PI0009330 (gene) Melon (PI 482460) v1

Overview


Name	PI0009330
Type	gene
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	Retrotransposon protein
Location	chr05: 7308163 .. 7308510 (+)
RNA-Seq Expression	PI0009330
Synteny	PI0009330

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATGTACAGTCAGGGACTGGATATGTCATCTGATGACATCGCGAGCACACGACTCGATCGATCGAGTGAGGGTAGGACTGGTTCAAGCGGATCGAAGAGAAAGCGGGGAAGCCAGGCGGTAGAGAGTATGGAAATCATTCGAACTGCAATGGACTTCGCTAATGACCAGTTGAAGGCCATTGTAGAGTGGTCGAATTTACAACGTCAAGATAAACGCGCCACTTATGCAAAAGTCATGCCAGTTGTAGGGGATCCCAGAATTGAGTACCCGAGACAGGGTACGCCTTATAAGGATACTGATGTGCAATGTGAACAACATGAAAGCATTCTTGGAGGTACCCGATGA

mRNA sequence

ATGATGTACAGTCAGGGACTGGATATGTCATCTGATGACATCGCGAGCACACGACTCGATCGATCGAGTGAGGGTAGGACTGGTTCAAGCGGATCGAAGAGAAAGCGGGGAAGCCAGGCGGTAGAGAGTATGGAAATCATTCGAACTGCAATGGACTTCGCTAATGACCAGTTGAAGGCCATTGTAGAGTGGTCGAATTTACAACGTCAAGATAAACGCGCCACTTATGCAAAAGTCATGCCAGTTGTAGGGGATCCCAGAATTGAGTACCCGAGACAGGGTACGCCTTATAAGGATACTGATGTGCAATGTGAACAACATGAAAGCATTCTTGGAGGTACCCGATGA

Coding sequence (CDS)

ATGATGTACAGTCAGGGACTGGATATGTCATCTGATGACATCGCGAGCACACGACTCGATCGATCGAGTGAGGGTAGGACTGGTTCAAGCGGATCGAAGAGAAAGCGGGGAAGCCAGGCGGTAGAGAGTATGGAAATCATTCGAACTGCAATGGACTTCGCTAATGACCAGTTGAAGGCCATTGTAGAGTGGTCGAATTTACAACGTCAAGATAAACGCGCCACTTATGCAAAAGTCATGCCAGTTGTAGGGGATCCCAGAATTGAGTACCCGAGACAGGGTACGCCTTATAAGGATACTGATGTGCAATGTGAACAACATGAAAGCATTCTTGGAGGTACCCGATGA

Protein sequence

MMYSQGLDMSSDDIASTRLDRSSEGRTGSSGSKRKRGSQAVESMEIIRTAMDFANDQLKAIVEWSNLQRQDKRATYAKVMPVVGDPRIEYPRQGTPYKDTDVQCEQHESILGGTR

Homology

[Close]

BLAST of PI0009330 vs. ExPASy TrEMBL
Match: A0A5A7V469 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold420G00340 PE=4 SV=1)

HSP 1 Score: 108.2 bits (269), Expect = 2.3e-20
Identity = 56/80 (70.00%), Postives = 66/80 (82.50%), Query Frame = 0


Query: 1   MMYSQGLDMSSDDIASTRLDRSSEGRTGSSGSKRKRGSQAVESMEIIRTAMDFANDQLKA 60
           MMYSQG+DM SDDI  TR DRS+EGRTGSSGSKRK+G QAVE+MEIIR  M+ +ND+LKA
Sbjct: 34  MMYSQGIDMLSDDIMGTRPDRSTEGRTGSSGSKRKQGGQAVETMEIIRNVMEHSNDRLKA 93

Query: 61  IVEWSNLQRQDKRATYAKVM 81
           IVEW N+QRQD  A   +V+
Sbjct: 94  IVEWLNVQRQDASARLVEVV 113

[Close]

BLAST of PI0009330 vs. ExPASy TrEMBL
Match: A0A5D3CAJ4 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold648G001830 PE=4 SV=1)

HSP 1 Score: 91.3 bits (225), Expect = 2.9e-15
Identity = 46/78 (58.97%), Postives = 62/78 (79.49%), Query Frame = 0


Query: 2   MYSQGLDMSSDDIASTRLDRSSEGRTGSSGSKRKRGSQAVESMEIIRTAMDFANDQLKAI 61
           MYSQGLDMSSDDI  T+ +R+S+GR  S+GSKRK+GSQ VE+ +IIR+AM++AN+ L  I
Sbjct: 199 MYSQGLDMSSDDIMGTQPERASDGRNASNGSKRKQGSQPVETTKIIRSAMEYANNHLNHI 258

