PI0015124 (gene) Melon (PI 482460) v1

Overview


Name	PI0015124
Type	gene
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	Gag/pol protein
Location	chr05: 9711646 .. 9712232 (+)
RNA-Seq Expression	PI0015124
Synteny	PI0015124

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGGAATGTCCTCATTCCTCTATTCGAAATGCATCCCAGACCGCCAGGGATGCATATACCGCTGGACAAAGGCCAATGAAAAGGCCTGAGTCTACATCTTGGCCAGTATGTCTGACGTACTGAGCAAGAAACATGAGTCCATGGTCACTGCACGTCAGATCATGGAGTCCCTCCAGGAGATGTTTGGACAACCGTCCATTCAAATCCGACACAAGACTATTAAATACGTTTATAATGCCCGTATGAAGGAAGGTCAATCTGTTAGAGAACATGTTCTCGACATGATGGTCCAATTCAACGTGGCAGAAACCAACGGGGTGGTCATTGACGAGCAAAGTCAGGTATCCTTTATCTTAGAATCTCTTCCGAAGAGCTTCCTTCAATTCTGTAGCAATGCAGTTATGAACCAGATAGAGTATACCATGACTACCCTCCTTAACGAGTTGCAGACTTTTCAGTCTCTTATGAAAAATAAGGGACAGAAAGAAGGAGAGGCAAATGTTGCCCATTCCAAGAGGTTTCAGAAGGGTTCATCCTCTGGAACCAAGTCTGCACCTTCATCTTCTGGGACTAAGAAAATCTAG

mRNA sequence

ATGGAGGAATGTCCTCATTCCTCTATTCGAAATGCATCCCAGACCGCCAGGGATGCATATACCGCTGGACAAAGGCCAATGAAAAGGCCTGAGTCTACATCTTGGCCAATCATGGAGTCCCTCCAGGAGATGTTTGGACAACCGTCCATTCAAATCCGACACAAGACTATTAAATACGTTTATAATGCCCGTATGAAGGAAGGTCAATCTGTTAGAGAACATGTTCTCGACATGATGGTCCAATTCAACGTGGCAGAAACCAACGGGGTGGTCATTGACGAGCAAAGTCAGGTATCCTTTATCTTAGAATCTCTTCCGAAGAGCTTCCTTCAATTCTGTAGCAATGCAGTTATGAACCAGATAGAGTATACCATGACTACCCTCCTTAACGAGTTGCAGACTTTTCAGTCTCTTATGAAAAATAAGGGACAGAAAGAAGGAGAGGCAAATGTTGCCCATTCCAAGAGGTTTCAGAAGGGTTCATCCTCTGGAACCAAGTCTGCACCTTCATCTTCTGGGACTAAGAAAATCTAG

Coding sequence (CDS)

ATGGAGGAATGTCCTCATTCCTCTATTCGAAATGCATCCCAGACCGCCAGGGATGCATATACCGCTGGACAAAGGCCAATGAAAAGGCCTGAGTCTACATCTTGGCCAATCATGGAGTCCCTCCAGGAGATGTTTGGACAACCGTCCATTCAAATCCGACACAAGACTATTAAATACGTTTATAATGCCCGTATGAAGGAAGGTCAATCTGTTAGAGAACATGTTCTCGACATGATGGTCCAATTCAACGTGGCAGAAACCAACGGGGTGGTCATTGACGAGCAAAGTCAGGTATCCTTTATCTTAGAATCTCTTCCGAAGAGCTTCCTTCAATTCTGTAGCAATGCAGTTATGAACCAGATAGAGTATACCATGACTACCCTCCTTAACGAGTTGCAGACTTTTCAGTCTCTTATGAAAAATAAGGGACAGAAAGAAGGAGAGGCAAATGTTGCCCATTCCAAGAGGTTTCAGAAGGGTTCATCCTCTGGAACCAAGTCTGCACCTTCATCTTCTGGGACTAAGAAAATCTAG

Protein sequence

MEECPHSSIRNASQTARDAYTAGQRPMKRPESTSWPIMESLQEMFGQPSIQIRHKTIKYVYNARMKEGQSVREHVLDMMVQFNVAETNGVVIDEQSQVSFILESLPKSFLQFCSNAVMNQIEYTMTTLLNELQTFQSLMKNKGQKEGEANVAHSKRFQKGSSSGTKSAPSSSGTKKI

Homology

[Close]

