PI0012320 (gene) Melon (PI 482460) v1

Overview
NamePI0012320
Typegene
OrganismCucumis metuliferus (Melon (PI 482460) v1)
DescriptionRetrotransposon gag protein
Locationchr08: 5339924 .. 5346442 (-)
RNA-Seq ExpressionPI0012320
SyntenyPI0012320
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACTACATTGCTCACTTCTTTTGTACAAGGTGGAAATGTGAAAGTTGCAAAATGTGGAGTTTGTGGTCTCATTGGACATCCTAATGACAAGTGTCCCGACCTTGTGGAAGAGGCAAATGTCATTAGGAAGTACGATCCTCATGGAAACACTTACAATGCCGGTTGGAGAGACAACCCTAACCTTAGATGGGGAAATGACGCCCAACGACCCGCACAAGCAACTTCATCCTCAAATAATCAAGGTAGTAATTTGGAAGATTTGGTAAAAGCTCTTGCTACCAATACAATTTCTTTCCAAAATGAAATGAAGCAACAAATGTCCCAATTGACCAATGCAATAAGCAAACTAGAAGGTAAAGGCAAGCTTCCAGCTCAGCCCGATCACGCAAATGTAAGTGCCATCTCGCTTAGAAGCGGTAAAATTCTGGAAACCCCTCCAAGCGAAGAAAAGGTACCATCTATCCCTACCCTTCTAGTAGATGAAAATAAGAAAAAGGAAGAAAATTTAGAAAACAATGCCTCTTCTTCTTCTTCAAAAGGTAAAACTAAAATTTCTGATTTTTCCCCTTTTGTTCCTAACGCTCCTTTTCCTTCCAGATTGGCCCCTAAAAAGAAAGAAACACCAAAGGAAGAAGAACTGCTGGAGATGTTTAGGAAAGTGCAAATCAACCTACCTCTGCTCGATGCGATCCAACAAGTCCCGAGGTATGCGAAGTTCTTAAAGGAATTATGCACAAACAAAAGAAAATCAAGGAGAAGGCAACGGTAAGTCATAACGTTTCTGCTTTATTAAAAACTTCAATACCTGCAAAGCAAAACGACCCAGGTATGTTTTCTCTTCCTTGTATTATAGGAAATAGGCAAATTTCAAGTGCCATGTTAGACTTAGGAGCTTCCATCAATGTCATGCCATATTCTGTTTTTAAAGATCTTGAATTAAATAATTTGCAAAAGACAAATGTATGCATTCAACTTGCTGATAGATCCTTTATATCACCGCTAGGAATAGTTGAAGATGTGCTAGTAAAATAGACAAATTAATATTTCCTGCGGACTTTTACATTCTTGAAATGAATGATGCATGTATGAAACCTTCCCATTCAATTCTTCTAGGTAGACCTTTCCTTAAGACTGCTAAAGCTATCATAGATGTAGATAAAGGTTGCCTAAGTGTAGAATTTGATGGAGACATAGTGACATTTAATATTTTTGAATCTATGAAATTTCCTGAAGAATGCTTCTCTGTATGCTCCTTGCAATTGCATGAAAATTTTGAACAAATTCCTATAATAGAACAATTTGCTAATCTAGACTTAGAAGAAATTGAAGAACACATTTGTTTGCATGAATTTAATAAAGAGGAAGAAATTGTAGAAATAGAAAATAATGAAGAAATAGACCTTGAAGGAATAGATCCTAACTCAATTTCTTTTTCTCCACAGGAACCAGGGATCGAGCTTAAGACTCTCCCCCCAAACCTGAAATACGTATTCTTAGGAGAAAAGAATACGAGTCCTGTAATAATTTCAAGGGAACTACATCAAGACCAAGAAGAAAAACTAATCAAAGTCTTGAAGAACAAAAGAAAAGCTTTAGGATGGACTTTGGAAGACCTCAAAGGTATTTCCCCTTCTTTTTGCACTCATAGAATTATTCTAGAGGAAGGAGCCAAAGACAAAGTCCAACCACAAAGGAGGCTAAACCCTATCTTAAGAGATGTCGTACTCAAAGAAATACTCAAGCTCAAAGACGCTGGGATCATCTACCCCGTTCCTGACAGCACTTGGGTAAGTCTGATCCACGTTGTGCCAAAAAAGACGGGAATGACGGAAGTAGAGAACGAAAAAGGTGAAATGATTCCAACTCGAGTTCAGAACGGATGGCGAATGTGCATCGACTACCGCAAATTAAATGAGGTAACAAAGAAAGATCACTTTCCTTTACCTTTTCTAGATCAAATGATAGAAAGATTAGCTGGTAGGTCGTATTTCTGTTTTCTTGATGGCTTTTCTGGATTTTATCAAATACCAATTGCATGCGAAGATCAAAGTAAAACAACTTTTACATGCGATTACGGTACTTATGCATTTAGACGTATGCCATTTGGATTATGTAATGCACCTGGCACATTCCAACGTTGCATGATGAGTATATTTTCTGATTTTATAGAAAAATGCATAGAAGTCTTTATGGATGATTTCACTGTGTATGGTGATAATTTTGATGCATGCTTGAACAGTTTAGAACAAATTCTAAATAGATGCATAGAAACCAACTTAGTGCTTAACTATGAAAAATGTCATTTTATGGTTTCTCATGGCATAGTTTTAGGACATCTAGTATCTTCAAAAGGAATAGAAGTTGACAAAGCAAAAATAGATATTATTCAAAAATTACCCTATCCTAAATGCTTAAAAGATGTTAGATCATTTTTAGGATCGGCCGGATTTTATAGAAGATTTATTAAAGATTTCTCTAGAATTGCTTTACCACTAACTTCTCTTCTTCAGAAAGATGTGCCTTTTATAATAGATGACAAATGCAAGCAAGCATTTGATGAGCTAAAATCAAGGTTAGTATCTACTCCTATACTTCAATCTCCTAACTGGAATTTACCTTTCGAAATCATGTGCGATGCTAGCAACTTAGCATTAGGAGCAGTACTAGGACAAAGAGTAGATAAGAAATTGCATGCCATTTATTATGCATCTAGAACACTTAATCAGGCACAATCAAATTACACCACCACAGAAAAAGAATTTCTTGCAATAGTCTTCGCTTTAGACAAATTTAGAAGCTATGTGATAGGCTCACCAATCATCATTTACACTGACCACGCCGCAGTTAGGTACTTAGTTTCTAAGAAAGAATCAAAACCTAGGCTAGTTAGATGGGTTTTACTTCTTCAAGAATTCAACCTAACAATTAAAGATAGAAAAGGAGCCAACAATGCCATAGCAGATCACCTAAGCAGAATAGAGCAAGAACCTGAAAATTCACCCATTAGAGAAGACTTCCCTGACGAGCATCTTTTCCAAACTGACATCTCAACACCATGGTATGCCGACCTTGTGAATTTCATAACAACAGGTAACTATCCCCCTGACTTTTCTTTTTCTCAAAAATCAAAATTACGTAGTGATGCCAAATATTACTTCTGGGAATCCCATTCCTTTGGAAATATTGTTCTGATCAAGTAATTAGAAAATGTGTACCTGAGCATGAATTTAATTCAATTCTTTTATTTTGTCATTCTCATGCATGCGGAGGTCACTTTAGTCCAAAAAGAACTGCTAGAAAAATTTTAGATAGTGGATTTTTCTGGAAAACACTATTCTCTGATTCTTATAAATTCTGCAAAGCATGTGAAAACTGTCAAAGAACTGGATCTTTATCTAGGAGAAATGAAATGCCTTTAAATCCAATCTTAACTTGTGAAATTTTTACATTTGGGGCATGGATTTCATGGGTCCTTTTCCTCCTTCACATGGCTATCTTTACATTTTACTAGCAGTAGATTATGTATCGAAGTGGGTCGAAGCAATCCCCACTAGGACTAATGATTCTTCCACTGTTTCAGGATTTCTCATTTCTAATATCTTTTCTAGATTCGGCATCCCTCGTGCAATCATAAGCGACCAAGGAACTCACTTTTGCAATAGAACCATTGAAGCGCTAATGAGAAAATACGGAGTCCACCACCGCGTTTCAACTCCGTATCATCCTCAAGCCAATGGACAAGCAGAAGCCTCAAATAAAGAAATCAAGAACATCTTGGAGAAAACAGTCAACACAAGTAGAAAAGACTGGAGCACACGCTTGAACGATGCATTGTGGGCATACCGAACTGCCTACAAAACTCCAATTGGTACTTCTCCATTTAAACTTGTGTTTGGTAAGCCTTGCCATTTACCTGTAGAAATAGAACATAAAGCATATTGGGCAGTTAGGCAATGCAATTATAATCTCCTAGATGCTAAAAATAAAAGATTCCTTGACATGCTAGAATTAGAAGAATTAAGATTAGAAGCATATGAAAACTCTAGGATTTACAAAGAAAAGACTAAGCTTTTGCATGATAAGAAAATCCTTAGAAAACAATTTTCAATTGGACAAAAAGTGCTTCTTTACAATTCTTCTATCAATTTAATGCCTGGGAAATTAAAATCTAGATGGATAGGACCTTTTGTTATTTCTGACTTTTCTACCTTTGGTGTAGTTTCCATTAAAAGTTTACAAACAGGAAAAATTTTCAAAGTCAATGGGCATAGACTTAAAATCTTTCATGAAGGAGAGACTGCTCAACAAAGTTCAATAGAAATCCTCACTCTTCCCTTCTACAACTAGCCCGAAAGCACGGTCGAGCTACGACCTTAAAAACTTGCGCTTCCTGGAGGCAGCCAGGCGTCAAAATTTTAATGCTTTCTGTCTTTACTTTCTTTAAATTCTTTCTTTAAATTTCCGCATTTCAATAAATCTAACAGACTTTTCAATTTTTCTTACACAGGAAATTCTTAAACAAATTCCACAATGGAGGTATAAACAAAAAGAATCAAAGGCAACAAACAACTTTGCTTGAAAGATCTCAATTCTCAAAAGTAAGGGGAGTTTTTCTGTTCCCCTTACCTTTTAGCTAGCAATTAATATGCTTTGAGGACAAAGTCATCTTTTAAGTGAGGGGTGTTGGGCATTCCTTAATTTTTGCTATAAATGCCTTACACATCACTTGCTTGTCCATAAAAATAGAAACTCAAAAATGCATATCCCAAAAATTTTTTAGCCAATGTCTAAATTCTTCCTAAAAGCATGAACAATACAACTTCAATATTACAAAAAGCATGCTCCAAAAATTTTTTCTTTCTATATGCATATCTTTTACCTTACCCTTGGATGAATGCATGATTGAGAAAAATGAATGCTTGCTTGACTGATTGATTGCATGTACAAAATAAAAACGCATGGATGTTATTCCCTAGCAAAGTCTTATATAATGATTGCCTATGACGCACCCTTCTAAGTAATCTTTGTCTTGACTTTTAAATCGAATAAAGAACAATGTAGAAATTAAGCCTGATTTTTAAACTTTTCACCAATGACCATGAATTAGAAAAAACCCCTTATCTAGCCATAACGAACCTAGAATCCTTCAGAAAAGAGTAGGATGCTTAAATTCGCTTCCCATCACCTCGATAGAACGGTCAAACATCGAAACTATTAGAATAAAGCCAAGCTTAGAGTTAGCCAAACCGGGGCTAAGCAAATGCTAGCTACCAAAAATAGAATCCCAAATCAAAAGTAGCAAAAGCATACTTTTAGCAAATGGCAAAGTCCATATCCTCTCACAAAAATATAAAATATATATAGACCTATATATATTTATATATTTACAAAAAAAAACTGATGAGAGAGAAAATTCTAGTACGGTTAAGTCGAACGATAGGATTCTTTCCGTGATCAGTTAGGATTACCCGATGTTAGTGTGGTATGAATCCCTATGGAAAAAGCCTATCCTTTGCCTTAGTAAAACAAGTTACAAACTCATTCCTGGAATTTTCTATATTAGCTTCAATGCGTTGACCGAGGGCCAAGTATAAGGAGAGATCCTTCCCGCTTCAGTGTAGAGAGAAAGCAAGCCTAGGGCGTTTTTTAACTCTTTCAAAGCATGTCTAGCGCGTCGGAGTAGCAAAATTAGACCGTTTTCTCTAAACATGACCACCGTTGATCTAAACTTTTTAAAATCAGAGTCCTTGATCAATCGCTTGTCTCTTTAAAACATTTAAAACAAAATTCAAAGATTACTAGTATGATTGTCGAGGCATGAATATTCTACTTTGCATATTTGTTTGAAAACATCAATAAATGTTTGCATGAATGCTTGAGAAATTTAATTTTTGCAAAATTGCTTGAATACCTTGCATGGTGAATGAATGAATGTTAGCATATAAACACACTTTAATCTTTACCTCAATCGGGACGATCAAGATTTAAGGGAGGGGTTTTGATAAGACTATTTTCTTAGGAAAATATCTATCTTAATTAATAATAATAAATTGCAAATACTTATTAATATTGCATTTTTGTATAGGAAATGACACAAAGCCCCTCTAACAACCCTTGTGCACGAAAATAAGCTAAAACAAGCTCATCGCGGCCAAAAGAGAAGAAATACAAACTCGAGGGTAAAATGGTAATTTTCCCGAAAGCATTCAAAAACCTTCTTCGCGGCAAAACTACTTCAGAACGCGTAGCTCATTGCAGACTGCCTACTTCGCGAGGCAAGTGCTTCACAACTAGAGCTCTGCGAGATACTTCATCTGCAGAAGTACACATCATCCTTGCCGCACAACGCAAACGTTCAATCGCCAACTCACCGAATCAAATTCAAAGTTCAAACGCATGCAATCTTCATCAGCTCGCGGAACGCATCATCTCACTTGTTCAGCTCACAACCTTCAGTTCGCCTAAAAACGGTTACTTTAACCGTCAAGCCCAAGCCCACGGCCCAAGCCCAATGTAA

