PI0009240 (gene) Melon (PI 482460) v1

Overview
NamePI0009240
Typegene
OrganismCucumis metuliferus (Melon (PI 482460) v1)
Descriptionlate embryogenesis abundant protein 1
Locationchr01: 27246376 .. 27247131 (-)
RNA-Seq ExpressionPI0009240
SyntenyPI0009240
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CACTTAATTTTCATATTTCATTATATATTTTTCTTCTTTCAATTTTAAAAAACAAATAACACTATTCAGAAAATGGCAAGCCATCAGGATCTTAGCCACCAGGCTGGTGAGATTGTTGGCCAAGCTCAGGTAATTAATTAAATTTTTTTTTTTGTGTACAATTATATATTTTGATCTTAAGAGTAGATTTATACATTGGTTTAATTTTAATTTGAATGATTAATTAGGTCAAGAAAGATGAGATTATGAACCAAGCCACTACTCCTGACCAATCTGCTGCCCAAACTGCCTCTGACCTCAAGGACCAAGCCGCAAATTTCCTTCAACAGGTAATTTTAAAAATTATTGTTGTTGTTGTTATTTAATTAGCAAAATGAACTAAAATGATTTTTTTTTTTTTTTTTTTTGAAATGTGTATAGACTGGAGAGCAAGTGAAGAACATGGCACAAGGAGCAGCTGAGGCAGTGAAAAACACACTTGGGATGAACACTGATAACACTTCAAACACCAACAACAATCCAACCAACAACCCTACCAGCAATCCATCCACTAGAATTTAGAAATATGAAGCATTAACTTCATTTTTTTTCTAAATTTTTTTTGGTTTTTAAAATTAAATTTGTTTTTTTTTCACTATGAGCAAATGAAAAGGGTGAACTTAATATTTTATGTATCAATAAATTGAAAGGAAGAGTGTGATGTATGGATCCCCTTCCTTTTCAAAACTAAATTTAATTTCTAGTCTTTTTGCCCTA

mRNA sequence

CACTTAATTTTCATATTTCATTATATATTTTTCTTCTTTCAATTTTAAAAAACAAATAACACTATTCAGAAAATGGCAAGCCATCAGGATCTTAGCCACCAGGCTGGTGAGATTGTTGGCCAAGCTCAGGTCAAGAAAGATGAGATTATGAACCAAGCCACTACTCCTGACCAATCTGCTGCCCAAACTGCCTCTGACCTCAAGGACCAAGCCGCAAATTTCCTTCAACAGACTGGAGAGCAAGTGAAGAACATGGCACAAGGAGCAGCTGAGGCAGTGAAAAACACACTTGGGATGAACACTGATAACACTTCAAACACCAACAACAATCCAACCAACAACCCTACCAGCAATCCATCCACTAGAATTTAGAAATATGAAGCATTAACTTCATTTTTTTTCTAAATTTTTTTTGGTTTTTAAAATTAAATTTGTTTTTTTTTCACTATGAGCAAATGAAAAGGGTGAACTTAATATTTTATGTATCAATAAATTGAAAGGAAGAGTGTGATGTATGGATCCCCTTCCTTTTCAAAACTAAATTTAATTTCTAGTCTTTTTGCCCTA

Coding sequence (CDS)

ATGGCAAGCCATCAGGATCTTAGCCACCAGGCTGGTGAGATTGTTGGCCAAGCTCAGGTCAAGAAAGATGAGATTATGAACCAAGCCACTACTCCTGACCAATCTGCTGCCCAAACTGCCTCTGACCTCAAGGACCAAGCCGCAAATTTCCTTCAACAGACTGGAGAGCAAGTGAAGAACATGGCACAAGGAGCAGCTGAGGCAGTGAAAAACACACTTGGGATGAACACTGATAACACTTCAAACACCAACAACAATCCAACCAACAACCCTACCAGCAATCCATCCACTAGAATTTAG

Protein sequence

MASHQDLSHQAGEIVGQAQVKKDEIMNQATTPDQSAAQTASDLKDQAANFLQQTGEQVKNMAQGAAEAVKNTLGMNTDNTSNTNNNPTNNPTSNPSTRI
Homology
BLAST of PI0009240 vs. ExPASy Swiss-Prot
Match: O49816 (Late embryogenesis abundant protein 1 OS=Cicer arietinum OX=3827 PE=2 SV=1)

HSP 1 Score: 48.5 bits (114), Expect = 5.0e-05
Identity = 36/80 (45.00%), Postives = 49/80 (61.25%), Query Frame = 0

Query: 10  QAGEIVGQAQVKKDEIMNQATTPDQSAAQTASDLKDQAANFLQQTGEQVKNMAQGAAEAV 69
           +A +  G+A+ K  E+        QS  +TA   KD +A FLQQTGE+VK MAQGA +AV
Sbjct: 104 KAQDTTGRAREKGSEM-------GQSTKETAQSGKDNSAGFLQQTGEKVKGMAQGATDAV 163

Query: 70  KNTLGMNTDNTSNTNNNPTN 90
           K T GM  D+  + ++ PTN
Sbjct: 164 KQTFGMANDD-KDKDHFPTN 175

BLAST of PI0009240 vs. ExPASy Swiss-Prot
Match: O49817 (Late embryogenesis abundant protein 2 OS=Cicer arietinum OX=3827 PE=2 SV=1)

HSP 1 Score: 48.1 bits (113), Expect = 6.5e-05
Identity = 36/85 (42.35%), Postives = 49/85 (57.65%), Query Frame = 0

Query: 5   QDLSHQAGEIVGQAQVKKDEIMNQATTPDQSAAQTASDLKDQAANFLQQTGEQVKNMAQG 64
           Q    +A +  G+A+ K  E+        QS  +TA   KD +A FLQQTGE+ K MAQG
Sbjct: 77  QATKEKAQDTTGRAKEKGSEM-------GQSTKETAQSGKDNSAGFLQQTGEKAKGMAQG 136

Query: 65  AAEAVKNTLGMNTDNTSNTNNNPTN 90
           A +AVK T GM  D+  + ++ PTN
Sbjct: 137 ATDAVKQTFGMTNDD-QDKDHFPTN 153

BLAST of PI0009240 vs. ExPASy TrEMBL
Match: A0A5D3CF20 (Late embryogenesis abundant protein 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold459G002210 PE=4 SV=1)

HSP 1 Score: 149.8 bits (377), Expect = 5.9e-33
Identity = 87/98 (88.78%), Postives = 90/98 (91.84%), Query Frame = 0

Query: 1  MASHQD-LSHQAGEIVGQAQVKKDEIMNQATTPDQSAAQTASDLKDQAANFLQQTGEQVK 60
          MASHQD LSH+AGE VGQAQVKKDE+MNQ T  DQSA QTASDLKDQAANFLQQTGEQVK
Sbjct: 1  MASHQDNLSHKAGETVGQAQVKKDEMMNQPTAHDQSATQTASDLKDQAANFLQQTGEQVK 60

Query: 61 NMAQGAAEAVKNTLGMNTDNTSNTN-NNPTNNPTSNPS 97
          NMAQGAAEAVKNTLGMNTDNTSN N NNPTNNPT+NPS
Sbjct: 61 NMAQGAAEAVKNTLGMNTDNTSNPNSNNPTNNPTTNPS 98

BLAST of PI0009240 vs. ExPASy TrEMBL
Match: A0A1S3CF46 (late embryogenesis abundant protein 1 OS=Cucumis melo OX=3656 GN=LOC103499779 PE=4 SV=1)

HSP 1 Score: 149.8 bits (377), Expect = 5.9e-33
Identity = 87/98 (88.78%), Postives = 90/98 (91.84%), Query Frame = 0

Query: 1  MASHQD-LSHQAGEIVGQAQVKKDEIMNQATTPDQSAAQTASDLKDQAANFLQQTGEQVK 60
          MASHQD LSH+AGE VGQAQVKKDE+MNQ T  DQSA QTASDLKDQAANFLQQTGEQVK
Sbjct: 1  MASHQDNLSHKAGETVGQAQVKKDEMMNQPTAHDQSATQTASDLKDQAANFLQQTGEQVK 60

Query: 61 NMAQGAAEAVKNTLGMNTDNTSNTN-NNPTNNPTSNPS 97
          NMAQGAAEAVKNTLGMNTDNTSN N NNPTNNPT+NPS
Sbjct: 61 NMAQGAAEAVKNTLGMNTDNTSNPNSNNPTNNPTTNPS 98

BLAST of PI0009240 vs. ExPASy TrEMBL
Match: A0A0A0K8V2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G433240 PE=4 SV=1)

HSP 1 Score: 145.6 bits (366), Expect = 1.1e-31
Identity = 89/121 (73.55%), Postives = 96/121 (79.34%), Query Frame = 0

Query: 1   MASHQDLSHQAGEIVGQAQVKKDEIMNQATTPDQ-SAAQTASDLKDQAANFLQQTGEQVK 60
           MASHQDLSH+A EIVGQAQVK+DE+MNQ TT DQ SAAQTA+DLKDQAA+FLQQTGEQVK
Sbjct: 1   MASHQDLSHKADEIVGQAQVKRDEMMNQPTTQDQSSAAQTATDLKDQAASFLQQTGEQVK 60

Query: 61  NMAQGAAEAVKNTLGMNTDNTSNTN---------------------NNPTNNPTSNPSTR 100
           NMAQGAAEAVKNTLGMNTDNTSNTN                     +NPT+NPTSNPSTR
Sbjct: 61  NMAQGAAEAVKNTLGMNTDNTSNTNTHNPANNSANNPTNNPANNPTSNPTSNPTSNPSTR 120

BLAST of PI0009240 vs. ExPASy TrEMBL
Match: A0A6J1KJU5 (late embryogenesis abundant protein 1 OS=Cucurbita maxima OX=3661 GN=LOC111494669 PE=4 SV=1)

HSP 1 Score: 129.0 bits (323), Expect = 1.1e-26
Identity = 82/112 (73.21%), Postives = 88/112 (78.57%), Query Frame = 0

Query: 1   MASHQDLSHQAGEIVGQAQVKKDEIMNQA------------TTPDQ-SAAQTASDLKDQA 60
           MAS QD+SH  GE+VGQAQVKKDE+MNQA            TT DQ SAAQTASDLKDQA
Sbjct: 1   MASQQDISHSVGEVVGQAQVKKDEVMNQAANAAQEAKDSASTTLDQSSAAQTASDLKDQA 60

Query: 61  ANFLQQTGEQVKNMAQGAAEAVKNTLGMNTDNTSNTNNNPTNNPTSNPSTRI 100
           ANFLQQTGEQVKNMAQGAAEAVKNTLGMNTD++SN   N TNNPT+ PS  I
Sbjct: 61  ANFLQQTGEQVKNMAQGAAEAVKNTLGMNTDSSSNAAAN-TNNPTNTPSPTI 111

BLAST of PI0009240 vs. ExPASy TrEMBL
Match: A0A6J1HHY8 (late embryogenesis abundant protein 1 OS=Cucurbita moschata OX=3662 GN=LOC111464504 PE=4 SV=1)

HSP 1 Score: 125.9 bits (315), Expect = 9.1e-26
Identity = 81/112 (72.32%), Postives = 87/112 (77.68%), Query Frame = 0

Query: 1   MASHQDLSHQAGEIVGQAQVKKDEIMNQA------------TTPDQ-SAAQTASDLKDQA 60
           MAS QD+SH  GE VGQAQVKKDE++NQA            TT DQ SAAQTASDLKDQA
Sbjct: 1   MASQQDISHSVGEAVGQAQVKKDEVINQAANSAQEAKDSASTTLDQSSAAQTASDLKDQA 60

Query: 61  ANFLQQTGEQVKNMAQGAAEAVKNTLGMNTDNTSNTNNNPTNNPTSNPSTRI 100
           ANFLQQTGEQVKNMAQGAAEAVKNTLGMNTD++SN   N TNNPT+ PS  I
Sbjct: 61  ANFLQQTGEQVKNMAQGAAEAVKNTLGMNTDSSSNAAAN-TNNPTNTPSPTI 111

BLAST of PI0009240 vs. NCBI nr
Match: XP_008461082.1 (PREDICTED: late embryogenesis abundant protein 1 [Cucumis melo])

HSP 1 Score: 149.8 bits (377), Expect = 1.2e-32
Identity = 87/98 (88.78%), Postives = 90/98 (91.84%), Query Frame = 0

Query: 1  MASHQD-LSHQAGEIVGQAQVKKDEIMNQATTPDQSAAQTASDLKDQAANFLQQTGEQVK 60
          MASHQD LSH+AGE VGQAQVKKDE+MNQ T  DQSA QTASDLKDQAANFLQQTGEQVK
Sbjct: 1  MASHQDNLSHKAGETVGQAQVKKDEMMNQPTAHDQSATQTASDLKDQAANFLQQTGEQVK 60

Query: 61 NMAQGAAEAVKNTLGMNTDNTSNTN-NNPTNNPTSNPS 97
          NMAQGAAEAVKNTLGMNTDNTSN N NNPTNNPT+NPS
Sbjct: 61 NMAQGAAEAVKNTLGMNTDNTSNPNSNNPTNNPTTNPS 98

BLAST of PI0009240 vs. NCBI nr
Match: XP_038899752.1 (late embryogenesis abundant protein 2-like [Benincasa hispida])

HSP 1 Score: 149.8 bits (377), Expect = 1.2e-32
Identity = 88/110 (80.00%), Postives = 95/110 (86.36%), Query Frame = 0

Query: 1   MASHQDLSHQAGEIVGQAQVKKDEIMNQ-----------ATTPDQSAAQTASDLKDQAAN 60
           MASHQD+SH+AGEIVGQAQVKKDEI+NQ           A+T DQS AQTAS+LKDQAAN
Sbjct: 1   MASHQDISHKAGEIVGQAQVKKDEILNQASHAAHDSKDKASTHDQSPAQTASNLKDQAAN 60

Query: 61  FLQQTGEQVKNMAQGAAEAVKNTLGMNTDNTSNTNNNPTNNPTSNPSTRI 100
           FLQQTGEQVKNMAQGAA+AVKNTLGMNTDNT NT NNPTNNPT+NPSTRI
Sbjct: 61  FLQQTGEQVKNMAQGAADAVKNTLGMNTDNTPNT-NNPTNNPTNNPSTRI 109

BLAST of PI0009240 vs. NCBI nr
Match: KAA0058773.1 (late embryogenesis abundant protein 1 [Cucumis melo var. makuwa] >TYK10567.1 late embryogenesis abundant protein 1 [Cucumis melo var. makuwa])

HSP 1 Score: 149.8 bits (377), Expect = 1.2e-32
Identity = 87/98 (88.78%), Postives = 90/98 (91.84%), Query Frame = 0

Query: 1  MASHQD-LSHQAGEIVGQAQVKKDEIMNQATTPDQSAAQTASDLKDQAANFLQQTGEQVK 60
          MASHQD LSH+AGE VGQAQVKKDE+MNQ T  DQSA QTASDLKDQAANFLQQTGEQVK
Sbjct: 1  MASHQDNLSHKAGETVGQAQVKKDEMMNQPTAHDQSATQTASDLKDQAANFLQQTGEQVK 60

Query: 61 NMAQGAAEAVKNTLGMNTDNTSNTN-NNPTNNPTSNPS 97
          NMAQGAAEAVKNTLGMNTDNTSN N NNPTNNPT+NPS
Sbjct: 61 NMAQGAAEAVKNTLGMNTDNTSNPNSNNPTNNPTTNPS 98

BLAST of PI0009240 vs. NCBI nr
Match: XP_004136082.1 (late embryogenesis abundant protein 2 [Cucumis sativus] >KGN45294.1 hypothetical protein Csa_016519 [Cucumis sativus])

HSP 1 Score: 145.6 bits (366), Expect = 2.3e-31
Identity = 89/121 (73.55%), Postives = 96/121 (79.34%), Query Frame = 0

Query: 1   MASHQDLSHQAGEIVGQAQVKKDEIMNQATTPDQ-SAAQTASDLKDQAANFLQQTGEQVK 60
           MASHQDLSH+A EIVGQAQVK+DE+MNQ TT DQ SAAQTA+DLKDQAA+FLQQTGEQVK
Sbjct: 1   MASHQDLSHKADEIVGQAQVKRDEMMNQPTTQDQSSAAQTATDLKDQAASFLQQTGEQVK 60

Query: 61  NMAQGAAEAVKNTLGMNTDNTSNTN---------------------NNPTNNPTSNPSTR 100
           NMAQGAAEAVKNTLGMNTDNTSNTN                     +NPT+NPTSNPSTR
Sbjct: 61  NMAQGAAEAVKNTLGMNTDNTSNTNTHNPANNSANNPTNNPANNPTSNPTSNPTSNPSTR 120

BLAST of PI0009240 vs. NCBI nr
Match: XP_023000409.1 (late embryogenesis abundant protein 1 [Cucurbita maxima])

HSP 1 Score: 129.0 bits (323), Expect = 2.2e-26
Identity = 82/112 (73.21%), Postives = 88/112 (78.57%), Query Frame = 0

Query: 1   MASHQDLSHQAGEIVGQAQVKKDEIMNQA------------TTPDQ-SAAQTASDLKDQA 60
           MAS QD+SH  GE+VGQAQVKKDE+MNQA            TT DQ SAAQTASDLKDQA
Sbjct: 1   MASQQDISHSVGEVVGQAQVKKDEVMNQAANAAQEAKDSASTTLDQSSAAQTASDLKDQA 60

Query: 61  ANFLQQTGEQVKNMAQGAAEAVKNTLGMNTDNTSNTNNNPTNNPTSNPSTRI 100
           ANFLQQTGEQVKNMAQGAAEAVKNTLGMNTD++SN   N TNNPT+ PS  I
Sbjct: 61  ANFLQQTGEQVKNMAQGAAEAVKNTLGMNTDSSSNAAAN-TNNPTNTPSPTI 111

BLAST of PI0009240 vs. TAIR 10
Match: AT1G52680.1 (late embryogenesis abundant protein-related / LEA protein-related )

HSP 1 Score: 65.9 bits (159), Expect = 2.1e-11
Identity = 51/115 (44.35%), Postives = 69/115 (60.00%), Query Frame = 0

Query: 1   MASHQDLSHQAGEIVGQAQVKKDEIMNQAT----------TPDQSAAQTASD-----LKD 60
           M+S Q LSH AGE+ GQ Q+KK+E +N  +          T  QS   +  D     L  
Sbjct: 1   MSSSQQLSHSAGEVTGQVQLKKEEYLNNVSHAMNQNADHHTHSQSQLHSEHDQNNPSLIS 60

Query: 61  QAANFLQQTGEQVKNMAQGAAEAVKNTLGMNTDNTSNTNNNPTNNPTSN-PSTRI 100
           QA++ +QQTG QVKNMAQGAA+AVKNTLGM+    +N+ ++P     SN P ++I
Sbjct: 61  QASSVIQQTGGQVKNMAQGAADAVKNTLGMSP--ATNSPSSPAGTTRSNKPGSKI 113

BLAST of PI0009240 vs. TAIR 10
Match: AT1G15415.1 (The protein encoded by this gene was identified as a part of pollen proteome by mass spec analysis. It has weak homology to LEA (late embryo abundant) proteins. Encodes protein phosphatase 2A (PP2A) B'gamma subunit. Targeted to nucleus and cytosol. )

HSP 1 Score: 52.8 bits (125), Expect = 1.9e-07
Identity = 44/100 (44.00%), Postives = 57/100 (57.00%), Query Frame = 0

Query: 1  MASHQD--LSHQAGEIVGQAQVKKDEIMNQATTPDQSAAQTASDLKDQAANFLQQTGEQV 60
          MAS QD   S +AG+IVGQA VK+++  N +                QA+ FLQQ GE+V
Sbjct: 1  MASGQDEEFSVRAGQIVGQAHVKENDCNNSS----------------QASGFLQQKGEKV 60

Query: 61 KNMAQGAAEAVKNTLGMNTDNTSN-TNNNPTNNPTSNPST 98
          K+MA  A+EAVKN LG+N DN     N NP +    N +T
Sbjct: 61 KSMAHDASEAVKNKLGINNDNNEEYKNKNPLDKKNPNNTT 84

BLAST of PI0009240 vs. TAIR 10
Match: AT5G38760.1 (Late embryogenesis abundant protein (LEA) family protein )

HSP 1 Score: 50.1 bits (118), Expect = 1.2e-06
Identity = 30/75 (40.00%), Postives = 46/75 (61.33%), Query Frame = 0

Query: 2  ASHQDLSHQAGEIVGQAQVKKDEIMNQATTPDQSAAQTASDLKDQAANFLQQTGEQVKNM 61
          ++ Q++S QAG+  GQ Q K   +M++A+   QSA ++           L++TG+Q+K  
Sbjct: 3  SNSQNISFQAGQAKGQTQEKASTMMDKASNAAQSAKES-----------LKETGQQIKEK 62

Query: 62 AQGAAEAVKNTLGMN 77
          AQGA E+VKN  GMN
Sbjct: 63 AQGATESVKNATGMN 66

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
O498165.0e-0545.00Late embryogenesis abundant protein 1 OS=Cicer arietinum OX=3827 PE=2 SV=1[more]
O498176.5e-0542.35Late embryogenesis abundant protein 2 OS=Cicer arietinum OX=3827 PE=2 SV=1[more]
Match NameE-valueIdentityDescription
A0A5D3CF205.9e-3388.78Late embryogenesis abundant protein 1 OS=Cucumis melo var. makuwa OX=1194695 GN=... [more]
A0A1S3CF465.9e-3388.78late embryogenesis abundant protein 1 OS=Cucumis melo OX=3656 GN=LOC103499779 PE... [more]
A0A0A0K8V21.1e-3173.55Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G433240 PE=4 SV=1[more]
A0A6J1KJU51.1e-2673.21late embryogenesis abundant protein 1 OS=Cucurbita maxima OX=3661 GN=LOC11149466... [more]
A0A6J1HHY89.1e-2672.32late embryogenesis abundant protein 1 OS=Cucurbita moschata OX=3662 GN=LOC111464... [more]
Match NameE-valueIdentityDescription
XP_008461082.11.2e-3288.78PREDICTED: late embryogenesis abundant protein 1 [Cucumis melo][more]
XP_038899752.11.2e-3280.00late embryogenesis abundant protein 2-like [Benincasa hispida][more]
KAA0058773.11.2e-3288.78late embryogenesis abundant protein 1 [Cucumis melo var. makuwa] >TYK10567.1 lat... [more]
XP_004136082.12.3e-3173.55late embryogenesis abundant protein 2 [Cucumis sativus] >KGN45294.1 hypothetical... [more]
XP_023000409.12.2e-2673.21late embryogenesis abundant protein 1 [Cucurbita maxima][more]
Match NameE-valueIdentityDescription
AT1G52680.12.1e-1144.35late embryogenesis abundant protein-related / LEA protein-related [more]
AT1G15415.11.9e-0744.00The protein encoded by this gene was identified as a part of pollen proteome by... [more]
AT5G38760.11.2e-0640.00Late embryogenesis abundant protein (LEA) family protein [more]
InterPro
Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 70..99
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 23..43
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..43
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 55..99
NoneNo IPR availablePANTHERPTHR34191:SF9F6D8.10coord: 1..80
IPR039624Stress-induced protein KIN1/KIN2PANTHERPTHR34191LATE EMBRYOGENESIS ABUNDANT PROTEIN (LEA) FAMILY PROTEINcoord: 1..80

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
PI0009240.1PI0009240.1mRNA