVLEVRSIDSISMSLEKRIEGWNERITRILGIPWGFLIGAELTIVQSR 1200
            SGDITQGLPKVEQVLEVRSIDSISMSLEKRIEGWNE ITRILGIPWGFLIGAEL IVQSR
Sbjct: 1141 SGDITQGLPKVEQVLEVRSIDSISMSLEKRIEGWNEHITRILGIPWGFLIGAELMIVQSR 1200

Query: 1201 ISLVNKIQKVYRSQGVEIHNRHIEIIVRQITSKVLVSEDGMSNVFSPGELIGLLRAERTG 1260
            ISLVNKIQKVYRSQGVEIHNRHIEIIVRQITSKVLVSEDGMSNVFSPGELIGLLRAERTG
Sbjct: 1201 ISLVNKIQKVYRSQGVEIHNRHIEIIVRQITSKVLVSEDGMSNVFSPGELIGLLRAERTG 1260

Query: 1261 RALEEAICYRAVLLGITKASLNTQSFISEASFQETARVLAKAALRGRIDWLRGLKENVVL 1320
            RALEEAICYRAVLLGITKASLNTQSFISEASFQETARVLAKAALRGRIDWLRGLKENVVL
Sbjct: 1261 RALEEAICYRAVLLGITKASLNTQSFISEASFQETARVLAKAALRGRIDWLRGLKENVVL 1320

Query: 1321 GGMIPVGTGFRELAHRSRQYNNIPLETPQKKFSRGK 1357
            GGMIPVGTGFRELAHRSRQ+NNIPLE P KK   G+
Sbjct: 1321 GGMIPVGTGFRELAHRSRQHNNIPLEPPPKKIFEGE 1353

[Close]

BLAST of PI0016027 vs. NCBI nr
Match: YP_009346475.1 (RNA polymerase beta' subunit [Cucumis x hytivus] >AOW71085.1 RNA polymerase beta' subunit [Cucumis x hytivus] >QCY72832.1 RpoC2 [Cucumis hystrix])

HSP 1 Score: 2665.2 bits (6907), Expect = 0.0e+00
Identity = 1333/1356 (98.30%), Postives = 1341/1356 (98.89%), Query Frame = 0


Query: 1    MAERADLVFHNKVIDGTAIKRLISRLIDHFGMAYTSHILDQLKTLGFQQATATSISLGID 60
            MAERADLVFHNKVIDGTAIKRLISRLIDHFGMAYTSHILDQLKTLGFQQATATSISLGID
Sbjct: 1    MAERADLVFHNKVIDGTAIKRLISRLIDHFGMAYTSHILDQLKTLGFQQATATSISLGID 60

Query: 61   DLLTIPSKGWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFR 120
            DLLTIPSKGWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFR
Sbjct: 61   DLLTIPSKGWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFR 120

Query: 121  MTDPFNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYII 180
            MTDPFNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYII
Sbjct: 121  MTDPFNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYII 180

Query: 181  SCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIRGILVSPGNRMIPERIF 240
            SCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIRGILVSPGNRMIPERIF
Sbjct: 181  SCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIRGILVSPGNRMIPERIF 240

Query: 241  IQTLIGRVLADDIYMGPRCIGVRNQDIGIGLINRFITFQTQPISIRTPFTCRSTSWICRL 300
            IQTLIGRVLADDIYMGPRCIGVRNQDIGIGLINRFITFQTQPISIRTPFTCRSTSWICRL
Sbjct: 241  IQTLIGRVLADDIYMGPRCIGVRNQDIGIGLINRFITFQTQPISIRTPFTCRSTSWICRL 300

Query: 301  CYGRSPTHGDLVELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHIRAPSNGKI 360
            CYGRSPTHGDLVELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHIRAPSNGKI
Sbjct: 301  CYGRSPTHGDLVELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHIRAPSNGKI 360

Query: 361  KFNEDLVHPTRTRHGHPAFLCYIDLYVTIESEDIIHNVTIPPKSLLLVQNDQYVESEQVI 420
            KFNEDLVHPTRTRHGHPAFLCYIDLYVTIESEDIIHNVTIPPKSLLLVQNDQYVESEQVI
Sbjct: 361  KFNEDLVHPTRTRHGHPAFLCYIDLYVTIESEDIIHNVTIPPKSLLLVQNDQYVESEQVI 420

Query: 421  AEIRAGTYTLNLKERVRKHIYSDSEGEMHWSTDVYHAPEFTYSNVHLLPKTSHLWILSGG 480
            AEIRAGTYTLNLKERVRKHIYSDSEGEMHWSTDVYHAPEFTYSNVHLLPKTSHLWILSGG
Sbjct: 421  AEIRAGTYTLNLKERVRKHIYSDSEGEMHWSTDVYHAPEFTYSNVHLLPKTSHLWILSGG 480

Query: 481  SCGCSVVPFSLYKDQDQINVHSLCVERRYISSLSVNNDKVGQKFYGPHLSGKNESGIPDY 540
            SCGCSVVPFSLYKDQDQINVHSLCVERRYISSLSVNNDKVGQKFYGP LSGKN+SGIPDY
Sbjct: 481  SCGCSVVPFSLYKDQDQINVHSLCVERRYISSLSVNNDKVGQKFYGPDLSGKNKSGIPDY 540

Query: 541  SELNPILCTGQSNLTYPAIFHGNSDLLAKRRRNGFIIQFESLQEREKEQRPPSGISIEIP 600
            SELNPILCTGQSNLTYPAIFHGNSDLLAKRRRNGFIIQFESLQEREKE RPPSGISIEIP
Sbjct: 541  SELNPILCTGQSNLTYPAIFHGNSDLLAKRRRNGFIIQFESLQEREKELRPPSGISIEIP 600

Query: 601  INGIFRRNSILAYFDDPQYRRNSSGITKYGTIGVHSILKKEDLIEYRGVKDFKPKYQMQM 660
            INGIFRRNSILA+FDDPQYRRNSSGITKYGTIGVHSILKKEDLIEYRGVKDFKPKYQMQM
Sbjct: 601  INGIFRRNSILAFFDDPQYRRNSSGITKYGTIGVHSILKKEDLIEYRGVKDFKPKYQMQM 660

Query: 661  KVDRFFFIPEEVHILPESSSIMVRNNSIIGVATRLTLSIRSRVGGLVRVEKKKKRIELKI 720
            KVDRFFFIPEEVHILPESSSIMVRNNSIIGVATRLTLSIRSRVGGLVRVEKKKKRIELKI
Sbjct: 661  KVDRFFFIPEEVHILPESSSIMVRNNSIIGVATRLTLSIRSRVGGLVRVEKKKKRIELKI 720

Query: 721  FSGDIHFPGEMDKISRHNGILIPPERVKKNSKKSKKSKNWIYVQWITPTKKKYFVFVRPV 780
            FSGDIHFPG+MDKISRHNGILIPPERVKKNSKKSKKSKNWIYVQWITPTKKKYFVFVRPV
Sbjct: 721  FSGDIHFPGDMDKISRHNGILIPPERVKKNSKKSKKSKNWIYVQWITPTKKKYFVFVRPV 780

Query: 781  IIYELADGINLVKLFPQDLLQERDNLELRVVNYILYGNGKPIRGISGTSIQLVRTCLLLN 840
            IIYELADGINLVKLFPQDLLQERDNLELRV NYILYGNGKPIRGISGTSIQLVRTCLLLN
Sbjct: 781  IIYELADGINLVKLFPQDLLQERDNLELRVANYILYGNGKPIRGISGTSIQLVRTCLLLN 840

Query: 841  WDRDKKSSSIEDARASFVEVSTNGLVRNFLRIDLVKSDTAYIRKRKDPSGSGLIFNNESD 900
            WDRDKKSSSIEDARASFVEVSTNGLVRNFLRIDL KSDTAYIRKRKDPSGSGLIFNNESD
Sbjct: 841  WDRDKKSSSIEDARASFVEVSTNGLVRNFLRIDLGKSDTAYIRKRKDPSGSGLIFNNESD 900