mRNA sequence

ATGACTACATTGCTCACTTCTTTTGTACAAGGTGGAAATGTGAAAGTTGCAAAATGTGGAGTTTGTGGTCTCATTGGACATCCTAATGACAAGTGTCCCGACCTTGTGGAAGAGGCAAATGTCATTAGGAAGTACGATCCTCATGGAAACACTTACAATGCCGGTTGGAGAGACAACCCTAACCTTAGATGGGGAAATGACGCCCAACGACCCGCACAAGCAACTTCATCCTCAAATAATCAAGGTAGTAATTTGGAAGATTTGGTAAAAGCTCTTGCTACCAATACAATTTCTTTCCAAAATGAAATGAAGCAACAAATGTCCCAATTGACCAATGCAATAAGCAAACTAGAAGGTAAAGGCAAGCTTCCAGCTCAGCCCGATCACGCAAATGTAAGTGCCATCTCGCTTAGAAGCGGTAAAATTCTGGAAACCCCTCCAAGCGAAGAAAAGGTACCATCTATCCCTACCCTTCTAGTAGATGAAAATAAGAAAAAGGAAGAAAATTTAGAAAACAATGCCTCTTCTTCTTCTTCAAAAGCTAAAACAAGCTCATCGCGGCCAAAAGAGAAGAAATACAAACTCGAGGGTAAAATGGTAATTTTCCCGAAAGCATTCAAAAACCTTCTTCGCGGCAAAACTACTTCAGAACGCGTAGCTCATTGCAGACTGCCTACTTCGCGAGGCAAGTGCTTCACAACTAGAGCTCTGCGAGATACTTCATCTGCAGAAGTACACATCATCCTTGCCGCACAACGCAAACGTTCAATCGCCAACTCACCGAATCAAATTCAAAGTTCAAACGCATGCAATCTTCATCAGCTCGCGGAACGCATCATCTCACTTGTTCAGCTCACAACCTTCAGTTCGCCTAAAAACGGTTACTTTAACCGTCAAGCCCAAGCCCACGGCCCAAGCCCAATGTAA

Coding sequence (CDS)

ATGACTACATTGCTCACTTCTTTTGTACAAGGTGGAAATGTGAAAGTTGCAAAATGTGGAGTTTGTGGTCTCATTGGACATCCTAATGACAAGTGTCCCGACCTTGTGGAAGAGGCAAATGTCATTAGGAAGTACGATCCTCATGGAAACACTTACAATGCCGGTTGGAGAGACAACCCTAACCTTAGATGGGGAAATGACGCCCAACGACCCGCACAAGCAACTTCATCCTCAAATAATCAAGGTAGTAATTTGGAAGATTTGGTAAAAGCTCTTGCTACCAATACAATTTCTTTCCAAAATGAAATGAAGCAACAAATGTCCCAATTGACCAATGCAATAAGCAAACTAGAAGGTAAAGGCAAGCTTCCAGCTCAGCCCGATCACGCAAATGTAAGTGCCATCTCGCTTAGAAGCGGTAAAATTCTGGAAACCCCTCCAAGCGAAGAAAAGGTACCATCTATCCCTACCCTTCTAGTAGATGAAAATAAGAAAAAGGAAGAAAATTTAGAAAACAATGCCTCTTCTTCTTCTTCAAAAGCTAAAACAAGCTCATCGCGGCCAAAAGAGAAGAAATACAAACTCGAGGGTAAAATGGTAATTTTCCCGAAAGCATTCAAAAACCTTCTTCGCGGCAAAACTACTTCAGAACGCGTAGCTCATTGCAGACTGCCTACTTCGCGAGGCAAGTGCTTCACAACTAGAGCTCTGCGAGATACTTCATCTGCAGAAGTACACATCATCCTTGCCGCACAACGCAAACGTTCAATCGCCAACTCACCGAATCAAATTCAAAGTTCAAACGCATGCAATCTTCATCAGCTCGCGGAACGCATCATCTCACTTGTTCAGCTCACAACCTTCAGTTCGCCTAAAAACGGTTACTTTAACCGTCAAGCCCAAGCCCACGGCCCAAGCCCAATGTAA

