PI0008804 (gene) Melon (PI 482460) v1

Overview
NamePI0008804
Typegene
OrganismCucumis metuliferus (Melon (PI 482460) v1)
Description50S ribosomal protein L7/L12
Locationchr08: 20285323 .. 20286561 (+)
RNA-Seq ExpressionPI0008804
SyntenyPI0008804
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TGAAGCCCTAATGAATTCAGACACCTGTAGAACCTCGGCGCTTCAATGAAAGACGATTCCCTGTGACTTACCAATACCATCGTCGGTCTCCGCCAGAAACCCTAATTCCTCGAAATGCCATCAATTGCCTCCAAACTTCCGGCCAAATCTTTAGTGAGACTTCTCACTGTCGCTCCAAGATCATTGCTAGTTCGGTCCCTCAGCACCGTCGCCGAGGAACGAACTCAGAAACTCGAGAGGATCGCCGATGAGCTCCTCGGCCTCACTAAAATTGAACGACACGACTATGCCATCCTCTTCCGGTTTAAAATGGGTTTAAACAAGTACGGGCCTGCAGTTTCTGGGCTAAGTGCACCAGGTTCAGCCGCCGCCGGATCTCCCGCCGCCGAAGCAAAAGAAGCTGAGAAAACTGTTTTTGATATAAAGCTCGAGAAATTTGATGCGGCGGCGAAGATCAAGATCATAAAGGAGGTAAGAACGTTCACTGATTTGGGTCTGAAAGAGGCTAAGGATTTGGTGGAGAAGGTGCCCGTGGTGCTCAAGAAGGGAGTAACGAAAGATCAAGGAAGCCCAATTATCGAGAAGCTTAAGGAATTGGGAGCTACTGCGGTATTGGAATGACCTTTTTTTTTCTTCTCTGTCATTTCAACGTTCTTTTTGGAGTAAAATAATGCTGCCCTTGTTAGAGGACTATCGAAATTTTTTCAAAGAGGAAGATTTATGAAGATTACAATTCAAAATCATATTGTTGCTTGACTTGATATTCAAAGTACATTTGGTTTTTTCCCCTTTGGCATTTCTCCGCCGGATTTGCAATGTGAATCAGTTTCATTCTGACGTTCTTAGCCGGACCTGAAGAATTTAGCCAATCTATAACCCCCATGTAAACGAAGAGGATGAATCTGTTCTAACAGCTCTAAATCTTTCTCTACTCATGTGAAATGTGATATATGAAAAATCTCTACTTCTAGTTTAGCAAAATTTCTGAGGGAAAAGCTATGTATTTTGTTCTTTCCATGAGATTGTTGAAGAACAATTAAACAATTTTAATTTCTGTTGCTTCTCTTCTCATGTGGACTTAAATTTTTGGCAAAAAGTTGTCAAAGAATTGTTCTTTGTTCTTTGACGATCGATTCATTTCTTCCTTTTTTTCATCGGTTGTTTATAAGGCGTTTCTAGAATCAAAGTGGTGAATTATACATCTAATTAGTCAGATTTAATGACAGATTCTCCTTTTCC

mRNA sequence

TGAAGCCCTAATGAATTCAGACACCTGTAGAACCTCGGCGCTTCAATGAAAGACGATTCCCTGTGACTTACCAATACCATCGTCGGTCTCCGCCAGAAACCCTAATTCCTCGAAATGCCATCAATTGCCTCCAAACTTCCGGCCAAATCTTTAGTGAGACTTCTCACTGTCGCTCCAAGATCATTGCTAGTTCGGTCCCTCAGCACCGTCGCCGAGGAACGAACTCAGAAACTCGAGAGGATCGCCGATGAGCTCCTCGGCCTCACTAAAATTGAACGACACGACTATGCCATCCTCTTCCGGTTTAAAATGGGTTTAAACAAGTACGGGCCTGCAGTTTCTGGGCTAAGTGCACCAGGTTCAGCCGCCGCCGGATCTCCCGCCGCCGAAGCAAAAGAAGCTGAGAAAACTGTTTTTGATATAAAGCTCGAGAAATTTGATGCGGCGGCGAAGATCAAGATCATAAAGGAGGTAAGAACGTTCACTGATTTGGGTCTGAAAGAGGCTAAGGATTTGGTGGAGAAGGTGCCCGTGGTGCTCAAGAAGGGAGTAACGAAAGATCAAGGAAGCCCAATTATCGAGAAGCTTAAGGAATTGGGAGCTACTGCGGTATTGGAATGACCTTTTTTTTTCTTCTCTGTCATTTCAACGTTCTTTTTGGAGTAAAATAATGCTGCCCTTGTTAGAGGACTATCGAAATTTTTTCAAAGAGGAAGATTTATGAAGATTACAATTCAAAATCATATTGTTGCTTGACTTGATATTCAAAGTACATTTGGTTTTTTCCCCTTTGGCATTTCTCCGCCGGATTTGCAATGTGAATCAGTTTCATTCTGACGTTCTTAGCCGGACCTGAAGAATTTAGCCAATCTATAACCCCCATGTAAACGAAGAGGATGAATCTGTTCTAACAGCTCTAAATCTTTCTCTACTCATGTGAAATGTGATATATGAAAAATCTCTACTTCTAGTTTAGCAAAATTTCTGAGGGAAAAGCTATGTATTTTGTTCTTTCCATGAGATTGTTGAAGAACAATTAAACAATTTTAATTTCTGTTGCTTCTCTTCTCATGTGGACTTAAATTTTTGGCAAAAAGTTGTCAAAGAATTGTTCTTTGTTCTTTGACGATCGATTCATTTCTTCCTTTTTTTCATCGGTTGTTTATAAGGCGTTTCTAGAATCAAAGTGGTGAATTATACATCTAATTAGTCAGATTTAATGACAGATTCTCCTTTTCC

Coding sequence (CDS)

ATGCCATCAATTGCCTCCAAACTTCCGGCCAAATCTTTAGTGAGACTTCTCACTGTCGCTCCAAGATCATTGCTAGTTCGGTCCCTCAGCACCGTCGCCGAGGAACGAACTCAGAAACTCGAGAGGATCGCCGATGAGCTCCTCGGCCTCACTAAAATTGAACGACACGACTATGCCATCCTCTTCCGGTTTAAAATGGGTTTAAACAAGTACGGGCCTGCAGTTTCTGGGCTAAGTGCACCAGGTTCAGCCGCCGCCGGATCTCCCGCCGCCGAAGCAAAAGAAGCTGAGAAAACTGTTTTTGATATAAAGCTCGAGAAATTTGATGCGGCGGCGAAGATCAAGATCATAAAGGAGGTAAGAACGTTCACTGATTTGGGTCTGAAAGAGGCTAAGGATTTGGTGGAGAAGGTGCCCGTGGTGCTCAAGAAGGGAGTAACGAAAGATCAAGGAAGCCCAATTATCGAGAAGCTTAAGGAATTGGGAGCTACTGCGGTATTGGAATGA

Protein sequence

MPSIASKLPAKSLVRLLTVAPRSLLVRSLSTVAEERTQKLERIADELLGLTKIERHDYAILFRFKMGLNKYGPAVSGLSAPGSAAAGSPAAEAKEAEKTVFDIKLEKFDAAAKIKIIKEVRTFTDLGLKEAKDLVEKVPVVLKKGVTKDQGSPIIEKLKELGATAVLE
Homology
[Close]
BLAST of PI0008804 vs. ExPASy Swiss-Prot
Match: P41189 (50S ribosomal protein L7/L12 OS=Liberibacter africanus OX=34020 GN=rplL PE=3 SV=1)

HSP 1 Score: 84.7 bits (208), Expect = 1.1e-15
Identity = 53/128 (41.41%), Postives = 74/128 (57.81%), Query Frame = 0 

Query: 40  LERIADELLGLTKIERHDYAILFRFKMGLNKYGPAVSGLSAPGSAAAGSPAAEAKEAEKT 99
           +E I ++L  LT ++  + +     + G++   P     SA G +AA         AEKT
Sbjct: 4   IESIVEKLSSLTLLQAAELSKRLEEEWGVSAAAPVAVVASAAGESAAA-------VAEKT 63

Query: 100 VFDIKLEKFDAAAKIKIIKEVRTFTDLGLKEAKDLVEKVPVVLKKGVTKDQGSPIIEKLK 159
            F++ LE FDA  KI +IKEVR  T+LGLKEAKD VE  P  LK GV+KD+   + +KL+
Sbjct: 64  EFEVFLEGFDAKKKISVIKEVRAITELGLKEAKDFVESAPKSLKTGVSKDEAEELKKKLE 123

Query: 160 ELGATAVL 168
             GAT +L
Sbjct: 124 AAGATIIL 124

[Close]
BLAST of PI0008804 vs. ExPASy Swiss-Prot
Match: A9BDG4 (50S ribosomal protein L7/L12 OS=Prochlorococcus marinus (strain MIT 9211) OX=93059 GN=rplL PE=3 SV=1)

HSP 1 Score: 81.3 bits (199), Expect = 1.2e-14
Identity = 50/132 (37.88%), Postives = 75/132 (56.82%), Query Frame = 0 

Query: 37  TQKLERIADELLGLTKIERHDYAILFRFKMGLNKYGPAVSGLSAPGSAAAGSPAAEAKEA 96
           ++K + I D L  L+ +E  +         G++    A   ++APG+    S A EA E 
Sbjct: 2   SKKTDEILDSLKSLSLLEASELVKQIEEAFGVSAAASAGVVMAAPGAGGGASAAGEAAE- 61

Query: 97  EKTVFDIKLEKFDAAAKIKIIKEVRTFTDLGLKEAKDLVEKVPVVLKKGVTKDQGSPIIE 156
           EKT FD+ LE FDAAAKIK++KEVR  T LGL EAK +VE  P  +K+G +K+    + +
Sbjct: 62  EKTEFDVILESFDAAAKIKVLKEVRNATGLGLGEAKAMVEAAPKTIKEGASKEDAEALKK 121

Query: 157 KLKELGATAVLE 169
            ++ +G    L+
Sbjct: 122 AIEAVGGKVTLK 132

[Close]
BLAST of PI0008804 vs. ExPASy Swiss-Prot
Match: B6JER8 (50S ribosomal protein L7/L12 OS=Oligotropha carboxidovorans (strain ATCC 49405 / DSM 1227 / KCTC 32145 / OM5) OX=504832 GN=rplL PE=3 SV=1)

HSP 1 Score: 80.9 bits (198), Expect = 1.5e-14
Identity = 60/132 (45.45%), Postives = 79/132 (59.85%), Query Frame = 0 

Query: 40  LERIADELLGLTKIERHDYAILFRFKMGLNKYGPAVSGLSAPGSAAAGSPAAEAKEAEKT 99
           L++I D+L  LT +E  + A L   K G++    AV+  +APG+AA G+PA      EKT
Sbjct: 4   LQKIVDDLSSLTVLEAAELAKLLEEKWGVSA-AAAVAVAAAPGAAAGGAPA-----EEKT 63

Query: 100 VFDIKLEKFDAAA---KIKIIKEVRTFTDLGLKEAKDLVEKVPVVLKKGVTKDQGSPIIE 159
            F + L    AAA   KI++IKEVR  T LGLKEAKDLVE  P  LK+GV KD+   I  
Sbjct: 64  EFQVVL----AAAGDKKIEVIKEVRAITGLGLKEAKDLVEGAPKPLKEGVAKDEAEKIKA 123

Query: 160 KLKELGATAVLE 169
            L++ GA   L+
Sbjct: 124 ALEKAGAKVELK 125

[Close]
BLAST of PI0008804 vs. ExPASy Swiss-Prot
Match: P02398 (50S ribosomal protein L12, chloroplastic OS=Spinacia oleracea OX=3562 GN=RPL12 PE=1 SV=2)

HSP 1 Score: 80.5 bits (197), Expect = 2.0e-14
Identity = 51/133 (38.35%), Postives = 82/133 (61.65%), Query Frame = 0 

Query: 33  AEERTQKLERIADELLGLTKIERHDYAILFRFKMGLN--KYGPAVSGLSAPGSAAAGSPA 92
           A E  +K+E++  +L GLT  E        + K+G++   + PA + ++APG+ A  +PA
Sbjct: 57  AVEAPEKIEQLGTQLSGLTLEEARVLVDWLQDKLGVSAASFAPA-AAVAAPGAPADAAPA 116