Query: 901  RTNINPFFSISSKTRVPQSPSQNQGTIRTLLNRNKERQSLIILSASNCLQMDLFNDVKDY 960
            RTNINPFFSI SKT+VPQSPSQNQGTIRTLLNRNKERQSLIILSASNCLQ+DLFNDVKDY
Sbjct: 901  RTNINPFFSIYSKTKVPQSPSQNQGTIRTLLNRNKERQSLIILSASNCLQIDLFNDVKDY 960

Query: 961  NVIKESSKKDPLISIRNSLGPLGAAPQIVNFYSFYDLITHNPISLTKYLQLANLKQTFQV 1020
            NVIKESSKKDPLISIRNSLGPLGAAPQIVNFYSFY LITHNPISLTKYLQL NLKQ FQV
Sbjct: 961  NVIKESSKKDPLISIRNSLGPLGAAPQIVNFYSFYYLITHNPISLTKYLQLDNLKQIFQV 1020

Query: 1021 LKYYLMDENGGIFNSDPCSNIVFNTFNLNWHFLHHNYHNNYCEERTTRISLGQFFFENVC 1080
            LKYYLMDENGGIFNSDPC NIVFNTFNLNWHFLH NYHNNYCEER TRISLGQF FENVC
Sbjct: 1021 LKYYLMDENGGIFNSDPCINIVFNTFNLNWHFLHDNYHNNYCEERPTRISLGQFLFENVC 1080

Query: 1081 IAKNRPHLKSGQIIIVQVDSVVIRSAKPYLATSGATVHRHYGEILYEGDTLVTFIYEKSR 1140
            IAKNRPHLKSGQIIIVQVDS+VIRSAKPYLATSGATVHRHYGEILYEGDTLVTFIYEKSR
Sbjct: 1081 IAKNRPHLKSGQIIIVQVDSLVIRSAKPYLATSGATVHRHYGEILYEGDTLVTFIYEKSR 1140

Query: 1141 SGDITQGLPKVEQVLEVRSIDSISMSLEKRIEGWNERITRILGIPWGFLIGAELTIVQSR 1200
            SGDITQGLPKVEQVLEVRSIDSISMSLEKRIEGWNERITRILGIPWGFLIGAELTIVQSR
Sbjct: 1141 SGDITQGLPKVEQVLEVRSIDSISMSLEKRIEGWNERITRILGIPWGFLIGAELTIVQSR 1200

Query: 1201 ISLVNKIQKVYRSQGVEIHNRHIEIIVRQITSKVLVSEDGMSNVFSPGELIGLLRAERTG 1260
            ISLVNKIQKVYRSQGVEIHNRHIEIIVRQITSKVLVSEDGMSNVFSPGELIGLLRAERTG
Sbjct: 1201 ISLVNKIQKVYRSQGVEIHNRHIEIIVRQITSKVLVSEDGMSNVFSPGELIGLLRAERTG 1260

Query: 1261 RALEEAICYRAVLLGITKASLNTQSFISEASFQETARVLAKAALRGRIDWLRGLKENVVL 1320
            RALEEAICYRAVLLGITKASLNTQSFISEASFQETARVLAKAALRGRIDWLRGLKENVVL
Sbjct: 1261 RALEEAICYRAVLLGITKASLNTQSFISEASFQETARVLAKAALRGRIDWLRGLKENVVL 1320

Query: 1321 GGMIPVGTGFRELAHRSRQYNNIPLETPQKKFSRGK 1357
            GGMIPVGTGFRELAHRSRQ+NNIPLETPQKK   G+
Sbjct: 1321 GGMIPVGTGFRELAHRSRQHNNIPLETPQKKIFEGE 1356

[Close]

BLAST of PI0016027 vs. NCBI nr
Match: Q4VZP3.1 (RecName: Full=DNA-directed RNA polymerase subunit beta''; AltName: Full=PEP; AltName: Full=Plastid-encoded RNA polymerase subunit beta''; Short=RNA polymerase subunit beta'' [Cucumis sativus] >AVE15321.1 RpoC2 [Cucumis sativus var. sativus] >AAZ94641.1 RNA polymerase beta II subunit [Cucumis sativus] >ABI97407.1 RNA polymerase beta' subunit [Cucumis sativus] >ABI98735.1 RNA polymerase beta' subunit [Cucumis sativus] >ARQ16068.1 RNA polymerase beta' subunit [Cucumis sativus])

HSP 1 Score: 2662.1 bits (6899), Expect = 0.0e+00
Identity = 1332/1356 (98.23%), Postives = 1339/1356 (98.75%), Query Frame = 0


Query: 1    MAERADLVFHNKVIDGTAIKRLISRLIDHFGMAYTSHILDQLKTLGFQQATATSISLGID 60
            MAERADLVFHNKVIDGTAIKRLISRLIDHFGMAYTSHILDQLKTLGFQQATATSISLGID
Sbjct: 5    MAERADLVFHNKVIDGTAIKRLISRLIDHFGMAYTSHILDQLKTLGFQQATATSISLGID 64

Query: 61   DLLTIPSKGWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFR 120
            DLLTIPSKGWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFR
Sbjct: 65   DLLTIPSKGWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFR 124

Query: 121  MTDPFNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYII 180
            MTDPFNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYII
Sbjct: 125  MTDPFNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYII 184

Query: 181  SCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIRGILVSPGNRMIPERIF 240
            SCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIRGILVSPGNRMIPERIF
Sbjct: 185  SCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIRGILVSPGNRMIPERIF 244

Query: 241  IQTLIGRVLADDIYMGPRCIGVRNQDIGIGLINRFITFQTQPISIRTPFTCRSTSWICRL 300
            IQTLIGRVLADDIYMGPRCIGVRNQDIGIGLINRFITFQTQPISIRTPFTCRSTSWICRL
Sbjct: 245  IQTLIGRVLADDIYMGPRCIGVRNQDIGIGLINRFITFQTQPISIRTPFTCRSTSWICRL 304

Query: 301  CYGRSPTHGDLVELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHIRAPSNGKI 360
            CYGRSPTHGDLVELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHIRAPSNGKI
Sbjct: 305  CYGRSPTHGDLVELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHIRAPSNGKI 364

Query: 361  KFNEDLVHPTRTRHGHPAFLCYIDLYVTIESEDIIHNVTIPPKSLLLVQNDQYVESEQVI 420
            KFNEDLVHPTRTRHGHPAFLCYIDLYVTIESEDIIHNVTIPPKSLLLVQNDQYVESEQVI
Sbjct: 365  KFNEDLVHPTRTRHGHPAFLCYIDLYVTIESEDIIHNVTIPPKSLLLVQNDQYVESEQVI 424

Query: 421  AEIRAGTYTLNLKERVRKHIYSDSEGEMHWSTDVYHAPEFTYSNVHLLPKTSHLWILSGG 480
            AEIRAGTYTLNLKERVRKHIYSDSEGEMHWSTDVYHAPEFTYSNVHLLPKTSHLWILSGG
Sbjct: 425  AEIRAGTYTLNLKERVRKHIYSDSEGEMHWSTDVYHAPEFTYSNVHLLPKTSHLWILSGG 484

Query: 481  SCGCSVVPFSLYKDQDQINVHSLCVERRYISSLSVNNDKVGQKFYGPHLSGKNESGIPDY 540
            SCGCS+VPFSLYKDQDQINVHSLCVERRYISSLSVNNDKVGQKFYGP LSGKNE+GIPDY
Sbjct: 485  SCGCSLVPFSLYKDQDQINVHSLCVERRYISSLSVNNDKVGQKFYGPDLSGKNENGIPDY 544

Query: 541  SELNPILCTGQSNLTYPAIFHGNSDLLAKRRRNGFIIQFESLQEREKEQRPPSGISIEIP 600
            SELNPILCTGQSNLTYPAIFHGNSDLLAKRRRNGFIIQFESLQEREKE RPPSGISIEIP
Sbjct: 545  SELNPILCTGQSNLTYPAIFHGNSDLLAKRRRNGFIIQFESLQEREKELRPPSGISIEIP 604