Protein sequence

MTTLLTSFVQGGNVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPHGNTYNAGWRDNPNLRWGNDAQRPAQATSSSNNQGSNLEDLVKALATNTISFQNEMKQQMSQLTNAISKLEGKGKLPAQPDHANVSAISLRSGKILETPPSEEKVPSIPTLLVDENKKKEENLENNASSSSSKAKTSSSRPKEKKYKLEGKMVIFPKAFKNLLRGKTTSERVAHCRLPTSRGKCFTTRALRDTSSAEVHIILAAQRKRSIANSPNQIQSSNACNLHQLAERIISLVQLTTFSSPKNGYFNRQAQAHGPSPM
Homology
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BLAST of PI0012320 vs. ExPASy TrEMBL
Match: A0A1S3CQU8 (uncharacterized protein LOC103503291 OS=Cucumis melo OX=3656 GN=LOC103503291 PE=4 SV=1)

HSP 1 Score: 255.4 bits (651), Expect = 3.1e-64
Identity = 126/181 (69.61%), Postives = 154/181 (85.08%), Query Frame = 0 

Query: 1   MTTLLTSFVQGGNVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPHGNTYNAGWRDNP 60
           MTTLLTSFVQG  +KV KCGVCGL+G+PNDKCP ++E+ N++R+YDPHGNTYN GWRDNP
Sbjct: 56  MTTLLTSFVQGTALKVTKCGVCGLVGYPNDKCPKVIEDVNIVRRYDPHGNTYNLGWRDNP 115

Query: 61  NLRWGNDAQRPAQATSSSNNQGSNLEDLVKALATNTISFQNEMKQQMSQLTNAISKLEGK 120
           NLRWGND Q+  QA  +S+NQG+NLED++KALATNT+SFQ +MKQQM+QLT  ISK++GK
Sbjct: 116 NLRWGNDNQKHTQAPPTSSNQGTNLEDIIKALATNTLSFQQKMKQQMTQLTTVISKMDGK 175

Query: 121 GKLPAQPDHANVSAISLRSGKILETPPS-EEKVPSIPTLLVDENKKKEENLENNASSSSS 180
           GKLPAQPDH NVSAISLRSGKIL+TP + E+KV S    L  +N+ KEE +E N+SSS+S
Sbjct: 176 GKLPAQPDHVNVSAISLRSGKILDTPTTKEKKVTSKLLPLNSKNQSKEEKVETNSSSSNS 235

[Close]
BLAST of PI0012320 vs. ExPASy TrEMBL
Match: E5GBZ4 (Retrotransposon gag protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1)

HSP 1 Score: 255.0 bits (650), Expect = 4.0e-64
Identity = 127/181 (70.17%), Postives = 155/181 (85.64%), Query Frame = 0 

Query: 1   MTTLLTSFVQGGNVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPHGNTYNAGWRDNP 60
           MTTLLTSFVQG  +KV KCGVC L+GHPNDKCP+++E+ N++RKYDP+GNTYN+GWRDNP
Sbjct: 57  MTTLLTSFVQGTPLKVTKCGVCRLVGHPNDKCPEVIEDVNIVRKYDPYGNTYNSGWRDNP 116

Query: 61  NLRWGNDAQRPAQATSSSNNQGSNLEDLVKALATNTISFQNEMKQQMSQLTNAISKLEGK 120
           NLRWGND Q+  QA  +S+NQG+NLED++KALATNT+SFQ EMKQQM+QLT AISK++GK
Sbjct: 117 NLRWGNDNQKHTQAPPTSSNQGTNLEDIIKALATNTLSFQQEMKQQMTQLTTAISKMDGK 176

Query: 121 GKLPAQPDHANVSAISLRSGKILETPPS-EEKVPSIPTLLVDENKKKEENLENNASSSSS 180
           GKLPAQPD+ANVSAISLRSGKIL+TP + E+KV S    L  +N+ KEE +E N S S+S
Sbjct: 177 GKLPAQPDYANVSAISLRSGKILDTPTTKEKKVTSKLLPLNSKNESKEEKVETNLSPSNS 236

[Close]
BLAST of PI0012320 vs. ExPASy TrEMBL
Match: A0A5D3CRR8 (Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold363G00610 PE=4 SV=1)

HSP 1 Score: 252.7 bits (644), Expect = 2.0e-63
Identity = 125/181 (69.06%), Postives = 154/181 (85.08%), Query Frame = 0 

Query: 1   MTTLLTSFVQGGNVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPHGNTYNAGWRDNP 60
           MTTLLTSFVQG  +KV KCGVCGL+GHPNDKCP+++E+ N++RKYDPHGNTYN+GWRDNP
Sbjct: 142 MTTLLTSFVQGTPLKVTKCGVCGLVGHPNDKCPEVIEDVNIVRKYDPHGNTYNSGWRDNP 201

Query: 61  NLRWGNDAQRPAQATSSSNNQGSNLEDLVKALATNTISFQNEMKQQMSQLTNAISKLEGK 120
           NLRWGND Q+  QA S+S+NQG+NLED++KALATNT+SFQ EMKQQM+QLT AISK++GK
Sbjct: 202 NLRWGNDNQKHTQAPSTSSNQGTNLEDIIKALATNTLSFQQEMKQQMTQLTTAISKMDGK 261

