PI0010756 (gene) Melon (PI 482460) v1

Overview


Name	PI0010756
Type	gene
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	Reverse transcriptase
Location	chr03: 9827419 .. 9827760 (-)
RNA-Seq Expression	PI0010756
Synteny	PI0010756

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTCCAGCAGAGTTGAAGGAATTGAAGTTCCAGTTGCAAGAGTTGTTGGATAAGGGTTTCATCCGACCGAGCGTGTCTCCCTGGGGAGTGCCGGTGTTGTTTGTGAAGAAGAAGGATGGGTCCATGCGTTTGTGCATCGATTACCGTGAGTTAAACAAGGTAACTATAAAGAATAAGTATCCTCTTACCAGGATTAATGACTTGTTTGATCAGCTTCAGGGAGCTACGGTGTTCTCTAAGATCGACCTACGATCGGGATATCACCAGCTCCGGATTAAGGAAGAAGACATACCGAAGACACTTTTCGTTCGAGGTATGGTCACTATGAGTTCATCGTGA

mRNA sequence

ATGGCTCCAGCAGAGTTGAAGGAATTGAAGTTCCAGTTGCAAGAGTTGTTGGATAAGGGTTTCATCCGACCGAGCGTGTCTCCCTGGGGAGTGCCGGTGTTGTTTGTGAAGAAGAAGGATGGGTCCATGCGTTTGTGCATCGATTACCGTGAGTTAAACAAGGTAACTATAAAGAATAAGTATCCTCTTACCAGGATTAATGACTTGTTTGATCAGCTTCAGGGAGCTACGGTGTTCTCTAAGATCGACCTACGATCGGGATATCACCAGCTCCGGATTAAGGAAGAAGACATACCGAAGACACTTTTCGTTCGAGGTATGGTCACTATGAGTTCATCGTGA

Coding sequence (CDS)

ATGGCTCCAGCAGAGTTGAAGGAATTGAAGTTCCAGTTGCAAGAGTTGTTGGATAAGGGTTTCATCCGACCGAGCGTGTCTCCCTGGGGAGTGCCGGTGTTGTTTGTGAAGAAGAAGGATGGGTCCATGCGTTTGTGCATCGATTACCGTGAGTTAAACAAGGTAACTATAAAGAATAAGTATCCTCTTACCAGGATTAATGACTTGTTTGATCAGCTTCAGGGAGCTACGGTGTTCTCTAAGATCGACCTACGATCGGGATATCACCAGCTCCGGATTAAGGAAGAAGACATACCGAAGACACTTTTCGTTCGAGGTATGGTCACTATGAGTTCATCGTGA

Protein sequence

MAPAELKELKFQLQELLDKGFIRPSVSPWGVPVLFVKKKDGSMRLCIDYRELNKVTIKNKYPLTRINDLFDQLQGATVFSKIDLRSGYHQLRIKEEDIPKTLFVRGMVTMSSS

Homology

[Close]

BLAST of PI0010756 vs. ExPASy Swiss-Prot
Match: Q99315 (Transposon Ty3-G Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY3B-G PE=1 SV=3)

HSP 1 Score: 104.0 bits (258), Expect = 1.1e-21
Identity = 48/98 (48.98%), Postives = 68/98 (69.39%), Query Frame = 0


Query: 7   KELKFQLQELLDKGFIRPSVSPWGVPVLFVKKKDGSMRLCIDYRELNKVTIKNKYPLTRI 66
           +E+   +Q+LLD  FI PS SP   PV+ V KKDG+ RLC+DYR LNK TI + +PL RI
Sbjct: 610 QEINKIVQKLLDNKFIVPSKSPCSSPVVLVPKKDGTFRLCVDYRTLNKATISDPFPLPRI 669

Query: 67  NDLFDQLQGATVFSKIDLRSGYHQLRIKEEDIPKTLFV 105
           ++L  ++  A +F+ +DL SGYHQ+ ++ +D  KT FV
Sbjct: 670 DNLLSRIGNAQIFTTLDLHSGYHQIPMEPKDRYKTAFV 707

[Close]

BLAST of PI0010756 vs. ExPASy Swiss-Prot
Match: Q7LHG5 (Transposon Ty3-I Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY3B-I PE=1 SV=2)

HSP 1 Score: 104.0 bits (258), Expect = 1.1e-21
Identity = 48/98 (48.98%), Postives = 68/98 (69.39%), Query Frame = 0