BLAST of PI0015124 vs. ExPASy TrEMBL
Match: A0A5A7SMH8 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold219G002560 PE=4 SV=1)

HSP 1 Score: 203.0 bits (515), Expect = 1.0e-48
Identity = 122/195 (62.56%), Postives = 143/195 (73.33%), Query Frame = 0


Query: 1   MEECPHSSIRNASQTARDAY----------------TAGQRPMKRPES--TSWPIMESLQ 60
           +EECP     NA++T R+ Y                +  +   K+ ES  T+  IM+SLQ
Sbjct: 40  VEECPQVPAANATRTVREPYERWAKANEKARAYILASLSEVLAKKHESMLTAREIMDSLQ 99

Query: 61  EMFGQPSIQIRHKTIKYVYNARMKEGQSVREHVLDMMVQFNVAETNGVVIDEQSQVSFIL 120
           EMFGQ S QI+H  +KY+YNARM EG SVREHVL+MMV FNVAE NG VIDE SQVSFIL
Sbjct: 100 EMFGQASYQIKHDALKYIYNARMNEGASVREHVLNMMVHFNVAEMNGAVIDEASQVSFIL 159

Query: 121 ESLPKSFLQFCSNAVMNQIEYTMTTLLNELQTFQSLMKNKGQKEGEANVAHS-KRFQKGS 177
           ESLP+SFLQF SNAVMN+I YT+TTLLNELQTF+SLMK KGQK GEANVA S ++F +GS
Sbjct: 160 ESLPESFLQFRSNAVMNKIAYTLTTLLNELQTFESLMKIKGQK-GEANVATSTRKFHRGS 219

[Close]

BLAST of PI0015124 vs. ExPASy TrEMBL
Match: A0A5D3CPJ6 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold119G00040 PE=4 SV=1)

HSP 1 Score: 203.0 bits (515), Expect = 1.0e-48
Identity = 122/195 (62.56%), Postives = 143/195 (73.33%), Query Frame = 0


Query: 1   MEECPHSSIRNASQTARDAY----------------TAGQRPMKRPES--TSWPIMESLQ 60
           +EECP     NA++T R+ Y                +  +   K+ ES  T+  IM+SLQ
Sbjct: 40  VEECPQVPAANATRTVREPYERWAKANEKARAYILASLSEVLAKKHESMLTAREIMDSLQ 99

Query: 61  EMFGQPSIQIRHKTIKYVYNARMKEGQSVREHVLDMMVQFNVAETNGVVIDEQSQVSFIL 120
           EMFGQ S QI+H  +KY+YNARM EG SVREHVL+MMV FNVAE NG VIDE SQVSFIL
Sbjct: 100 EMFGQASYQIKHDALKYIYNARMNEGASVREHVLNMMVHFNVAEMNGAVIDEASQVSFIL 159

Query: 121 ESLPKSFLQFCSNAVMNQIEYTMTTLLNELQTFQSLMKNKGQKEGEANVAHS-KRFQKGS 177
           ESLP+SFLQF SNAVMN+I YT+TTLLNELQTF+SLMK KGQK GEANVA S ++F +GS
Sbjct: 160 ESLPESFLQFRSNAVMNKIAYTLTTLLNELQTFESLMKIKGQK-GEANVATSTRKFHRGS 219

[Close]

BLAST of PI0015124 vs. ExPASy TrEMBL
Match: A0A5A7TU93 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold74G002590 PE=4 SV=1)

HSP 1 Score: 203.0 bits (515), Expect = 1.0e-48
Identity = 122/195 (62.56%), Postives = 143/195 (73.33%), Query Frame = 0


Query: 1   MEECPHSSIRNASQTARDAY----------------TAGQRPMKRPES--TSWPIMESLQ 60
           +EECP     NA++T R+ Y                +  +   K+ ES  T+  IM+SLQ
Sbjct: 40  VEECPQVPAANATRTVREPYERWAKANEKARAYILASLSEVLAKKHESMLTAREIMDSLQ 99

Query: 61  EMFGQPSIQIRHKTIKYVYNARMKEGQSVREHVLDMMVQFNVAETNGVVIDEQSQVSFIL 120
           EMFGQ S QI+H  +KY+YNARM EG SVREHVL+MMV FNVAE NG VIDE SQVSFIL
Sbjct: 100 EMFGQASYQIKHDALKYIYNARMNEGASVREHVLNMMVHFNVAEMNGAVIDEASQVSFIL 159