Query: 601  INGIFRRNSILAYFDDPQYRRNSSGITKYGTIGVHSILKKEDLIEYRGVKDFKPKYQMQM 660
            INGIFRRNSILA+FDDPQYRRNSSGITKYGTIGVHSILKKEDLIEYRGVKDFKPKYQMQM
Sbjct: 605  INGIFRRNSILAFFDDPQYRRNSSGITKYGTIGVHSILKKEDLIEYRGVKDFKPKYQMQM 664

Query: 661  KVDRFFFIPEEVHILPESSSIMVRNNSIIGVATRLTLSIRSRVGGLVRVEKKKKRIELKI 720
            KVDRFFFIPEEVHILPESSSIMVRNNSIIGVATRLTLSIRSRVGGLVRVEKKKKRIELKI
Sbjct: 665  KVDRFFFIPEEVHILPESSSIMVRNNSIIGVATRLTLSIRSRVGGLVRVEKKKKRIELKI 724

Query: 721  FSGDIHFPGEMDKISRHNGILIPPERVKKNSKKSKKSKNWIYVQWITPTKKKYFVFVRPV 780
            FSGDIHFPGEMDKISRHNGILIPPERVKKNSKKSKKSKNWIYVQWITPTKKKYFVFVRPV
Sbjct: 725  FSGDIHFPGEMDKISRHNGILIPPERVKKNSKKSKKSKNWIYVQWITPTKKKYFVFVRPV 784

Query: 781  IIYELADGINLVKLFPQDLLQERDNLELRVVNYILYGNGKPIRGISGTSIQLVRTCLLLN 840
            IIYELADGINLVKLFPQDLLQERDNLELRV NYILYGNGKPIRGISGTSIQLVRTCLLLN
Sbjct: 785  IIYELADGINLVKLFPQDLLQERDNLELRVANYILYGNGKPIRGISGTSIQLVRTCLLLN 844

Query: 841  WDRDKKSSSIEDARASFVEVSTNGLVRNFLRIDLVKSDTAYIRKRKDPSGSGLIFNNESD 900
            WDRDKKSSSIEDARASFVEVSTNGLVRNFLRIDL KSDTAYIRKRKDPSGSGLIFNNESD
Sbjct: 845  WDRDKKSSSIEDARASFVEVSTNGLVRNFLRIDLGKSDTAYIRKRKDPSGSGLIFNNESD 904

Query: 901  RTNINPFFSISSKTRVPQSPSQNQGTIRTLLNRNKERQSLIILSASNCLQMDLFNDVKDY 960
            RTNINPFFSI SKTRVPQSPSQNQGTIRTLLNRNKERQSLIILSASNCLQ+DLFNDVKDY
Sbjct: 905  RTNINPFFSIYSKTRVPQSPSQNQGTIRTLLNRNKERQSLIILSASNCLQIDLFNDVKDY 964

Query: 961  NVIKESSKKDPLISIRNSLGPLGAAPQIVNFYSFYDLITHNPISLTKYLQLANLKQTFQV 1020
            NVIKESSKKDPLISIRNSLGPLGAAPQIVNFYSFY LITHNPISLTKYLQL NLKQ FQV
Sbjct: 965  NVIKESSKKDPLISIRNSLGPLGAAPQIVNFYSFYYLITHNPISLTKYLQLDNLKQIFQV 1024

Query: 1021 LKYYLMDENGGIFNSDPCSNIVFNTFNLNWHFLHHNYHNNYCEERTTRISLGQFFFENVC 1080
            LKYYLMDENGGI NSDPC NIVFNTFNLNWHFLH NYHNNYCEE  TRISLGQFFFENVC
Sbjct: 1025 LKYYLMDENGGILNSDPCINIVFNTFNLNWHFLHDNYHNNYCEETPTRISLGQFFFENVC 1084

Query: 1081 IAKNRPHLKSGQIIIVQVDSVVIRSAKPYLATSGATVHRHYGEILYEGDTLVTFIYEKSR 1140
            IAKNRPHLKSGQIIIVQVDS+VIRSAKPYLATSGATVHRHYGEILYEGDTLVTFIYEKSR
Sbjct: 1085 IAKNRPHLKSGQIIIVQVDSLVIRSAKPYLATSGATVHRHYGEILYEGDTLVTFIYEKSR 1144

Query: 1141 SGDITQGLPKVEQVLEVRSIDSISMSLEKRIEGWNERITRILGIPWGFLIGAELTIVQSR 1200
            SGDITQGLPKVEQVLEVRSIDSISMSLEKRIEGWNERITRILGIPWGFLIGAELTIVQSR
Sbjct: 1145 SGDITQGLPKVEQVLEVRSIDSISMSLEKRIEGWNERITRILGIPWGFLIGAELTIVQSR 1204

Query: 1201 ISLVNKIQKVYRSQGVEIHNRHIEIIVRQITSKVLVSEDGMSNVFSPGELIGLLRAERTG 1260
            ISLVNKIQKVYRSQGVEIHNRHIEIIVRQITSKVLVSEDGMSNVFSPGELIGLLRAERTG
Sbjct: 1205 ISLVNKIQKVYRSQGVEIHNRHIEIIVRQITSKVLVSEDGMSNVFSPGELIGLLRAERTG 1264

Query: 1261 RALEEAICYRAVLLGITKASLNTQSFISEASFQETARVLAKAALRGRIDWLRGLKENVVL 1320
            RALEEAICYRAVLLGITKASLNTQSFISEASFQETARVLAKAALRGRIDWLRGLKENVVL
Sbjct: 1265 RALEEAICYRAVLLGITKASLNTQSFISEASFQETARVLAKAALRGRIDWLRGLKENVVL 1324

Query: 1321 GGMIPVGTGFRELAHRSRQYNNIPLETPQKKFSRGK 1357
            GGMIPVGTGFRELAHRSRQ+NNIPLETP KK   G+
Sbjct: 1325 GGMIPVGTGFRELAHRSRQHNNIPLETPPKKIFEGE 1360

[Close]

BLAST of PI0016027 vs. NCBI nr
Match: YP_009004034.1 (RNA polymerase beta' subunit [Cucumis hystrix] >YP_247589.2 RNA polymerase beta'' subunit [Cucumis sativus] >ALF03291.1 RNA polymerase beta'' subunit [Cucumis sativus var. hardwickii] >AHJ61376.1 RNA polymerase beta' subunit [Cucumis hystrix] >ANF28367.1 RNA polymerase beta'' subunit [Cucumis sativus var. hardwickii] >ASY97448.1 RNA polymerase beta'' subunit [Cucumis sativus var. hardwickii] >QDH07735.1 RpoC2 [Cucumis sativus])

HSP 1 Score: 2662.1 bits (6899), Expect = 0.0e+00
Identity = 1332/1356 (98.23%), Postives = 1339/1356 (98.75%), Query Frame = 0


Query: 1    MAERADLVFHNKVIDGTAIKRLISRLIDHFGMAYTSHILDQLKTLGFQQATATSISLGID 60
            MAERADLVFHNKVIDGTAIKRLISRLIDHFGMAYTSHILDQLKTLGFQQATATSISLGID
Sbjct: 1    MAERADLVFHNKVIDGTAIKRLISRLIDHFGMAYTSHILDQLKTLGFQQATATSISLGID 60

Query: 61   DLLTIPSKGWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFR 120
            DLLTIPSKGWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFR
Sbjct: 61   DLLTIPSKGWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFR 120

Query: 121  MTDPFNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYII 180
            MTDPFNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYII
Sbjct: 121  MTDPFNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYII 180

Query: 181  SCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIRGILVSPGNRMIPERIF 240
            SCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIRGILVSPGNRMIPERIF
Sbjct: 181  SCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIRGILVSPGNRMIPERIF 240

Query: 241  IQTLIGRVLADDIYMGPRCIGVRNQDIGIGLINRFITFQTQPISIRTPFTCRSTSWICRL 300
            IQTLIGRVLADDIYMGPRCIGVRNQDIGIGLINRFITFQTQPISIRTPFTCRSTSWICRL
Sbjct: 241  IQTLIGRVLADDIYMGPRCIGVRNQDIGIGLINRFITFQTQPISIRTPFTCRSTSWICRL 300

Query: 301  CYGRSPTHGDLVELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHIRAPSNGKI 360
            CYGRSPTHGDLVELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHIRAPSNGKI
Sbjct: 301  CYGRSPTHGDLVELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHIRAPSNGKI 360

Query: 361  KFNEDLVHPTRTRHGHPAFLCYIDLYVTIESEDIIHNVTIPPKSLLLVQNDQYVESEQVI 420
            KFNEDLVHPTRTRHGHPAFLCYIDLYVTIESEDIIHNVTIPPKSLLLVQNDQYVESEQVI
Sbjct: 361  KFNEDLVHPTRTRHGHPAFLCYIDLYVTIESEDIIHNVTIPPKSLLLVQNDQYVESEQVI 420

Query: 421  AEIRAGTYTLNLKERVRKHIYSDSEGEMHWSTDVYHAPEFTYSNVHLLPKTSHLWILSGG 480
            AEIRAGTYTLNLKERVRKHIYSDSEGEMHWSTDVYHAPEFTYSNVHLLPKTSHLWILSGG
Sbjct: 421  AEIRAGTYTLNLKERVRKHIYSDSEGEMHWSTDVYHAPEFTYSNVHLLPKTSHLWILSGG 480

Query: 481  SCGCSVVPFSLYKDQDQINVHSLCVERRYISSLSVNNDKVGQKFYGPHLSGKNESGIPDY 540
            SCGCS+VPFSLYKDQDQINVHSLCVERRYISSLSVNNDKVGQKFYGP LSGKNE+GIPDY
Sbjct: 481  SCGCSLVPFSLYKDQDQINVHSLCVERRYISSLSVNNDKVGQKFYGPDLSGKNENGIPDY 540

Query: 541  SELNPILCTGQSNLTYPAIFHGNSDLLAKRRRNGFIIQFESLQEREKEQRPPSGISIEIP 600
            SELNPILCTGQSNLTYPAIFHGNSDLLAKRRRNGFIIQFESLQEREKE RPPSGISIEIP
Sbjct: 541  SELNPILCTGQSNLTYPAIFHGNSDLLAKRRRNGFIIQFESLQEREKELRPPSGISIEIP 600

Query: 601  INGIFRRNSILAYFDDPQYRRNSSGITKYGTIGVHSILKKEDLIEYRGVKDFKPKYQMQM 660
            INGIFRRNSILA+FDDPQYRRNSSGITKYGTIGVHSILKKEDLIEYRGVKDFKPKYQMQM
Sbjct: 601  INGIFRRNSILAFFDDPQYRRNSSGITKYGTIGVHSILKKEDLIEYRGVKDFKPKYQMQM 660

Query: 661  KVDRFFFIPEEVHILPESSSIMVRNNSIIGVATRLTLSIRSRVGGLVRVEKKKKRIELKI 720
            KVDRFFFIPEEVHILPESSSIMVRNNSIIGVATRLTLSIRSRVGGLVRVEKKKKRIELKI
Sbjct: 661  KVDRFFFIPEEVHILPESSSIMVRNNSIIGVATRLTLSIRSRVGGLVRVEKKKKRIELKI 720

Query: 721  FSGDIHFPGEMDKISRHNGILIPPERVKKNSKKSKKSKNWIYVQWITPTKKKYFVFVRPV 780
            FSGDIHFPGEMDKISRHNGILIPPERVKKNSKKSKKSKNWIYVQWITPTKKKYFVFVRPV
Sbjct: 721  FSGDIHFPGEMDKISRHNGILIPPERVKKNSKKSKKSKNWIYVQWITPTKKKYFVFVRPV 780

Query: 781  IIYELADGINLVKLFPQDLLQERDNLELRVVNYILYGNGKPIRGISGTSIQLVRTCLLLN 840
            IIYELADGINLVKLFPQDLLQERDNLELRV NYILYGNGKPIRGISGTSIQLVRTCLLLN
Sbjct: 781  IIYELADGINLVKLFPQDLLQERDNLELRVANYILYGNGKPIRGISGTSIQLVRTCLLLN 840

Query: 841  WDRDKKSSSIEDARASFVEVSTNGLVRNFLRIDLVKSDTAYIRKRKDPSGSGLIFNNESD 900
            WDRDKKSSSIEDARASFVEVSTNGLVRNFLRIDL KSDTAYIRKRKDPSGSGLIFNNESD
Sbjct: 841  WDRDKKSSSIEDARASFVEVSTNGLVRNFLRIDLGKSDTAYIRKRKDPSGSGLIFNNESD 900

Query: 901  RTNINPFFSISSKTRVPQSPSQNQGTIRTLLNRNKERQSLIILSASNCLQMDLFNDVKDY 960
            RTNINPFFSI SKTRVPQSPSQNQGTIRTLLNRNKERQSLIILSASNCLQ+DLFNDVKDY
Sbjct: 901  RTNINPFFSIYSKTRVPQSPSQNQGTIRTLLNRNKERQSLIILSASNCLQIDLFNDVKDY 960

Query: 961  NVIKESSKKDPLISIRNSLGPLGAAPQIVNFYSFYDLITHNPISLTKYLQLANLKQTFQV 1020
            NVIKESSKKDPLISIRNSLGPLGAAPQIVNFYSFY LITHNPISLTKYLQL NLKQ FQV
Sbjct: 961  NVIKESSKKDPLISIRNSLGPLGAAPQIVNFYSFYYLITHNPISLTKYLQLDNLKQIFQV 1020

Query: 1021 LKYYLMDENGGIFNSDPCSNIVFNTFNLNWHFLHHNYHNNYCEERTTRISLGQFFFENVC 1080
            LKYYLMDENGGI NSDPC NIVFNTFNLNWHFLH NYHNNYCEE  TRISLGQFFFENVC
Sbjct: 1021 LKYYLMDENGGILNSDPCINIVFNTFNLNWHFLHDNYHNNYCEETPTRISLGQFFFENVC 1080

Query: 1081 IAKNRPHLKSGQIIIVQVDSVVIRSAKPYLATSGATVHRHYGEILYEGDTLVTFIYEKSR 1140
            IAKNRPHLKSGQIIIVQVDS+VIRSAKPYLATSGATVHRHYGEILYEGDTLVTFIYEKSR
Sbjct: 1081 IAKNRPHLKSGQIIIVQVDSLVIRSAKPYLATSGATVHRHYGEILYEGDTLVTFIYEKSR 1140

Query: 1141 SGDITQGLPKVEQVLEVRSIDSISMSLEKRIEGWNERITRILGIPWGFLIGAELTIVQSR 1200
            SGDITQGLPKVEQVLEVRSIDSISMSLEKRIEGWNERITRILGIPWGFLIGAELTIVQSR
Sbjct: 1141 SGDITQGLPKVEQVLEVRSIDSISMSLEKRIEGWNERITRILGIPWGFLIGAELTIVQSR 1200

Query: 1201 ISLVNKIQKVYRSQGVEIHNRHIEIIVRQITSKVLVSEDGMSNVFSPGELIGLLRAERTG 1260
            ISLVNKIQKVYRSQGVEIHNRHIEIIVRQITSKVLVSEDGMSNVFSPGELIGLLRAERTG
Sbjct: 1201 ISLVNKIQKVYRSQGVEIHNRHIEIIVRQITSKVLVSEDGMSNVFSPGELIGLLRAERTG 1260

Query: 1261 RALEEAICYRAVLLGITKASLNTQSFISEASFQETARVLAKAALRGRIDWLRGLKENVVL 1320
            RALEEAICYRAVLLGITKASLNTQSFISEASFQETARVLAKAALRGRIDWLRGLKENVVL
Sbjct: 1261 RALEEAICYRAVLLGITKASLNTQSFISEASFQETARVLAKAALRGRIDWLRGLKENVVL 1320

Query: 1321 GGMIPVGTGFRELAHRSRQYNNIPLETPQKKFSRGK 1357
            GGMIPVGTGFRELAHRSRQ+NNIPLETP KK   G+
Sbjct: 1321 GGMIPVGTGFRELAHRSRQHNNIPLETPPKKIFEGE 1356

[Close]

BLAST of PI0016027 vs. NCBI nr
Match: YP_004841773.1 (RNA polymerase beta'' subunit [Cucumis melo subsp. melo] >YP_009860063.1 RNA polymerase beta'' subunit [Cucumis melo subsp. agrestis] >ASY96578.1 RNA polymerase beta'' subunit [Cucumis melo var. conomon] >ASY96665.1 RNA polymerase beta'' subunit [Cucumis melo var. makuwa] >ASY96839.1 RNA polymerase beta'' subunit [Cucumis melo var. dudaim] >ASY97100.1 RNA polymerase beta'' subunit [Cucumis melo var. inodorus] >AEM76882.1 RNA polymerase beta'' subunit [Cucumis melo subsp. melo])

HSP 1 Score: 2661.3 bits (6897), Expect = 0.0e+00
Identity = 1332/1358 (98.09%), Postives = 1341/1358 (98.75%), Query Frame = 0


Query: 1    MAERADLVFHNKVIDGTAIKRLISRLIDHFGMAYTSHILDQLKTLGFQQATATSISLGID 60
            MAERADLVFHNKVIDGTAIKRLISRLIDHFGMAYTSHILDQLKTLGFQQATATSISLGID
Sbjct: 5    MAERADLVFHNKVIDGTAIKRLISRLIDHFGMAYTSHILDQLKTLGFQQATATSISLGID 64

Query: 61   DLLTIPSKGWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFR 120
            DLLTIPSKGWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFR
Sbjct: 65   DLLTIPSKGWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFR 124

Query: 121  MTDPFNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYII 180
            MTDPFNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYII
Sbjct: 125  MTDPFNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYII 184

Query: 181  SCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIRGILVSPGNRMIPERIF 240
            SCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIRGILVSPGNRMIPERIF
Sbjct: 185  SCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIRGILVSPGNRMIPERIF 244

Query: 241  IQTLIGRVLADDIYMGPRCIGVRNQDIGIGLINRFITFQTQPISIRTPFTCRSTSWICRL 300
            IQTLIGRVLADDIYMGPRCIGVRNQDIGIGLINRFITFQTQPISIRTPFTCRSTSWICRL
Sbjct: 245  IQTLIGRVLADDIYMGPRCIGVRNQDIGIGLINRFITFQTQPISIRTPFTCRSTSWICRL 304

Query: 301  CYGRSPTHGDLVELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHIRAPSNGKI 360
            CYGRSPTHGDLVELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHIRA SNGKI
Sbjct: 305  CYGRSPTHGDLVELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHIRASSNGKI 364

Query: 361  KFNEDLVHPTRTRHGHPAFLCYIDLYVTIESEDIIHNVTIPPKSLLLVQNDQYVESEQVI 420
            KFNE+LVHPTRTRHGHPAFLCYIDLYVTIESEDIIHNVTIPPKSLLLVQNDQYVESEQVI
Sbjct: 365  KFNENLVHPTRTRHGHPAFLCYIDLYVTIESEDIIHNVTIPPKSLLLVQNDQYVESEQVI 424

Query: 421  AEIRAGTYTLNLKERVRKHIYSDSEGEMHWSTDVYHAPEFTYSNVHLLPKTSHLWILSGG 480
            AEIRAGTYTLNLKERVRKHIYSDSEGEMHWSTDVYHAPEFTYSNVHLLPKTSHLWILSGG
Sbjct: 425  AEIRAGTYTLNLKERVRKHIYSDSEGEMHWSTDVYHAPEFTYSNVHLLPKTSHLWILSGG 484

Query: 481  SCGCSVVPFSLYKDQDQINVHSLCVERRYISSLSVNNDKVGQKFYGPHLSGKNESGIPDY 540
            SCGCSVVPFSLYKDQDQINVHSLCVERRYISSLSVNNDKVGQKFYGP LSGKNESGIPDY
Sbjct: 485  SCGCSVVPFSLYKDQDQINVHSLCVERRYISSLSVNNDKVGQKFYGPDLSGKNESGIPDY 544

Query: 541  SELNPILCTGQSNLTYPAIFHGNSDLLAKRRRNGFIIQFESLQEREKEQRPPSGISIEIP 600
            SELNPILCTGQSNLTYPAIFHGNSDLLAKRRRNGFIIQFESLQEREKE RPPSGISIEIP
Sbjct: 545  SELNPILCTGQSNLTYPAIFHGNSDLLAKRRRNGFIIQFESLQEREKELRPPSGISIEIP 604

Query: 601  INGIFRRNSILAYFDDPQYRRNSSGITKYGTIGVHSILKKEDLIEYRGVKDFKPKYQMQM 660
            ING+FRRNSILA+FDDPQYRRNSSGITKYGTIGVHSILKKEDLIEYRGVKDFKPKYQMQM
Sbjct: 605  INGLFRRNSILAFFDDPQYRRNSSGITKYGTIGVHSILKKEDLIEYRGVKDFKPKYQMQM 664

Query: 661  KVDRFFFIPEEVHILPESSSIMVRNNSIIGVATRLTLSIRSRVGGLVRVEKKKKRIELKI 720
            KVDRFFFIPEEVHILPESSSIMVRNNSIIGVATRLTLSIRSRVGGLVRVEKKKKRIELKI
Sbjct: 665  KVDRFFFIPEEVHILPESSSIMVRNNSIIGVATRLTLSIRSRVGGLVRVEKKKKRIELKI 724

Query: 721  FSGDIHFPGEMDKISRHNGILIPPERVKKNSKKSKKSKNWIYVQWITPTKKKYFVFVRPV 780
            FSGDIHFPGEMDKISRHNGILIPPERVKKNSKKSKKSKNWIYVQWITPTKKKYFVFVRPV
Sbjct: 725  FSGDIHFPGEMDKISRHNGILIPPERVKKNSKKSKKSKNWIYVQWITPTKKKYFVFVRPV 784

Query: 781  IIYELADGINLVKLFPQDLLQERDNLELRVVNYILYGNGKPIRGISGTSIQLVRTCLLLN 840
            IIYELADGINLVKLFPQDLLQERDNLELRVVNYILYGNGKPIRGISGTSIQLVRTCLLLN
Sbjct: 785  IIYELADGINLVKLFPQDLLQERDNLELRVVNYILYGNGKPIRGISGTSIQLVRTCLLLN 844

Query: 841  WDRDKKSSSIEDARASFVEVSTNGLVRNFLRIDLVKSDTAYIRKRKDPSGSGLIFNNESD 900
            WDRDKKSSSIEDARASFVEVSTNGLVRNFLRIDL KSDTAY+RKRKDPSGSGLIFNNESD
Sbjct: 845  WDRDKKSSSIEDARASFVEVSTNGLVRNFLRIDLGKSDTAYMRKRKDPSGSGLIFNNESD 904

Query: 901  RTNINPFFSISSKTRVPQSPSQNQGTIRTLLNRNKERQSLIILSASNCLQMDLFNDVKDY 960
            RTNINPFFSI SKTRVPQSPSQNQGTIRTL NRNKERQSLIILSASNCLQMDLFNDVKDY
Sbjct: 905  RTNINPFFSIYSKTRVPQSPSQNQGTIRTLFNRNKERQSLIILSASNCLQMDLFNDVKDY 964

Query: 961  NVIKESSKKDPLISIRNSLGPLGAAPQIVNFYSFYDLITHNPISLTKYLQLANLKQTFQV 1020
            NVIKESSKKDPLISIRNSLGPLGAAPQIVNFYSFYDLITHNPISLTKYLQL NLKQTFQV
Sbjct: 965  NVIKESSKKDPLISIRNSLGPLGAAPQIVNFYSFYDLITHNPISLTKYLQLDNLKQTFQV 1024

Query: 1021 LKYYLMDENGGIFNSDPCSNIVFNTFNLNWHFLHHNYHNNYCEE--RTTRISLGQFFFEN 1080
            LKYYLMDENGGIFNSDPCSNIVFNTFNLNWHFLHHNYHNNYCEE    TRISLG FFFEN
Sbjct: 1025 LKYYLMDENGGIFNSDPCSNIVFNTFNLNWHFLHHNYHNNYCEETPTRTRISLGHFFFEN 1084

Query: 1081 VCIAKNRPHLKSGQIIIVQVDSVVIRSAKPYLATSGATVHRHYGEILYEGDTLVTFIYEK 1140
            VCIAKNRPHLKSGQIIIV+VDSVVIRSAKPYLATSGATVHRHYGE+LYEGDTLVTFIYEK
Sbjct: 1085 VCIAKNRPHLKSGQIIIVEVDSVVIRSAKPYLATSGATVHRHYGEMLYEGDTLVTFIYEK 1144

Query: 1141 SRSGDITQGLPKVEQVLEVRSIDSISMSLEKRIEGWNERITRILGIPWGFLIGAELTIVQ 1200
            SRSGDITQGLPKVEQVLEVRSIDSISMSLEKRIEGWNERITRILGIPWGFLIG+ELTIVQ
Sbjct: 1145 SRSGDITQGLPKVEQVLEVRSIDSISMSLEKRIEGWNERITRILGIPWGFLIGSELTIVQ 1204

Query: 1201 SRISLVNKIQKVYRSQGVEIHNRHIEIIVRQITSKVLVSEDGMSNVFSPGELIGLLRAER 1260
            SRISLVNKIQKVYRSQGVEIHNRHIEIIVRQITSKVLVSEDGMSNVFSPGELIGLLRAER
Sbjct: 1205 SRISLVNKIQKVYRSQGVEIHNRHIEIIVRQITSKVLVSEDGMSNVFSPGELIGLLRAER 1264

Query: 1261 TGRALEEAICYRAVLLGITKASLNTQSFISEASFQETARVLAKAALRGRIDWLRGLKENV 1320
            TGRALEEAICYRAVLLGITKASLNTQSFISEASFQETARVLAKAALRGRIDWLRGLKENV
Sbjct: 1265 TGRALEEAICYRAVLLGITKASLNTQSFISEASFQETARVLAKAALRGRIDWLRGLKENV 1324

Query: 1321 VLGGMIPVGTGFRELAHRSRQYNNIPLETPQKKFSRGK 1357
            VLGGMIPVGTGFRELAHRSRQ+NNIPLE P KK   G+
Sbjct: 1325 VLGGMIPVGTGFRELAHRSRQHNNIPLEPPPKKIFEGE 1362

[Close]

BLAST of PI0016027 vs. TAIR 10
Match: ATCG00170.1 (DNA-directed RNA polymerase family protein )

HSP 1 Score: 2149.0 bits (5567), Expect = 0.0e+00
Identity = 1094/1357 (80.62%), Postives = 1189/1357 (87.62%), Query Frame = 0


Query: 1    MAERADLVFHNKVIDGTAIKRLISRLIDHFGMAYTSHILDQLKTLGFQQATATSISLGID 60
            MAERA+LVFHNKVIDGTAIKRLISRLIDHFGMAYTSHILDQ+KTLGFQQATATSISLGID
Sbjct: 1    MAERANLVFHNKVIDGTAIKRLISRLIDHFGMAYTSHILDQVKTLGFQQATATSISLGID 60

Query: 61   DLLTIPSKGWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFR 120
            DLLTIPSKGWLVQDAEQQS ILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFR
Sbjct: 61   DLLTIPSKGWLVQDAEQQSWILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFR 120

Query: 121  MTDPFNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYII 180
            MTDPFNPVH+MSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYII
Sbjct: 121  MTDPFNPVHMMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYII 180

Query: 181  SCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIRGILVSP--GNRMIPER 240
            SCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIRGI VSP   NRM+ ER
Sbjct: 181  SCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIRGISVSPRNKNRMMSER 240

Query: 241  IFIQTLIGRVLADDIYMGPRCIGVRNQDIGIGLINRFITFQTQPISIRTPFTCRSTSWIC 300
            IFIQTLIGRVLADDIY+G RC+  RNQD+GIGL+NR ITF TQ ISIRTPFTCRSTSWIC
Sbjct: 241  IFIQTLIGRVLADDIYIGSRCVAFRNQDLGIGLVNRLITFGTQSISIRTPFTCRSTSWIC 300

Query: 301  RLCYGRSPTHGDLVELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHIRAPSNG 360
            RLCYGRSPTHGDLVELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEH+RAP NG
Sbjct: 301  RLCYGRSPTHGDLVELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHVRAPYNG 360

Query: 361  KIKFNEDLVHPTRTRHGHPAFLCYIDLYVTIESEDIIHNVTIPPKSLLLVQNDQYVESEQ 420
            KIKFNEDLVHPTRTRHGHPAFLCYIDL V IESEDIIH+VTIPPKS LLVQNDQYVESEQ
Sbjct: 361  KIKFNEDLVHPTRTRHGHPAFLCYIDLSVIIESEDIIHSVTIPPKSFLLVQNDQYVESEQ 420

Query: 421  VIAEIRAGTYTLNLKERVRKHIYSDSEGEMHWSTDVYHAPEFTYSNVHLLPKTSHLWILS 480
            VIAEIR GTYT + KERVRK+IYSDSEGEMHWSTDV HAPEFTYSNVHLLPKTSHLWILS
Sbjct: 421  VIAEIREGTYTFHFKERVRKYIYSDSEGEMHWSTDVSHAPEFTYSNVHLLPKTSHLWILS 480

Query: 481  GGSCGCSVVPFSLYKDQDQINVHSLCVERRYISSLSVNNDKVGQKFYGPHLSGKNESGIP 540
            GGSCG S++ FS++KDQDQ+N+  L  ER+ ISSLSVNND+V QKF+    +   + GI 
Sbjct: 481  GGSCGSSLIRFSIHKDQDQMNIPFLSAERKSISSLSVNNDQVSQKFFSSDFADPKKLGIY 540

Query: 541  DYSELNPILCTGQSNLTYPAIFHGNSDLLAKRRRNGFIIQFESLQEREKEQRPPSGISIE 600
            DYSELN  L T   NL Y AIFH NSDLLAKRRRN F+I F+S+QE+EKE  P SGIS+E
Sbjct: 541  DYSELNGNLGTSHYNLIYSAIFHENSDLLAKRRRNRFLIPFQSIQEQEKEFIPQSGISVE 600

Query: 601  IPINGIFRRNSILAYFDDPQYRRNSSGITKYGTIGVHSILKKEDLIEYRGVKDFKPKYQM 660
            IPINGIFRRNSI A+FDDP+YRR SSGI KYGT+   SI++KED+IEYRGV+  K KY  
Sbjct: 601  IPINGIFRRNSIFAFFDDPRYRRKSSGILKYGTLKADSIIQKEDMIEYRGVQKIKTKY-- 660

Query: 661  QMKVDRFFFIPEEVHILPESSSIMVRNNSIIGVATRLTLSIRSRVGGLVRVEKKKKRIEL 720
            +MKVDRFFFIPEEVHILPESS+IMV+N SIIGV TRLTL+IRS+VGGL+RVEKKKKRIEL
Sbjct: 661  EMKVDRFFFIPEEVHILPESSAIMVQNYSIIGVDTRLTLNIRSQVGGLIRVEKKKKRIEL 720

Query: 721  KIFSGDIHFPGEMDKISRHNGILIPPERVKKNSKKSKKSKNWIYVQWITPTKKKYFVFVR 780
            KIFSGDIHFP + DKISRH+GILIPP R KKNSK+SKK KNWIYVQ ITPTKKK+FV VR
Sbjct: 721  KIFSGDIHFPDKTDKISRHSGILIPPGRGKKNSKESKKFKNWIYVQRITPTKKKFFVLVR 780

Query: 781  PVIIYELADGINLVKLFPQDLLQERDNLELRVVNYILYGNGKPIRGISGTSIQLVRTCLL 840
            PV  YE+AD INL  LFPQDL +E+DN++LRV NYILYGNGKP RGIS TSIQLVRTCL+
Sbjct: 781  PVATYEIADSINLATLFPQDLFREKDNIQLRVFNYILYGNGKPTRGISDTSIQLVRTCLV 840

Query: 841  LNWDRDKKSSSIEDARASFVEVSTNGLVRNFLRIDLVKSDTAYIRKRKDPSGSGLIFNNE 900
            LNWD   K+SS+E+ RA FVEVST GL+++F+RI LVKS  +YIRKR +   SGLI    
Sbjct: 841  LNWD---KNSSLEEVRAFFVEVSTKGLIQDFIRIGLVKSHISYIRKRNNSPDSGLI---- 900

Query: 901  SDRTNINPFFSISSKTRV-PQSPSQNQGTIRTLLNRNKERQSLIILSASNCLQMDLFNDV 960
                ++NPF+SIS K+ +  QS  QN GTIR  LNRNKE QSL+ILS+SNC +M  FN V
Sbjct: 901  -SADHMNPFYSISPKSGILQQSLRQNHGTIRMFLNRNKESQSLLILSSSNCFRMGPFNHV 960

Query: 961  KDYNVIKESSKKDPLISIRNSLGPLGAAPQIVNFYSFYDLITHNPISLTKYLQLANLKQT 1020
            K +NVI +S KK+ LI+I+NS GPLG A  I NFYSF  L+T+N ISL KY QL NLK  
Sbjct: 961  KHHNVINQSIKKNTLITIKNSSGPLGTATPISNFYSFLPLLTYNQISLIKYFQLDNLKYI 1020

Query: 1021 FQVLKYYLMDENGGIFNSDPCSNIVFNTFNLNWHFLHHNYHNNYCEERTTRISLGQFFFE 1080
            FQ +  YL+DENG I N DP SN+V N F LNW+FLH NYH+NYCEE +T ISLGQFF E
Sbjct: 1021 FQKINSYLIDENGIILNLDPYSNVVLNPFKLNWYFLHQNYHHNYCEETSTIISLGQFFCE 1080

Query: 1081 NVCIAKNRPHLKSGQIIIVQVDSVVIRSAKPYLATSGATVHRHYGEILYEGDTLVTFIYE 1140
            NVCIAK  PHLKSGQ++IVQ DS VIRSAKPYLAT GA VH HY EILYEGDTLVTFIYE
Sbjct: 1081 NVCIAKKEPHLKSGQVLIVQRDSAVIRSAKPYLATPGAKVHGHYSEILYEGDTLVTFIYE 1140

Query: 1141 KSRSGDITQGLPKVEQVLEVRSIDSISMSLEKRIEGWNERITRILGIPWGFLIGAELTIV 1200
            KSRSGDITQGLPKVEQVLEVRSIDSIS++LEKRI+GWN+ ITRILGIPWGFLIGAELTIV
Sbjct: 1141 KSRSGDITQGLPKVEQVLEVRSIDSISLNLEKRIKGWNKCITRILGIPWGFLIGAELTIV 1200

Query: 1201 QSRISLVNKIQKVYRSQGVEIHNRHIEIIVRQITSKVLVSEDGMSNVFSPGELIGLLRAE 1260
            QSRISLVNKIQKVYRSQGV+IHNRHIEIIVRQITSKVLVSE+GMSNVF PGELIGLLRAE
Sbjct: 1201 QSRISLVNKIQKVYRSQGVQIHNRHIEIIVRQITSKVLVSEEGMSNVFLPGELIGLLRAE 1260

Query: 1261 RTGRALEEAICYRAVLLGITKASLNTQSFISEASFQETARVLAKAALRGRIDWLRGLKEN 1320
            RTGRALEEAICYRAVLLGIT+ASLNTQSFISEASFQETARVLAKAALRGRIDWL+GLKEN
Sbjct: 1261 RTGRALEEAICYRAVLLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKEN 1320

Query: 1321 VVLGGMIPVGTGFRE-LAHRSRQYNNIPLETPQKKFS 1354
            VVLGG+IP GTGF + L H SRQ+ NI LE   K  +
Sbjct: 1321 VVLGGVIPAGTGFNKGLVHCSRQHTNIILEKKTKNLA 1347

[Close]

BLAST of PI0016027 vs. TAIR 10
Match: AT3G57660.1 (nuclear RNA polymerase A1 )

HSP 1 Score: 74.7 bits (182), Expect = 6.3e-13
Identity = 70/252 (27.78%), Postives = 109/252 (43.25%), Query Frame = 0


Query: 126  NPVHIMSFSGARG---NASQVHQLVGMRGLMSDPQGQMID---LP--------------I 185
            N + +M+ SGA+G   N  Q+   +G + L      +M+    LP              I
Sbjct: 936  NCISLMTISGAKGSKVNFQQISSHLGQQDLEGKRVPRMVSGKTLPCFHPWDWSPRAGGFI 995

Query: 186  QSNLREGLSLTEYIISCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHI------VVRRTD 245
                  GL   EY   C   R+G+VDTAV+TS +GYL R L++ ++ +       VR  D
Sbjct: 996  SDRFLSGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLMKNLESLKVNYDCTVRDAD 1055

Query: 246  CGTIR------GILVSPGN--RMIPERIFIQTLIGRVLADDIYMGPRCIGVRNQDIGIGL 305
               I+      G+ V   +      E    Q ++ +  ++D+  G         D+ I L
Sbjct: 1056 GSIIQFQYGEDGVDVHRSSFIEKFKELTINQDMVLQKCSEDMLSGASSY---ISDLPISL 1115

Query: 306  INRFITF-QTQPISIRTPFTCRSTSWICRLCYGRSPTHGDLVELGEAVGIIAGQSIGEPG 343
                  F +  P++ R          + +L   +S     L + GE VG++A QS+GEP 
Sbjct: 1116 KKGAEKFVEAMPMNERIASKFVRQEELLKLV--KSKFFASLAQPGEPVGVLAAQSVGEPS 1175

[Close]

BLAST of PI0016027 vs. TAIR 10
Match: AT5G60040.1 (nuclear RNA polymerase C1 )

HSP 1 Score: 65.1 bits (157), Expect = 5.0e-10
Identity = 55/217 (25.35%), Postives = 93/217 (42.86%), Query Frame = 0


Query: 165  IQSNLREGLSLTEYIISCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVR-----RTD 224
            + ++   GL+ TE+     G R+G+VDTAV+T+  GY++RRL++ ++ ++V      R  
Sbjct: 835  VANSFYSGLTATEFFFHTMGGREGLVDTAVKTASTGYMSRRLMKALEDLLVHYDNTVRNA 894

Query: 225  CGTIRGILV------------SPGNRMIPERIFIQT-LIGRVLADDIYMGPRCIG----- 284
             G I                   G  +   R+F++        +   Y+    +      
Sbjct: 895  SGCILQFTYGDDGMDPALMEGKDGAPLNFNRLFLKVQATCPPRSHHTYLSSEELSQKFEE 954

Query: 285  --VRNQ------DIGIGLINRFITF-------QTQPISIRTPFTCRSTSWICRLCYGRSP 344
              VR+       D  +  +  F++          Q +   +  T +      ++C  R  
Sbjct: 955  ELVRHDKSRVCTDAFVKSLREFVSLLGVKSASPPQVLYKASGVTDKQLEVFVKICVFR-- 1014

[Close]

BLAST of PI0016027 vs. TAIR 10
Match: AT5G60040.2 (nuclear RNA polymerase C1 )

HSP 1 Score: 65.1 bits (157), Expect = 5.0e-10
Identity = 55/217 (25.35%), Postives = 93/217 (42.86%), Query Frame = 0


Query: 165  IQSNLREGLSLTEYIISCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVR-----RTD 224
            + ++   GL+ TE+     G R+G+VDTAV+T+  GY++RRL++ ++ ++V      R  
Sbjct: 852  VANSFYSGLTATEFFFHTMGGREGLVDTAVKTASTGYMSRRLMKALEDLLVHYDNTVRNA 911