Query: 62  VEWSNLQRQDKRATYAKV 80
            +WS +QRQD   T+ +V
Sbjct: 259 ADWSIIQRQDASVTWQEV 276

[Close]

BLAST of PI0009330 vs. ExPASy TrEMBL
Match: A0A5A7U0G0 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold115G002300 PE=4 SV=1)

HSP 1 Score: 91.3 bits (225), Expect = 2.9e-15
Identity = 46/78 (58.97%), Postives = 62/78 (79.49%), Query Frame = 0


Query: 2   MYSQGLDMSSDDIASTRLDRSSEGRTGSSGSKRKRGSQAVESMEIIRTAMDFANDQLKAI 61
           MYSQGLDMSSDDI  T+ +R+S+GR  S+GSKRK+GSQ VE+ +IIR+AM++AN+ L  I
Sbjct: 152 MYSQGLDMSSDDIMGTQPERASDGRNASNGSKRKQGSQPVETTKIIRSAMEYANNHLNHI 211

Query: 62  VEWSNLQRQDKRATYAKV 80
            +WS +QRQD   T+ +V
Sbjct: 212 ADWSIIQRQDASVTWQEV 229

[Close]

BLAST of PI0009330 vs. ExPASy TrEMBL
Match: A0A5A7V3C0 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold318G001020 PE=4 SV=1)

HSP 1 Score: 88.2 bits (217), Expect = 2.4e-14
Identity = 47/75 (62.67%), Postives = 55/75 (73.33%), Query Frame = 0


Query: 5   QGLDMSSDDIASTRLDRSSEGRTGSSGSKRKRGSQAVESMEIIRTAMDFANDQLKAIVEW 64
           QGLDM  DDI  TR  RSSE RTGSSGSKRK+G Q VES+EIIR+AM++ N QLKAI EW
Sbjct: 44  QGLDMLPDDIMGTRPSRSSEDRTGSSGSKRKQGGQMVESVEIIRSAMEYVNGQLKAIAEW 103

Query: 65  SNLQRQDKRATYAKV 80
           SN+   D   ++  V
Sbjct: 104 SNMPNVDDMKSFLDV 118

[Close]

BLAST of PI0009330 vs. ExPASy TrEMBL
Match: A0A5A7SXX8 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold862G00320 PE=3 SV=1)

HSP 1 Score: 84.3 bits (207), Expect = 3.5e-13
Identity = 45/85 (52.94%), Postives = 59/85 (69.41%), Query Frame = 0


Query: 2   MYSQGLDMSSDDIASTRLDRSSEGRTGSSGSKRKRGSQAVESMEIIRTAMDFANDQLKAI 61
           MYSQGL+MS D++   R  + SEGR  SSGSKRKR  QA +S +++RTA+++ N+QL  I
Sbjct: 256 MYSQGLNMSPDELMGIRNAQVSEGRYVSSGSKRKRKGQATDSGDVLRTAIEYGNEQLNCI 315

Query: 62  VEWSNLQRQDKRATYAKVMPVVGDP 87
            EW  LQRQD   T  +V+PV G P
Sbjct: 316 AEWPILQRQDASQTRQEVVPVGGHP 340

[Close]

BLAST of PI0009330 vs. NCBI nr
Match: KAA0060529.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYK00769.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 108.2 bits (269), Expect = 4.7e-20
Identity = 56/80 (70.00%), Postives = 66/80 (82.50%), Query Frame = 0


Query: 1   MMYSQGLDMSSDDIASTRLDRSSEGRTGSSGSKRKRGSQAVESMEIIRTAMDFANDQLKA 60
           MMYSQG+DM SDDI  TR DRS+EGRTGSSGSKRK+G QAVE+MEIIR  M+ +ND+LKA
Sbjct: 34  MMYSQGIDMLSDDIMGTRPDRSTEGRTGSSGSKRKQGGQAVETMEIIRNVMEHSNDRLKA 93

Query: 61  IVEWSNLQRQDKRATYAKVM 81
           IVEW N+QRQD  A   +V+
Sbjct: 94  IVEWLNVQRQDASARLVEVV 113

[Close]

BLAST of PI0009330 vs. NCBI nr
Match: TYK08370.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 91.3 bits (225), Expect = 6.0e-15
Identity = 46/78 (58.97%), Postives = 62/78 (79.49%), Query Frame = 0