Query: 121 ESLPKSFLQFCSNAVMNQIEYTMTTLLNELQTFQSLMKNKGQKEGEANVAHS-KRFQKGS 177
           ESLP+SFLQF SNAVMN+I YT+TTLLNELQTF+SLMK KGQK GEANVA S ++F +GS
Sbjct: 160 ESLPESFLQFRSNAVMNKIAYTLTTLLNELQTFESLMKIKGQK-GEANVATSTRKFHRGS 219

[Close]

BLAST of PI0015124 vs. ExPASy TrEMBL
Match: A0A5A7TWB9 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold133G00310 PE=4 SV=1)

HSP 1 Score: 203.0 bits (515), Expect = 1.0e-48
Identity = 122/195 (62.56%), Postives = 143/195 (73.33%), Query Frame = 0


Query: 1   MEECPHSSIRNASQTARDAY----------------TAGQRPMKRPES--TSWPIMESLQ 60
           +EECP     NA++T R+ Y                +  +   K+ ES  T+  IM+SLQ
Sbjct: 40  VEECPQVPAANATRTVREPYERWAKANEKARAYILASLSEVLAKKHESMLTAREIMDSLQ 99

Query: 61  EMFGQPSIQIRHKTIKYVYNARMKEGQSVREHVLDMMVQFNVAETNGVVIDEQSQVSFIL 120
           EMFGQ S QI+H  +KY+YNARM EG SVREHVL+MMV FNVAE NG VIDE SQVSFIL
Sbjct: 100 EMFGQASYQIKHDALKYIYNARMNEGASVREHVLNMMVHFNVAEMNGAVIDEASQVSFIL 159

Query: 121 ESLPKSFLQFCSNAVMNQIEYTMTTLLNELQTFQSLMKNKGQKEGEANVAHS-KRFQKGS 177
           ESLP+SFLQF SNAVMN+I YT+TTLLNELQTF+SLMK KGQK GEANVA S ++F +GS
Sbjct: 160 ESLPESFLQFRSNAVMNKIAYTLTTLLNELQTFESLMKIKGQK-GEANVATSTRKFHRGS 219

[Close]

BLAST of PI0015124 vs. ExPASy TrEMBL
Match: A0A5A7V6N0 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold749G00160 PE=4 SV=1)

HSP 1 Score: 203.0 bits (515), Expect = 1.0e-48
Identity = 122/195 (62.56%), Postives = 143/195 (73.33%), Query Frame = 0


Query: 1   MEECPHSSIRNASQTARDAY----------------TAGQRPMKRPES--TSWPIMESLQ 60
           +EECP     NA+QT R+ Y                +  +   K+ ES  T+  IM+SLQ
Sbjct: 40  VEECPQVPAANATQTVREPYERWAKANEKARAYILASLSEVLAKKHESMLTAREIMDSLQ 99

Query: 61  EMFGQPSIQIRHKTIKYVYNARMKEGQSVREHVLDMMVQFNVAETNGVVIDEQSQVSFIL 120
           EMFGQ S QI+H  +KY+YNARM EG SVREHVL++MV FNVAE NG VIDE SQVSFIL
Sbjct: 100 EMFGQASYQIKHDALKYIYNARMNEGASVREHVLNIMVHFNVAEMNGAVIDEASQVSFIL 159

Query: 121 ESLPKSFLQFCSNAVMNQIEYTMTTLLNELQTFQSLMKNKGQKEGEANVAHS-KRFQKGS 177
           ESLP+SFLQF SNAVMN+I YT+TTLLNELQTF+SLMK KGQK GEANVA S ++F +GS
Sbjct: 160 ESLPESFLQFRSNAVMNKIAYTLTTLLNELQTFESLMKIKGQK-GEANVATSTRKFHRGS 219

[Close]

BLAST of PI0015124 vs. NCBI nr
Match: KAA0044955.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 203.0 bits (515), Expect = 2.2e-48
Identity = 122/195 (62.56%), Postives = 143/195 (73.33%), Query Frame = 0


Query: 1   MEECPHSSIRNASQTARDAY----------------TAGQRPMKRPES--TSWPIMESLQ 60
           +EECP     NA++T R+ Y                +  +   K+ ES  T+  IM+SLQ
Sbjct: 40  VEECPQVPAANATRTVREPYERWAKANEKARAYILASLSEVLAKKHESMLTAREIMDSLQ 99