Query: 7   KELKFQLQELLDKGFIRPSVSPWGVPVLFVKKKDGSMRLCIDYRELNKVTIKNKYPLTRI 66
           +E+   +Q+LLD  FI PS SP   PV+ V KKDG+ RLC+DYR LNK TI + +PL RI
Sbjct: 636 QEINKIVQKLLDNKFIVPSKSPCSSPVVLVPKKDGTFRLCVDYRTLNKATISDPFPLPRI 695

Query: 67  NDLFDQLQGATVFSKIDLRSGYHQLRIKEEDIPKTLFV 105
           ++L  ++  A +F+ +DL SGYHQ+ ++ +D  KT FV
Sbjct: 696 DNLLSRIGNAQIFTTLDLHSGYHQIPMEPKDRYKTAFV 733

[Close]

BLAST of PI0010756 vs. ExPASy Swiss-Prot
Match: Q8I7P9 (Retrovirus-related Pol polyprotein from transposon opus OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 90.1 bits (222), Expect = 1.7e-17
Identity = 44/101 (43.56%), Postives = 61/101 (60.40%), Query Frame = 0


Query: 8   ELKFQLQELLDKGFIRPSVSPWGVPVLFVKKK-----DGSMRLCIDYRELNKVTIKNKYP 67
           E++ Q+ ELL  G IRPS SP+  P+  V KK     +   R+ +D++ LN VTI + YP
Sbjct: 138 EVERQIDELLQDGIIRPSNSPYNSPIWIVPKKPKPNGEKQYRMVVDFKRLNTVTIPDTYP 197

Query: 68  LTRINDLFDQLQGATVFSKIDLRSGYHQLRIKEEDIPKTLF 104
           +  IN     L  A  F+ +DL SG+HQ+ +KE DIPKT F
Sbjct: 198 IPDINATLASLGNAKYFTTLDLTSGFHQIHMKESDIPKTAF 238

[Close]

BLAST of PI0010756 vs. ExPASy Swiss-Prot
Match: Q9UR07 (Transposon Tf2-11 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-11 PE=3 SV=1)

HSP 1 Score: 89.7 bits (221), Expect = 2.2e-17
Identity = 39/103 (37.86%), Postives = 66/103 (64.08%), Query Frame = 0


Query: 1   MAPAELKELKFQLQELLDKGFIRPSVSPWGVPVLFVKKKDGSMRLCIDYRELNKVTIKNK 60
           + P +++ +  ++ + L  G IR S +    PV+FV KK+G++R+ +DY+ LNK    N 
Sbjct: 420 LPPGKMQAMNDEINQGLKSGIIRESKAINACPVMFVPKKEGTLRMVVDYKPLNKYVKPNI 479

Query: 61  YPLTRINDLFDQLQGATVFSKIDLRSGYHQLRIKEEDIPKTLF 104
           YPL  I  L  ++QG+T+F+K+DL+S YH +R+++ D  K  F
Sbjct: 480 YPLPLIEQLLAKIQGSTIFTKLDLKSAYHLIRVRKGDEHKLAF 522

[Close]

BLAST of PI0010756 vs. ExPASy Swiss-Prot
Match: P0CT41 (Transposon Tf2-12 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-12 PE=3 SV=1)

HSP 1 Score: 89.7 bits (221), Expect = 2.2e-17
Identity = 39/103 (37.86%), Postives = 66/103 (64.08%), Query Frame = 0


Query: 1   MAPAELKELKFQLQELLDKGFIRPSVSPWGVPVLFVKKKDGSMRLCIDYRELNKVTIKNK 60
           + P +++ +  ++ + L  G IR S +    PV+FV KK+G++R+ +DY+ LNK    N 
Sbjct: 420 LPPGKMQAMNDEINQGLKSGIIRESKAINACPVMFVPKKEGTLRMVVDYKPLNKYVKPNI 479

Query: 61  YPLTRINDLFDQLQGATVFSKIDLRSGYHQLRIKEEDIPKTLF 104
           YPL  I  L  ++QG+T+F+K+DL+S YH +R+++ D  K  F
Sbjct: 480 YPLPLIEQLLAKIQGSTIFTKLDLKSAYHLIRVRKGDEHKLAF 522

[Close]

BLAST of PI0010756 vs. ExPASy TrEMBL
Match: A0A5D3B9A7 (Retrotransposon protein, putative, Ty3-gypsy sub-class OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold546G00860 PE=4 SV=1)

HSP 1 Score: 203.0 bits (515), Expect = 6.7e-49
Identity = 97/112 (86.61%), Postives = 103/112 (91.96%), Query Frame = 0