Query: 121 GKLPAQPDHANVSAISLRSGKILETPPS-EEKVPSIPTLLVDENKKKEENLENNASSSSS 180
           GKL AQ ++ANVSA+SLRSGKIL+TP + E+K  S P  L  +N+ KEE +E N S  +S
Sbjct: 262 GKLSAQSNYANVSAVSLRSGKILDTPTTKEKKATSKPLPLNTKNECKEEKIETNPSPYNS 321

[Close]
BLAST of PI0012320 vs. ExPASy TrEMBL
Match: A0A5A7VE49 (Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold638G00600 PE=4 SV=1)

HSP 1 Score: 252.3 bits (643), Expect = 2.6e-63
Identity = 126/181 (69.61%), Postives = 154/181 (85.08%), Query Frame = 0 

Query: 1   MTTLLTSFVQGGNVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPHGNTYNAGWRDNP 60
           MTTLLTSFVQG  +KV KCGVCGL+GHPNDK P+++E+ N++R+YDPHGNTYN+GWRDNP
Sbjct: 33  MTTLLTSFVQGTPLKVTKCGVCGLVGHPNDKYPEVIEDVNIVRRYDPHGNTYNSGWRDNP 92

Query: 61  NLRWGNDAQRPAQATSSSNNQGSNLEDLVKALATNTISFQNEMKQQMSQLTNAISKLEGK 120
            LRWGND Q+  QA S+S+NQG+NLED++KALA NT+SFQ EMKQQM+QLT AISK++GK
Sbjct: 93  KLRWGNDNQKHIQAPSTSSNQGTNLEDIIKALAINTLSFQQEMKQQMTQLTTAISKMDGK 152

Query: 121 GKLPAQPDHANVSAISLRSGKILETPPS-EEKVPSIPTLLVDENKKKEENLENNASSSSS 180
           GKLPAQP+HANVSAISLRSGKIL+TP + E+KV S    L  +N+ KEEN+E N S S+ 
Sbjct: 153 GKLPAQPNHANVSAISLRSGKILDTPTTKEKKVTSKLLPLNSKNESKEENVETNPSPSNI 212

[Close]
BLAST of PI0012320 vs. ExPASy TrEMBL
Match: A0A5A7VQ60 (Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1704G00030 PE=4 SV=1)

HSP 1 Score: 251.1 bits (640), Expect = 5.8e-63
Identity = 137/225 (60.89%), Postives = 170/225 (75.56%), Query Frame = 0 

Query: 2   TTLLTSFVQGGNVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPHGNTYNAGWRDNPN 61
           TTLLTSFVQG  +KV KCGVCGL+GH N+KCP+++E+ N++R+YDPH NTYN+GWRDNPN
Sbjct: 209 TTLLTSFVQGTPLKVTKCGVCGLVGHLNEKCPEVIEDVNIVRRYDPHSNTYNSGWRDNPN 268

Query: 62  LRWGNDAQRPAQATSSSNNQGSNLEDLVKALATNTISFQNEMKQQMSQLTNAISKLEGKG 121
           LRWGND Q+  QA S+S+NQG+NLED++KALATNT+SFQ EMKQQM+QLT AISK++GKG
Sbjct: 269 LRWGNDNQKHTQAPSTSSNQGTNLEDIIKALATNTLSFQQEMKQQMTQLTTAISKMDGKG 328

Query: 122 KLPAQPDHANVSAISLRSGKILETPPS-EEKVPSIPTLLVDENKKKEENLENNASSSSSK 181
           KLPAQ DHANVSAISLRSGKIL+TP + E+KV S P  L  +N+ KEE +E N S S+SK
Sbjct: 329 KLPAQLDHANVSAISLRSGKILDTPTTKEKKVTSKPLPLNSKNESKEEKVETNPSPSNSK 388

Query: 182 AKTS--------------SSR--PKEKKYKLEGKMVIFPKAFKNL 210
              S               SR  PK+K+   E +++ F K   NL
Sbjct: 389 NDKSPLNDFTPYIPKPPFPSRLGPKKKETPKEEELLEFRKVQINL 433

[Close]
BLAST of PI0012320 vs. NCBI nr
Match: XP_008465649.1 (PREDICTED: uncharacterized protein LOC103503291, partial [Cucumis melo])

HSP 1 Score: 255.4 bits (651), Expect = 6.4e-64
Identity = 126/181 (69.61%), Postives = 154/181 (85.08%), Query Frame = 0 

Query: 1   MTTLLTSFVQGGNVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPHGNTYNAGWRDNP 60
           MTTLLTSFVQG  +KV KCGVCGL+G+PNDKCP ++E+ N++R+YDPHGNTYN GWRDNP
Sbjct: 56  MTTLLTSFVQGTALKVTKCGVCGLVGYPNDKCPKVIEDVNIVRRYDPHGNTYNLGWRDNP 115

Query: 61  NLRWGNDAQRPAQATSSSNNQGSNLEDLVKALATNTISFQNEMKQQMSQLTNAISKLEGK 120
           NLRWGND Q+  QA  +S+NQG+NLED++KALATNT+SFQ +MKQQM+QLT  ISK++GK
Sbjct: 116 NLRWGNDNQKHTQAPPTSSNQGTNLEDIIKALATNTLSFQQKMKQQMTQLTTVISKMDGK 175

Query: 121 GKLPAQPDHANVSAISLRSGKILETPPS-EEKVPSIPTLLVDENKKKEENLENNASSSSS 180
           GKLPAQPDH NVSAISLRSGKIL+TP + E+KV S    L  +N+ KEE +E N+SSS+S
Sbjct: 176 GKLPAQPDHVNVSAISLRSGKILDTPTTKEKKVTSKLLPLNSKNQSKEEKVETNSSSSNS 235

[Close]
BLAST of PI0012320 vs. NCBI nr
Match: ADN33993.1 (retrotransposon gag protein [Cucumis melo subsp. melo])

HSP 1 Score: 255.0 bits (650), Expect = 8.3e-64
Identity = 127/181 (70.17%), Postives = 155/181 (85.64%), Query Frame = 0 

Query: 1   MTTLLTSFVQGGNVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPHGNTYNAGWRDNP 60
           MTTLLTSFVQG  +KV KCGVC L+GHPNDKCP+++E+ N++RKYDP+GNTYN+GWRDNP
Sbjct: 57  MTTLLTSFVQGTPLKVTKCGVCRLVGHPNDKCPEVIEDVNIVRKYDPYGNTYNSGWRDNP 116

Query: 61  NLRWGNDAQRPAQATSSSNNQGSNLEDLVKALATNTISFQNEMKQQMSQLTNAISKLEGK 120
           NLRWGND Q+  QA  +S+NQG+NLED++KALATNT+SFQ EMKQQM+QLT AISK++GK
Sbjct: 117 NLRWGNDNQKHTQAPPTSSNQGTNLEDIIKALATNTLSFQQEMKQQMTQLTTAISKMDGK 176

Query: 121 GKLPAQPDHANVSAISLRSGKILETPPS-EEKVPSIPTLLVDENKKKEENLENNASSSSS 180
           GKLPAQPD+ANVSAISLRSGKIL+TP + E+KV S    L  +N+ KEE +E N S S+S
Sbjct: 177 GKLPAQPDYANVSAISLRSGKILDTPTTKEKKVTSKLLPLNSKNESKEEKVETNLSPSNS 236

[Close]
BLAST of PI0012320 vs. NCBI nr
Match: KAA0047407.1 (retrotransposon gag protein [Cucumis melo var. makuwa] >TYK14082.1 retrotransposon gag protein [Cucumis melo var. makuwa])

HSP 1 Score: 252.7 bits (644), Expect = 4.1e-63
Identity = 125/181 (69.06%), Postives = 154/181 (85.08%), Query Frame = 0 

Query: 1   MTTLLTSFVQGGNVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPHGNTYNAGWRDNP 60
           MTTLLTSFVQG  +KV KCGVCGL+GHPNDKCP+++E+ N++RKYDPHGNTYN+GWRDNP
Sbjct: 142 MTTLLTSFVQGTPLKVTKCGVCGLVGHPNDKCPEVIEDVNIVRKYDPHGNTYNSGWRDNP 201

Query: 61  NLRWGNDAQRPAQATSSSNNQGSNLEDLVKALATNTISFQNEMKQQMSQLTNAISKLEGK 120
           NLRWGND Q+  QA S+S+NQG+NLED++KALATNT+SFQ EMKQQM+QLT AISK++GK
Sbjct: 202 NLRWGNDNQKHTQAPSTSSNQGTNLEDIIKALATNTLSFQQEMKQQMTQLTTAISKMDGK 261

Query: 121 GKLPAQPDHANVSAISLRSGKILETPPS-EEKVPSIPTLLVDENKKKEENLENNASSSSS 180
           GKL AQ ++ANVSA+SLRSGKIL+TP + E+K  S P  L  +N+ KEE +E N S  +S
Sbjct: 262 GKLSAQSNYANVSAVSLRSGKILDTPTTKEKKATSKPLPLNTKNECKEEKIETNPSPYNS 321

[Close]
BLAST of PI0012320 vs. NCBI nr
Match: KAA0065554.1 (retrotransposon gag protein [Cucumis melo var. makuwa])

HSP 1 Score: 252.3 bits (643), Expect = 5.4e-63
Identity = 126/181 (69.61%), Postives = 154/181 (85.08%), Query Frame = 0 

Query: 1   MTTLLTSFVQGGNVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPHGNTYNAGWRDNP 60
           MTTLLTSFVQG  +KV KCGVCGL+GHPNDK P+++E+ N++R+YDPHGNTYN+GWRDNP
Sbjct: 33  MTTLLTSFVQGTPLKVTKCGVCGLVGHPNDKYPEVIEDVNIVRRYDPHGNTYNSGWRDNP 92

Query: 61  NLRWGNDAQRPAQATSSSNNQGSNLEDLVKALATNTISFQNEMKQQMSQLTNAISKLEGK 120
            LRWGND Q+  QA S+S+NQG+NLED++KALA NT+SFQ EMKQQM+QLT AISK++GK
Sbjct: 93  KLRWGNDNQKHIQAPSTSSNQGTNLEDIIKALAINTLSFQQEMKQQMTQLTTAISKMDGK 152

Query: 121 GKLPAQPDHANVSAISLRSGKILETPPS-EEKVPSIPTLLVDENKKKEENLENNASSSSS 180
           GKLPAQP+HANVSAISLRSGKIL+TP + E+KV S    L  +N+ KEEN+E N S S+ 
Sbjct: 153 GKLPAQPNHANVSAISLRSGKILDTPTTKEKKVTSKLLPLNSKNESKEENVETNPSPSNI 212

[Close]
BLAST of PI0012320 vs. NCBI nr
Match: XP_016902871.1 (PREDICTED: uncharacterized protein LOC107991910 [Cucumis melo])

HSP 1 Score: 251.1 bits (640), Expect = 1.2e-62
Identity = 125/181 (69.06%), Postives = 151/181 (83.43%), Query Frame = 0 

Query: 1   MTTLLTSFVQGGNVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPHGNTYNAGWRDNP 60
           MT LLTSFVQG  +KV KCGVCGL+GHPNDKCP+++E+ N+++KYDPHGNTYN+GWRDNP
Sbjct: 1   MTILLTSFVQGTPLKVTKCGVCGLVGHPNDKCPEVIEDVNIVQKYDPHGNTYNSGWRDNP 60

Query: 61  NLRWGNDAQRPAQATSSSNNQGSNLEDLVKALATNTISFQNEMKQQMSQLTNAISKLEGK 120
           NLRWGND Q+  QA  +S+NQG+NLED++KALATNT+SFQ EMKQQM+QLT  ISK++GK
Sbjct: 61  NLRWGNDNQKHTQAPPTSSNQGTNLEDIIKALATNTLSFQQEMKQQMTQLTTVISKMDGK 120

Query: 121 GKLPAQPDHANVSAISLRSGKILETPPS-EEKVPSIPTLLVDENKKKEENLENNASSSSS 180
           GKL AQPDHANVS ISLRS KIL+TP + E+KV S P  L  +N+ KEE  E N S S+S
Sbjct: 121 GKLLAQPDHANVSVISLRSDKILDTPTTKEKKVTSKPLPLNSKNESKEEKGETNPSPSNS 180

The following BLAST results are available for this feature:
BLAST of PI0012320 vs.
Match NameE-valueIdentityDescription
BLAST of PI0012320 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A1S3CQU83.1e-6469.61uncharacterized protein LOC103503291 OS=Cucumis melo OX=3656 GN=LOC103503291 PE=... [more]
E5GBZ44.0e-6470.17Retrotransposon gag protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1[more]
A0A5D3CRR82.0e-6369.06Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaf... [more]
A0A5A7VE492.6e-6369.61Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaf... [more]
A0A5A7VQ605.8e-6360.89Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaf... [more]
BLAST of PI0012320 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_008465649.16.4e-6469.61PREDICTED: uncharacterized protein LOC103503291, partial [Cucumis melo][more]
ADN33993.18.3e-6470.17retrotransposon gag protein [Cucumis melo subsp. melo][more]
KAA0047407.14.1e-6369.06retrotransposon gag protein [Cucumis melo var. makuwa] >TYK14082.1 retrotranspos... [more]
KAA0065554.15.4e-6369.61retrotransposon gag protein [Cucumis melo var. makuwa][more]
XP_016902871.11.2e-6269.06PREDICTED: uncharacterized protein LOC107991910 [Cucumis melo][more]
BLAST of PI0012320 vs. NCBI nr
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 100..120
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 161..192
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 53..83
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 66..83

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
PI0012320.1PI0012320.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0015074 DNA integration
molecular_function GO:0003676 nucleic acid binding