Query: 61  EMFGQPSIQIRHKTIKYVYNARMKEGQSVREHVLDMMVQFNVAETNGVVIDEQSQVSFIL 120
           EMFGQ S QI+H  +KY+YNARM EG SVREHVL+MMV FNVAE NG VIDE SQVSFIL
Sbjct: 100 EMFGQASYQIKHDALKYIYNARMNEGASVREHVLNMMVHFNVAEMNGAVIDEASQVSFIL 159

Query: 121 ESLPKSFLQFCSNAVMNQIEYTMTTLLNELQTFQSLMKNKGQKEGEANVAHS-KRFQKGS 177
           ESLP+SFLQF SNAVMN+I YT+TTLLNELQTF+SLMK KGQK GEANVA S ++F +GS
Sbjct: 160 ESLPESFLQFRSNAVMNKIAYTLTTLLNELQTFESLMKIKGQK-GEANVATSTRKFHRGS 219

[Close]

BLAST of PI0015124 vs. NCBI nr
Match: KAA0048404.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 203.0 bits (515), Expect = 2.2e-48
Identity = 122/195 (62.56%), Postives = 143/195 (73.33%), Query Frame = 0


Query: 1   MEECPHSSIRNASQTARDAY----------------TAGQRPMKRPES--TSWPIMESLQ 60
           +EECP     NA++T R+ Y                +  +   K+ ES  T+  IM+SLQ
Sbjct: 39  VEECPQVPAANATRTVREPYERWAKANEKARAYILASLSEVLAKKHESMLTAREIMDSLQ 98

Query: 61  EMFGQPSIQIRHKTIKYVYNARMKEGQSVREHVLDMMVQFNVAETNGVVIDEQSQVSFIL 120
           EMFGQ S QI+H  +KY+YNARM EG SVREHVL+MMV FNVAE NG VIDE SQVSFIL
Sbjct: 99  EMFGQASYQIKHDALKYIYNARMNEGASVREHVLNMMVHFNVAEMNGAVIDEASQVSFIL 158

Query: 121 ESLPKSFLQFCSNAVMNQIEYTMTTLLNELQTFQSLMKNKGQKEGEANVAHS-KRFQKGS 177
           ESLP+SFLQF SNAVMN+I YT+TTLLNELQTF+SLMK KGQK GEANVA S ++F +GS
Sbjct: 159 ESLPESFLQFRSNAVMNKIAYTLTTLLNELQTFESLMKIKGQK-GEANVATSTRKFHRGS 218

[Close]

BLAST of PI0015124 vs. NCBI nr
Match: TYK14550.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 203.0 bits (515), Expect = 2.2e-48
Identity = 122/195 (62.56%), Postives = 143/195 (73.33%), Query Frame = 0


Query: 1   MEECPHSSIRNASQTARDAY----------------TAGQRPMKRPES--TSWPIMESLQ 60
           +EECP     NA++T R+ Y                +  +   K+ ES  T+  IM+SLQ
Sbjct: 40  VEECPQVPAANATRTVREPYERWAKANEKARAYILASLSEVLAKKHESMLTAREIMDSLQ 99

Query: 61  EMFGQPSIQIRHKTIKYVYNARMKEGQSVREHVLDMMVQFNVAETNGVVIDEQSQVSFIL 120
           EMFGQ S QI+H  +KY+YNARM EG SVREHVL+MMV FNVAE NG VIDE SQVSFIL
Sbjct: 100 EMFGQASYQIKHDALKYIYNARMNEGASVREHVLNMMVHFNVAEMNGAVIDEASQVSFIL 159

Query: 121 ESLPKSFLQFCSNAVMNQIEYTMTTLLNELQTFQSLMKNKGQKEGEANVAHS-KRFQKGS 177
           ESLP+SFLQF SNAVMN+I YT+TTLLNELQTF+SLMK KGQK GEANVA S ++F +GS
Sbjct: 160 ESLPESFLQFRSNAVMNKIAYTLTTLLNELQTFESLMKIKGQK-GEANVATSTRKFHRGS 219

[Close]

BLAST of PI0015124 vs. NCBI nr
Match: KAA0054490.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 203.0 bits (515), Expect = 2.2e-48
Identity = 122/195 (62.56%), Postives = 143/195 (73.33%), Query Frame = 0