Query: 1   MAPAELKELKFQLQELLDKGFIRPSVSPWGVPVLFVKKKDGSMRLCIDYRELNKVTIKNK 60
           MAPAELKELK QLQELLDKGFIRPSVSPWG PVLFVKKKDGSMRLCIDYRELNKVT+KNK
Sbjct: 496 MAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNK 555

Query: 61  YPLTRINDLFDQLQGATVFSKIDLRSGYHQLRIKEEDIPKTLFVRGMVTMSS 113
           YPL RI+DLFDQLQGATVF KIDLRSGYHQLRIK+ D+PKT+FV  M TM +
Sbjct: 556 YPLPRIDDLFDQLQGATVFFKIDLRSGYHQLRIKDSDVPKTVFVLDMDTMKA 607

[Close]

BLAST of PI0010756 vs. ExPASy TrEMBL
Match: A0A5A7T8G8 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold36G00730 PE=4 SV=1)

HSP 1 Score: 201.1 bits (510), Expect = 2.5e-48
Identity = 95/103 (92.23%), Postives = 99/103 (96.12%), Query Frame = 0


Query: 1   MAPAELKELKFQLQELLDKGFIRPSVSPWGVPVLFVKKKDGSMRLCIDYRELNKVTIKNK 60
           MAPAELKELK QLQELLDKGFIRPSVSPWG PVLFVKKKDGSMRLCIDYRELNKVT+KNK
Sbjct: 353 MAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNK 412

Query: 61  YPLTRINDLFDQLQGATVFSKIDLRSGYHQLRIKEEDIPKTLF 104
           YPL RI+DLFDQLQGATVFSKIDLRSGYHQLRIK+ED+PKT F
Sbjct: 413 YPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDEDVPKTAF 455

[Close]

BLAST of PI0010756 vs. ExPASy TrEMBL
Match: A0A6J1EV26 (Reverse transcriptase OS=Cucurbita moschata OX=3662 GN=LOC111437896 PE=4 SV=1)

HSP 1 Score: 200.3 bits (508), Expect = 4.3e-48
Identity = 95/103 (92.23%), Postives = 99/103 (96.12%), Query Frame = 0


Query: 1   MAPAELKELKFQLQELLDKGFIRPSVSPWGVPVLFVKKKDGSMRLCIDYRELNKVTIKNK 60
           MAPAELKELK QLQELLDKGFIRPSVSPWG PVLFVKKKDG+MRLCIDYRELNKVTIKNK
Sbjct: 616 MAPAELKELKIQLQELLDKGFIRPSVSPWGAPVLFVKKKDGTMRLCIDYRELNKVTIKNK 675

Query: 61  YPLTRINDLFDQLQGATVFSKIDLRSGYHQLRIKEEDIPKTLF 104
           YPL RI+DLFDQLQGATVFSKIDLRSGYHQ+RI+EEDIPKT F
Sbjct: 676 YPLPRIDDLFDQLQGATVFSKIDLRSGYHQMRIREEDIPKTAF 718

[Close]

BLAST of PI0010756 vs. ExPASy TrEMBL
Match: A0A5A7VIT9 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold21G003090 PE=4 SV=1)

HSP 1 Score: 199.9 bits (507), Expect = 5.7e-48
Identity = 94/103 (91.26%), Postives = 99/103 (96.12%), Query Frame = 0


Query: 1   MAPAELKELKFQLQELLDKGFIRPSVSPWGVPVLFVKKKDGSMRLCIDYRELNKVTIKNK 60
           MAPAELKELK QLQELLDKGFIRPSVSPWG PVLFVKKKDGSMRLCIDYRELNKVT+KN+
Sbjct: 154 MAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNR 213

Query: 61  YPLTRINDLFDQLQGATVFSKIDLRSGYHQLRIKEEDIPKTLF 104
           YPL RI+DLFDQLQGATVFSKIDLRSGYHQLRIK+ED+PKT F
Sbjct: 214 YPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDEDVPKTAF 256

[Close]

BLAST of PI0010756 vs. ExPASy TrEMBL
Match: A0A5A7VGW8 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold485G00940 PE=4 SV=1)

HSP 1 Score: 199.9 bits (507), Expect = 5.7e-48
Identity = 94/103 (91.26%), Postives = 99/103 (96.12%), Query Frame = 0


Query: 1   MAPAELKELKFQLQELLDKGFIRPSVSPWGVPVLFVKKKDGSMRLCIDYRELNKVTIKNK 60
           MAPAELKELK QLQELLDKGFIRPSVSPWG PVLFVKKKDGSMRLCIDYRELNKVT+KN+
Sbjct: 396 MAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNR 455