Query: 225  CGTIRGILV------------SPGNRMIPERIFIQT-LIGRVLADDIYMGPRCIG----- 284
             G I                   G  +   R+F++        +   Y+    +      
Sbjct: 912  SGCILQFTYGDDGMDPALMEGKDGAPLNFNRLFLKVQATCPPRSHHTYLSSEELSQKFEE 971

Query: 285  --VRNQ------DIGIGLINRFITF-------QTQPISIRTPFTCRSTSWICRLCYGRSP 344
              VR+       D  +  +  F++          Q +   +  T +      ++C  R  
Sbjct: 972  ELVRHDKSRVCTDAFVKSLREFVSLLGVKSASPPQVLYKASGVTDKQLEVFVKICVFR-- 1031

[Close]

BLAST of PI0016027 vs. TAIR 10
Match: AT4G35800.1 (RNA polymerase II large subunit )

HSP 1 Score: 53.1 bits (126), Expect = 2.0e-06
Identity = 31/87 (35.63%), Postives = 45/87 (51.72%), Query Frame = 0


Query: 1265 EAICYRAVLLGITKASLNTQSF--ISEASFQETARVLAKAALRGRIDWLRGLKENVVLGG 1324
            + + YR  L+ IT+  +N      +   SF+ET  +L  AA     D LRG+ EN++LG 
Sbjct: 1394 DTMTYRGHLMAITRHGINRNDTGPLMRCSFEETVDILLDAAAYAETDCLRGVTENIMLGQ 1453

Query: 1325 MIPVGTGFRELAHRSRQYNN-IPLETP 1349
            + P+GTG  EL        N I L+ P
Sbjct: 1454 LAPIGTGDCELYLNDEMLKNAIELQLP 1480

HSP 2 Score: 51.6 bits (122), Expect = 5.7e-06
Identity = 24/63 (38.10%), Postives = 42/63 (66.67%), Query Frame = 0


Query: 165 IQSNLREGLSLTEYIISCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIR 224
           ++++   GL+  E+     G R+G++DTAV+TS+ GY+ RRLV+ ++ I+V+    GT+R
Sbjct: 819 VENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYD--GTVR 878

Query: 225 GIL 228
             L
Sbjct: 879 NSL 879

HSP 3 Score: 46.6 bits (109), Expect = 1.8e-04
Identity = 21/33 (63.64%), Postives = 24/33 (72.73%), Query Frame = 0


Query: 311  LVELGEAVGIIAGQSIGEPGTQLTLRTFHTGGV 344
            LV  GE +G +A QSIGEP TQ+TL TFH  GV
Sbjct: 1077 LVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGV 1109

The following BLAST results are available for this feature:

BLAST of PI0016027 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q4VZP3	0.0e+00	98.23	DNA-directed RNA polymerase subunit beta'' OS=Cucumis sativus OX=3659 GN=rpoC2 P...	[more]
B1NWE0	0.0e+00	84.84	DNA-directed RNA polymerase subunit beta'' OS=Manihot esculenta OX=3983 GN=rpoC2...	[more]
Q0ZJ30	0.0e+00	85.24	DNA-directed RNA polymerase subunit beta'' OS=Vitis vinifera OX=29760 GN=rpoC2 P...	[more]
Q49L08	0.0e+00	84.33	DNA-directed RNA polymerase subunit beta'' OS=Eucalyptus globulus subsp. globulu...	[more]
B1A925	0.0e+00	84.69	DNA-directed RNA polymerase subunit beta'' OS=Carica papaya OX=3649 GN=rpoC2 PE=...	[more]

BLAST of PI0016027 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6B9M016	0.0e+00	98.53	DNA-directed RNA polymerase subunit beta'' OS=Cucumis melo subsp. melo OX=412675...	[more]
A0A1P8C7P3	0.0e+00	98.30	DNA-directed RNA polymerase subunit beta'' OS=Cucumis x hytivus OX=442738 GN=rpo...	[more]
A0A4Y5RCY8	0.0e+00	98.30	DNA-directed RNA polymerase subunit beta'' OS=Cucumis hystrix OX=396994 GN=rpoC2...	[more]
A0A218KG46	0.0e+00	98.23	DNA-directed RNA polymerase subunit beta'' OS=Cucumis sativus var. hardwickii OX...	[more]
A0A1X9Q1J9	0.0e+00	98.23	DNA-directed RNA polymerase subunit beta'' OS=Cucumis sativus OX=3659 GN=rpoC2 P...	[more]

BLAST of PI0016027 vs. NCBI nr


Match Name	E-value	Identity	Description
QHB75953.1	0.0e+00	98.53	RNA polymerase beta II subunit [Cucumis melo subsp. melo]	[more]
YP_009346475.1	0.0e+00	98.30	RNA polymerase beta' subunit [Cucumis x hytivus] >AOW71085.1 RNA polymerase beta...	[more]
Q4VZP3.1	0.0e+00	98.23	RecName: Full=DNA-directed RNA polymerase subunit beta''; AltName: Full=PEP; Alt...	[more]
YP_009004034.1	0.0e+00	98.23	RNA polymerase beta' subunit [Cucumis hystrix] >YP_247589.2 RNA polymerase beta'...	[more]
YP_004841773.1	0.0e+00	98.09	RNA polymerase beta'' subunit [Cucumis melo subsp. melo] >YP_009860063.1 RNA pol...	[more]

BLAST of PI0016027 vs. TAIR 10


Match Name	E-value	Identity	Description
ATCG00170.1	0.0e+00	80.62	DNA-directed RNA polymerase family protein	[more]
AT3G57660.1	6.3e-13	27.78	nuclear RNA polymerase A1	[more]
AT5G60040.1	5.0e-10	25.35	nuclear RNA polymerase C1	[more]
AT5G60040.2	5.0e-10	25.35	nuclear RNA polymerase C1	[more]
AT4G35800.1	2.0e-06	35.63	RNA polymerase II large subunit	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR012756	DNA-directed RNA polymerase, subunit beta''	TIGRFAM	TIGR02388	TIGR02388	coord: 8..506 e-value: 5.7E-143 score: 475.8
IPR012756	DNA-directed RNA polymerase, subunit beta''	HAMAP	MF_01324	RNApol_bact_RpoC2	coord: 6..1349 score: 12.343229
None	No IPR available	GENE3D	1.10.1790.20		coord: 1145..1282 e-value: 2.7E-34 score: 119.8
None	No IPR available	GENE3D	1.10.150.390		coord: 1283..1342 e-value: 9.9E-24 score: 84.6
None	No IPR available	PANTHER	PTHR19376:SF47	DNA-DIRECTED RNA POLYMERASE SUBUNIT BETA''	coord: 1..1348
None	No IPR available	PANTHER	PTHR19376	DNA-DIRECTED RNA POLYMERASE	coord: 1..1348
None	No IPR available	CDD	cd02655	RNAP_beta'_C	coord: 1142..1330 e-value: 7.26069E-72 score: 236.655
None	No IPR available	SUPERFAMILY	64484	beta and beta-prime subunits of DNA dependent RNA-polymerase	coord: 9..1342
IPR007083	RNA polymerase Rpb1, domain 4	PFAM	PF05000	RNA_pol_Rpb1_4	coord: 95..157 e-value: 4.9E-10 score: 39.3
IPR007081	RNA polymerase Rpb1, domain 5	PFAM	PF04998	RNA_pol_Rpb1_5	coord: 1195..1282 e-value: 3.5E-7 score: 29.9
IPR007081	RNA polymerase Rpb1, domain 5	PFAM	PF04998	RNA_pol_Rpb1_5	coord: 172..364 e-value: 2.9E-39 score: 135.1
IPR038120	RNA polymerase Rpb1, funnel domain superfamily	GENE3D	1.10.132.30		coord: 59..196 e-value: 9.0E-47 score: 160.6
IPR042102	RNA polymerase Rpb1, domain 3 superfamily	GENE3D	1.10.274.100	RNA polymerase Rpb1, domain 3	coord: 1..58 e-value: 1.0E-10 score: 43.9

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
PI0016027.1	PI0016027.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006351	transcription, DNA-templated
cellular_component	GO:0009507	chloroplast
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0003899	DNA-directed 5'-3' RNA polymerase activity
molecular_function	GO:0008270	zinc ion binding