Query: 2   MYSQGLDMSSDDIASTRLDRSSEGRTGSSGSKRKRGSQAVESMEIIRTAMDFANDQLKAI 61
           MYSQGLDMSSDDI  T+ +R+S+GR  S+GSKRK+GSQ VE+ +IIR+AM++AN+ L  I
Sbjct: 199 MYSQGLDMSSDDIMGTQPERASDGRNASNGSKRKQGSQPVETTKIIRSAMEYANNHLNHI 258

Query: 62  VEWSNLQRQDKRATYAKV 80
            +WS +QRQD   T+ +V
Sbjct: 259 ADWSIIQRQDASVTWQEV 276

[Close]

BLAST of PI0009330 vs. NCBI nr
Match: KAA0047716.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 91.3 bits (225), Expect = 6.0e-15
Identity = 46/78 (58.97%), Postives = 62/78 (79.49%), Query Frame = 0


Query: 2   MYSQGLDMSSDDIASTRLDRSSEGRTGSSGSKRKRGSQAVESMEIIRTAMDFANDQLKAI 61
           MYSQGLDMSSDDI  T+ +R+S+GR  S+GSKRK+GSQ VE+ +IIR+AM++AN+ L  I
Sbjct: 152 MYSQGLDMSSDDIMGTQPERASDGRNASNGSKRKQGSQPVETTKIIRSAMEYANNHLNHI 211

Query: 62  VEWSNLQRQDKRATYAKV 80
            +WS +QRQD   T+ +V
Sbjct: 212 ADWSIIQRQDASVTWQEV 229

[Close]

BLAST of PI0009330 vs. NCBI nr
Match: KAA0060365.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYK22108.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 88.2 bits (217), Expect = 5.0e-14
Identity = 47/75 (62.67%), Postives = 55/75 (73.33%), Query Frame = 0


Query: 5   QGLDMSSDDIASTRLDRSSEGRTGSSGSKRKRGSQAVESMEIIRTAMDFANDQLKAIVEW 64
           QGLDM  DDI  TR  RSSE RTGSSGSKRK+G Q VES+EIIR+AM++ N QLKAI EW
Sbjct: 44  QGLDMLPDDIMGTRPSRSSEDRTGSSGSKRKQGGQMVESVEIIRSAMEYVNGQLKAIAEW 103

Query: 65  SNLQRQDKRATYAKV 80
           SN+   D   ++  V
Sbjct: 104 SNMPNVDDMKSFLDV 118

[Close]

BLAST of PI0009330 vs. NCBI nr
Match: KAA0035413.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYK25738.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 84.3 bits (207), Expect = 7.3e-13
Identity = 45/85 (52.94%), Postives = 59/85 (69.41%), Query Frame = 0


Query: 2   MYSQGLDMSSDDIASTRLDRSSEGRTGSSGSKRKRGSQAVESMEIIRTAMDFANDQLKAI 61
           MYSQGL+MS D++   R  + SEGR  SSGSKRKR  QA +S +++RTA+++ N+QL  I
Sbjct: 256 MYSQGLNMSPDELMGIRNAQVSEGRYVSSGSKRKRKGQATDSGDVLRTAIEYGNEQLNCI 315

Query: 62  VEWSNLQRQDKRATYAKVMPVVGDP 87
            EW  LQRQD   T  +V+PV G P
Sbjct: 316 AEWPILQRQDASQTRQEVVPVGGHP 340

The following BLAST results are available for this feature:

BLAST of PI0009330 vs.


Match Name	E-value	Identity	Description

BLAST of PI0009330 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7V469	2.3e-20	70.00	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5D3CAJ4	2.9e-15	58.97	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7U0G0	2.9e-15	58.97	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5A7V3C0	2.4e-14	62.67	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7SXX8	3.5e-13	52.94	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]

BLAST of PI0009330 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0060529.1	4.7e-20	70.00	retrotransposon protein [Cucumis melo var. makuwa] >TYK00769.1 retrotransposon p...	[more]
TYK08370.1	6.0e-15	58.97	retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0047716.1	6.0e-15	58.97	retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0060365.1	5.0e-14	62.67	retrotransposon protein [Cucumis melo var. makuwa] >TYK22108.1 retrotransposon p...	[more]
KAA0035413.1	7.3e-13	52.94	retrotransposon protein [Cucumis melo var. makuwa] >TYK25738.1 retrotransposon p...	[more]

BLAST of PI0009330 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..41
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 21..37

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
PI0009330.1	PI0009330.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016020	membrane