Query: 61  YPLTRINDLFDQLQGATVFSKIDLRSGYHQLRIKEEDIPKTLF 104
           YPL RI+DLFDQLQGATVFSKIDLRSGYHQLRIK+ED+PKT F
Sbjct: 456 YPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDEDVPKTAF 498

[Close]

BLAST of PI0010756 vs. NCBI nr
Match: TYJ96450.1 (retrotransposon protein, putative, Ty3-gypsy sub-class [Cucumis melo var. makuwa])

HSP 1 Score: 203.0 bits (515), Expect = 1.4e-48
Identity = 97/112 (86.61%), Postives = 103/112 (91.96%), Query Frame = 0


Query: 1   MAPAELKELKFQLQELLDKGFIRPSVSPWGVPVLFVKKKDGSMRLCIDYRELNKVTIKNK 60
           MAPAELKELK QLQELLDKGFIRPSVSPWG PVLFVKKKDGSMRLCIDYRELNKVT+KNK
Sbjct: 496 MAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNK 555

Query: 61  YPLTRINDLFDQLQGATVFSKIDLRSGYHQLRIKEEDIPKTLFVRGMVTMSS 113
           YPL RI+DLFDQLQGATVF KIDLRSGYHQLRIK+ D+PKT+FV  M TM +
Sbjct: 556 YPLPRIDDLFDQLQGATVFFKIDLRSGYHQLRIKDSDVPKTVFVLDMDTMKA 607

[Close]

BLAST of PI0010756 vs. NCBI nr
Match: KAA0037901.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 201.1 bits (510), Expect = 5.2e-48
Identity = 95/103 (92.23%), Postives = 99/103 (96.12%), Query Frame = 0


Query: 1   MAPAELKELKFQLQELLDKGFIRPSVSPWGVPVLFVKKKDGSMRLCIDYRELNKVTIKNK 60
           MAPAELKELK QLQELLDKGFIRPSVSPWG PVLFVKKKDGSMRLCIDYRELNKVT+KNK
Sbjct: 353 MAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNK 412

Query: 61  YPLTRINDLFDQLQGATVFSKIDLRSGYHQLRIKEEDIPKTLF 104
           YPL RI+DLFDQLQGATVFSKIDLRSGYHQLRIK+ED+PKT F
Sbjct: 413 YPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDEDVPKTAF 455

[Close]

BLAST of PI0010756 vs. NCBI nr
Match: XP_022931734.1 (uncharacterized protein LOC111437896 [Cucurbita moschata])

HSP 1 Score: 200.3 bits (508), Expect = 8.9e-48
Identity = 95/103 (92.23%), Postives = 99/103 (96.12%), Query Frame = 0


Query: 1   MAPAELKELKFQLQELLDKGFIRPSVSPWGVPVLFVKKKDGSMRLCIDYRELNKVTIKNK 60
           MAPAELKELK QLQELLDKGFIRPSVSPWG PVLFVKKKDG+MRLCIDYRELNKVTIKNK
Sbjct: 616 MAPAELKELKIQLQELLDKGFIRPSVSPWGAPVLFVKKKDGTMRLCIDYRELNKVTIKNK 675

Query: 61  YPLTRINDLFDQLQGATVFSKIDLRSGYHQLRIKEEDIPKTLF 104
           YPL RI+DLFDQLQGATVFSKIDLRSGYHQ+RI+EEDIPKT F
Sbjct: 676 YPLPRIDDLFDQLQGATVFSKIDLRSGYHQMRIREEDIPKTAF 718

[Close]

BLAST of PI0010756 vs. NCBI nr
Match: KAA0036671.1 (gag protease polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 199.9 bits (507), Expect = 1.2e-47
Identity = 94/103 (91.26%), Postives = 99/103 (96.12%), Query Frame = 0


Query: 1   MAPAELKELKFQLQELLDKGFIRPSVSPWGVPVLFVKKKDGSMRLCIDYRELNKVTIKNK 60
           MAPAELKELK QLQELLDKGFIRPSVSPWG PVLFVKKKDGSMRLCIDYRELNKVT+KN+
Sbjct: 833 MAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNR 892

Query: 61  YPLTRINDLFDQLQGATVFSKIDLRSGYHQLRIKEEDIPKTLF 104
           YPL RI+DLFDQLQGATVFSKIDLRSGYHQLRIK+ED+PKT F
Sbjct: 893 YPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDEDVPKTAF 935

[Close]

BLAST of PI0010756 vs. NCBI nr
Match: KAA0040699.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 199.9 bits (507), Expect = 1.2e-47
Identity = 94/103 (91.26%), Postives = 99/103 (96.12%), Query Frame = 0


Query: 1   MAPAELKELKFQLQELLDKGFIRPSVSPWGVPVLFVKKKDGSMRLCIDYRELNKVTIKNK 60
           MAPAELKELK QLQELLDKGFIRPSVSPWG PVLFVKKKDGSMRLCIDYRELNKVT+KN+
Sbjct: 731 MAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNR 790

Query: 61  YPLTRINDLFDQLQGATVFSKIDLRSGYHQLRIKEEDIPKTLF 104
           YPL RI+DLFDQLQGATVFSKIDLRSGYHQLRIK+ED+PKT F
Sbjct: 791 YPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDEDVPKTAF 833

The following BLAST results are available for this feature:

BLAST of PI0010756 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q99315	1.1e-21	48.98	Transposon Ty3-G Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 20...	[more]
Q7LHG5	1.1e-21	48.98	Transposon Ty3-I Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 20...	[more]
Q8I7P9	1.7e-17	43.56	Retrovirus-related Pol polyprotein from transposon opus OS=Drosophila melanogast...	[more]
Q9UR07	2.2e-17	37.86	Transposon Tf2-11 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24...	[more]
P0CT41	2.2e-17	37.86	Transposon Tf2-12 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24...	[more]

BLAST of PI0010756 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3B9A7	6.7e-49	86.61	Retrotransposon protein, putative, Ty3-gypsy sub-class OS=Cucumis melo var. maku...	[more]
A0A5A7T8G8	2.5e-48	92.23	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold36...	[more]
A0A6J1EV26	4.3e-48	92.23	Reverse transcriptase OS=Cucurbita moschata OX=3662 GN=LOC111437896 PE=4 SV=1	[more]
A0A5A7VIT9	5.7e-48	91.26	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold21...	[more]
A0A5A7VGW8	5.7e-48	91.26	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold48...	[more]

BLAST of PI0010756 vs. NCBI nr


Match Name	E-value	Identity	Description
TYJ96450.1	1.4e-48	86.61	retrotransposon protein, putative, Ty3-gypsy sub-class [Cucumis melo var. makuwa...	[more]
KAA0037901.1	5.2e-48	92.23	pol protein [Cucumis melo var. makuwa]	[more]
XP_022931734.1	8.9e-48	92.23	uncharacterized protein LOC111437896 [Cucurbita moschata]	[more]
KAA0036671.1	1.2e-47	91.26	gag protease polyprotein [Cucumis melo var. makuwa]	[more]
KAA0040699.1	1.2e-47	91.26	pol protein [Cucumis melo var. makuwa]	[more]

BLAST of PI0010756 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	3.10.10.10	HIV Type 1 Reverse Transcriptase, subunit A, domain 1	coord: 1..104 e-value: 1.1E-44 score: 154.3
None	No IPR available	PANTHER	PTHR15503:SF11	RETROTRANSPOSON GAG-LIKE PROTEIN 6	coord: 4..103
None	No IPR available	CDD	cd01647	RT_LTR	coord: 20..104 e-value: 2.72672E-43 score: 137.727
IPR000477	Reverse transcriptase domain	PFAM	PF00078	RVT_1	coord: 36..103 e-value: 1.5E-7 score: 31.2
IPR043128	Reverse transcriptase/Diguanylate cyclase domain	GENE3D	3.30.70.270		coord: 61..88 e-value: 1.1E-44 score: 154.3
IPR032567	LDOC1-related	PANTHER	PTHR15503	LDOC1 RELATED	coord: 4..103
IPR043502	DNA/RNA polymerase superfamily	SUPERFAMILY	56672	DNA/RNA polymerases	coord: 2..106

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
PI0010756.1	PI0010756.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
biological_process	GO:0090305	nucleic acid phosphodiester bond hydrolysis
biological_process	GO:0006508	proteolysis
biological_process	GO:0006355	regulation of transcription, DNA-templated
biological_process	GO:0006278	RNA-dependent DNA biosynthetic process
molecular_function	GO:0004190	aspartic-type endopeptidase activity
molecular_function	GO:0003700	DNA-binding transcription factor activity
molecular_function	GO:0004519	endonuclease activity
molecular_function	GO:0003964	RNA-directed DNA polymerase activity
molecular_function	GO:0043565	sequence-specific DNA binding
molecular_function	GO:0008270	zinc ion binding