Query: 1   MEECPHSSIRNASQTARDAY----------------TAGQRPMKRPES--TSWPIMESLQ 60
           +EECP     NA++T R+ Y                +  +   K+ ES  T+  IM+SLQ
Sbjct: 40  VEECPQVPAANATRTVREPYERWAKANEKARAYILASLSEVLAKKHESMLTAREIMDSLQ 99

Query: 61  EMFGQPSIQIRHKTIKYVYNARMKEGQSVREHVLDMMVQFNVAETNGVVIDEQSQVSFIL 120
           EMFGQ S QI+H  +KY+YNARM EG SVREHVL+MMV FNVAE NG VIDE SQVSFIL
Sbjct: 100 EMFGQASYQIKHDALKYIYNARMNEGASVREHVLNMMVHFNVAEMNGAVIDEASQVSFIL 159

Query: 121 ESLPKSFLQFCSNAVMNQIEYTMTTLLNELQTFQSLMKNKGQKEGEANVAHS-KRFQKGS 177
           ESLP+SFLQF SNAVMN+I YT+TTLLNELQTF+SLMK KGQK GEANVA S ++F +GS
Sbjct: 160 ESLPESFLQFRSNAVMNKIAYTLTTLLNELQTFESLMKIKGQK-GEANVATSTRKFHRGS 219

[Close]

BLAST of PI0015124 vs. NCBI nr
Match: KAA0061339.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 203.0 bits (515), Expect = 2.2e-48
Identity = 122/195 (62.56%), Postives = 143/195 (73.33%), Query Frame = 0


Query: 1   MEECPHSSIRNASQTARDAY----------------TAGQRPMKRPES--TSWPIMESLQ 60
           +EECP     NA+QT R+ Y                +  +   K+ ES  T+  IM+SLQ
Sbjct: 40  VEECPQVPAANATQTVREPYERWAKANEKARAYILASLSEVLAKKHESMLTAREIMDSLQ 99

Query: 61  EMFGQPSIQIRHKTIKYVYNARMKEGQSVREHVLDMMVQFNVAETNGVVIDEQSQVSFIL 120
           EMFGQ S QI+H  +KY+YNARM EG SVREHVL++MV FNVAE NG VIDE SQVSFIL
Sbjct: 100 EMFGQASYQIKHDALKYIYNARMNEGASVREHVLNIMVHFNVAEMNGAVIDEASQVSFIL 159

Query: 121 ESLPKSFLQFCSNAVMNQIEYTMTTLLNELQTFQSLMKNKGQKEGEANVAHS-KRFQKGS 177
           ESLP+SFLQF SNAVMN+I YT+TTLLNELQTF+SLMK KGQK GEANVA S ++F +GS
Sbjct: 160 ESLPESFLQFRSNAVMNKIAYTLTTLLNELQTFESLMKIKGQK-GEANVATSTRKFHRGS 219

The following BLAST results are available for this feature:

BLAST of PI0015124 vs.


Match Name	E-value	Identity	Description

BLAST of PI0015124 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7SMH8	1.0e-48	62.56	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold219G0025...	[more]
A0A5D3CPJ6	1.0e-48	62.56	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold119G0004...	[more]
A0A5A7TU93	1.0e-48	62.56	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold74G00259...	[more]
A0A5A7TWB9	1.0e-48	62.56	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold133G0031...	[more]
A0A5A7V6N0	1.0e-48	62.56	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold749G0016...	[more]

BLAST of PI0015124 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0044955.1	2.2e-48	62.56	gag/pol protein [Cucumis melo var. makuwa]	[more]
KAA0048404.1	2.2e-48	62.56	gag/pol protein [Cucumis melo var. makuwa]	[more]
TYK14550.1	2.2e-48	62.56	gag/pol protein [Cucumis melo var. makuwa]	[more]
KAA0054490.1	2.2e-48	62.56	gag/pol protein [Cucumis melo var. makuwa]	[more]
KAA0061339.1	2.2e-48	62.56	gag/pol protein [Cucumis melo var. makuwa]	[more]

BLAST of PI0015124 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PFAM	PF14223	Retrotran_gag_2	coord: 31..135 e-value: 3.6E-14 score: 52.7
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 144..177
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 155..177
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..33
None	No IPR available	PANTHER	PTHR35317	OS04G0629600 PROTEIN	coord: 36..166
None	No IPR available	PANTHER	PTHR35317:SF8	POLYPROTEIN-LIKE PROTEIN	coord: 36..166

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
PI0015124.1	PI0015124.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding