PI0011563 (gene) Melon (PI 482460) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below.ATGGCGGAGAAGATGCCTAGATGTAACATCCAGGGTTCGCCGATAATAAAATGTCGGATAAAAAACATGAAGAAAACATTTCAGGCCATTGCAAAAATGTGCGGGCCTTCGTGTAGTTGGTTCAGCTGGAACGATGAAGTGGAGTACATCATCACTGAGAAGAAGTTGTTCGACAATTGGGTGAAAGTGAGTTATTCATTATGAAATTAATAAAATTCGTTTATAATAAAAAAAAACTGACAATTTATTTAAACCCTTCAACAGAGTCATCCTGCTGCCAAGGGCTTCCTAAACAAGCCATTTCTCCATTACGATAACATGTGCTATGTATTTGGGAAAGATCGTGCGACGAGAGCTCGCACGGAGATATTCACCGATGTACTGTCGAATGTGCCTAGAGGGTTCAAGGGATTTCCCGCTGATTATGGAAACGATACGGAGATCCCTATGATGTACAGTCAGGGACTGGACATGTCACCTGATGACATCGCGGGCACACGACTCGGTCACTCGAGTGAGGGTAGGATTGGTTCAAGTGGATCGAAGAGGAAGCGGAGACGCTAG ATGGCGGAGAAGATGCCTAGATGTAACATCCAGGGTTCGCCGATAATAAAATGTCGGATAAAAAACATGAAGAAAACATTTCAGGCCATTGCAAAAATGTGCGGGCCTTCGTGTAGTTGGTTCAGCTGGAACGATGAAGTGGAGTACATCATCACTGAGAAGAAGTTGTTCGACAATTGGGTGAAAAGTCATCCTGCTGCCAAGGGCTTCCTAAACAAGCCATTTCTCCATTACGATAACATGTGCTATGTATTTGGGAAAGATCGTGCGACGAGAGCTCGCACGGAGATATTCACCGATGTACTGTCGAATGTGCCTAGAGGGTTCAAGGGATTTCCCGCTGATTATGGAAACGATACGGAGATCCCTATGATGTACAGTCAGGGACTGGACATGTCACCTGATGACATCGCGGGCACACGACTCGGTCACTCGAGTGAGGGTAGGATTGGTTCAAGTGGATCGAAGAGGAAGCGGAGACGCTAG ATGGCGGAGAAGATGCCTAGATGTAACATCCAGGGTTCGCCGATAATAAAATGTCGGATAAAAAACATGAAGAAAACATTTCAGGCCATTGCAAAAATGTGCGGGCCTTCGTGTAGTTGGTTCAGCTGGAACGATGAAGTGGAGTACATCATCACTGAGAAGAAGTTGTTCGACAATTGGGTGAAAAGTCATCCTGCTGCCAAGGGCTTCCTAAACAAGCCATTTCTCCATTACGATAACATGTGCTATGTATTTGGGAAAGATCGTGCGACGAGAGCTCGCACGGAGATATTCACCGATGTACTGTCGAATGTGCCTAGAGGGTTCAAGGGATTTCCCGCTGATTATGGAAACGATACGGAGATCCCTATGATGTACAGTCAGGGACTGGACATGTCACCTGATGACATCGCGGGCACACGACTCGGTCACTCGAGTGAGGGTAGGATTGGTTCAAGTGGATCGAAGAGGAAGCGGAGACGCTAG MAEKMPRCNIQGSPIIKCRIKNMKKTFQAIAKMCGPSCSWFSWNDEVEYIITEKKLFDNWVKSHPAAKGFLNKPFLHYDNMCYVFGKDRATRARTEIFTDVLSNVPRGFKGFPADYGNDTEIPMMYSQGLDMSPDDIAGTRLGHSSEGRIGSSGSKRKRRR Homology
BLAST of PI0011563 vs. ExPASy TrEMBL
Match: A0A5D3D2M5 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold306G003170 PE=4 SV=1) HSP 1 Score: 200.7 bits (509), Expect = 4.7e-48 Identity = 96/160 (60.00%), Postives = 121/160 (75.62%), Query Frame = 0
BLAST of PI0011563 vs. ExPASy TrEMBL
Match: A0A5A7VCA3 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold82G001180 PE=4 SV=1) HSP 1 Score: 196.8 bits (499), Expect = 6.8e-47 Identity = 94/160 (58.75%), Postives = 119/160 (74.38%), Query Frame = 0
BLAST of PI0011563 vs. ExPASy TrEMBL
Match: A0A5A7TGP1 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold246G00540 PE=4 SV=1) HSP 1 Score: 194.1 bits (492), Expect = 4.4e-46 Identity = 93/160 (58.13%), Postives = 118/160 (73.75%), Query Frame = 0
BLAST of PI0011563 vs. ExPASy TrEMBL
Match: A0A5D3DBP2 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold328G00100 PE=4 SV=1) HSP 1 Score: 193.4 bits (490), Expect = 7.5e-46 Identity = 93/160 (58.13%), Postives = 118/160 (73.75%), Query Frame = 0
BLAST of PI0011563 vs. ExPASy TrEMBL
Match: A0A5A7VES2 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold21G002250 PE=4 SV=1) HSP 1 Score: 193.4 bits (490), Expect = 7.5e-46 Identity = 94/160 (58.75%), Postives = 118/160 (73.75%), Query Frame = 0
BLAST of PI0011563 vs. NCBI nr
Match: KAA0042063.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYK18005.1 retrotransposon protein [Cucumis melo var. makuwa]) HSP 1 Score: 200.7 bits (509), Expect = 9.8e-48 Identity = 96/160 (60.00%), Postives = 121/160 (75.62%), Query Frame = 0
BLAST of PI0011563 vs. NCBI nr
Match: KAA0064810.1 (retrotransposon protein [Cucumis melo var. makuwa]) HSP 1 Score: 196.8 bits (499), Expect = 1.4e-46 Identity = 94/160 (58.75%), Postives = 119/160 (74.38%), Query Frame = 0
BLAST of PI0011563 vs. NCBI nr
Match: KAA0042500.1 (retrotransposon protein [Cucumis melo var. makuwa]) HSP 1 Score: 194.1 bits (492), Expect = 9.1e-46 Identity = 93/160 (58.13%), Postives = 118/160 (73.75%), Query Frame = 0
BLAST of PI0011563 vs. NCBI nr
Match: KAA0066208.1 (retrotransposon protein [Cucumis melo var. makuwa]) HSP 1 Score: 193.4 bits (490), Expect = 1.6e-45 Identity = 94/160 (58.75%), Postives = 118/160 (73.75%), Query Frame = 0
BLAST of PI0011563 vs. NCBI nr
Match: TYK20986.1 (retrotransposon protein [Cucumis melo var. makuwa]) HSP 1 Score: 193.4 bits (490), Expect = 1.6e-45 Identity = 93/160 (58.13%), Postives = 118/160 (73.75%), Query Frame = 0
BLAST of PI0011563 vs. TAIR 10
Match: AT2G24960.2 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G02210.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). ) HSP 1 Score: 50.1 bits (118), Expect = 2.0e-06 Identity = 19/83 (22.89%), Postives = 47/83 (56.63%), Query Frame = 0
BLAST of PI0011563 vs. TAIR 10
Match: AT4G02210.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G24960.2); Has 791 Blast hits to 465 proteins in 19 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 17; Plants - 748; Viruses - 0; Other Eukaryotes - 26 (source: NCBI BLink). ) HSP 1 Score: 47.0 bits (110), Expect = 1.7e-05 Identity = 17/72 (23.61%), Postives = 43/72 (59.72%), Query Frame = 0
BLAST of PI0011563 vs. TAIR 10
Match: AT4G02210.2 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G24960.2). ) HSP 1 Score: 47.0 bits (110), Expect = 1.7e-05 Identity = 17/72 (23.61%), Postives = 43/72 (59.72%), Query Frame = 0
BLAST of PI0011563 vs. TAIR 10
Match: AT2G24960.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G02210.2); Has 1453 Blast hits to 509 proteins in 26 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 39; Plants - 1363; Viruses - 0; Other Eukaryotes - 50 (source: NCBI BLink). ) HSP 1 Score: 43.9 bits (102), Expect = 1.4e-04 Identity = 18/72 (25.00%), Postives = 39/72 (54.17%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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