Query: 93  AEAKEAEKTVFDIKLEKFDAAAKIKIIKEVRTFTDLGLKEAKDLVEKVPVVLKKGVTKDQ 152
            E    EKT FD+ +++  + A+I +IK VR  T LGLKEAK+L+E +P  LK+GV+KD 
Sbjct: 117 VE----EKTEFDVSIDEVPSNARISVIKAVRALTSLGLKEAKELIEGLPKKLKEGVSKDD 176

Query: 153 GSPIIEKLKELGA 164
                ++L++ GA
Sbjct: 177 AEDAKKQLEDAGA 184

[Close]
BLAST of PI0008804 vs. ExPASy Swiss-Prot
Match: Q1MIF0 (50S ribosomal protein L7/L12 OS=Rhizobium leguminosarum bv. viciae (strain 3841) OX=216596 GN=rplL PE=3 SV=1)

HSP 1 Score: 80.1 bits (196), Expect = 2.6e-14
Identity = 55/126 (43.65%), Postives = 73/126 (57.94%), Query Frame = 0 

Query: 40  LERIADELLGLTKIERHDYAILFRFKMGLNKYGPAVSGLSAPGSAAAGSPAAEAKEAEKT 99
           L +I D+L  LT +E  + + L   K G++   P         +AAAG  AA   E EKT
Sbjct: 4   LAKIVDDLSSLTVLEAAELSKLLEEKWGVSAAAPVAV------AAAAGGAAAAVVEEEKT 63

Query: 100 VFDIKLEKFDAAAKIKIIKEVRTFTDLGLKEAKDLVEKVPVVLKKGVTKDQGSPIIEKLK 159
            FD+ L +   A KI +IKEVR  T LGLKEAKDLVE  P  +K+GV K + + I +KL+
Sbjct: 64  EFDVILVE-AGANKINVIKEVRAITGLGLKEAKDLVEAAPKAVKEGVNKAEAADIKKKLE 122

Query: 160 ELGATA 166
           + GA A
Sbjct: 124 DAGAKA 122

[Close]
BLAST of PI0008804 vs. ExPASy TrEMBL
Match: A0A0A0KLI9 (Ribosomal_L12 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G495700 PE=4 SV=1)

HSP 1 Score: 292.7 bits (748), Expect = 9.5e-76
Identity = 162/168 (96.43%), Postives = 164/168 (97.62%), Query Frame = 0 

Query: 1   MPSIASKLPAKSLVRLLTVAPRSLLVRSLSTVAEERTQKLERIADELLGLTKIERHDYAI 60
           MPSIASKLPAKSLVRLLTVAPR LLVRSLSTVAEERTQKLERIADELL LTKIERHDYAI
Sbjct: 1   MPSIASKLPAKSLVRLLTVAPRPLLVRSLSTVAEERTQKLERIADELLDLTKIERHDYAI 60

Query: 61  LFRFKMGLNKYGPAVSGLSAPGSAAAGSPAAEAKEAEKTVFDIKLEKFDAAAKIKIIKEV 120
           LFR+KMGLNKYGPAVSGLSAPGSAAAGS AAE KEAEKTVFDIKLEKFDAAAKIKIIKEV
Sbjct: 61  LFRYKMGLNKYGPAVSGLSAPGSAAAGSAAAETKEAEKTVFDIKLEKFDAAAKIKIIKEV 120

Query: 121 RTFTDLGLKEAKDLVEKVPVVLKKGVTKDQGSPIIEKLKELGATAVLE 169
           RTFTDLGLKEAKDLVEKVPVVLKKGVTKDQG+PIIEKLKELGATAVLE
Sbjct: 121 RTFTDLGLKEAKDLVEKVPVVLKKGVTKDQGNPIIEKLKELGATAVLE 168

[Close]
BLAST of PI0008804 vs. ExPASy TrEMBL
Match: A0A5D3CQX4 (50S ribosomal protein L7/L12 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold255G003980 PE=4 SV=1)

HSP 1 Score: 287.7 bits (735), Expect = 3.1e-74
Identity = 159/168 (94.64%), Postives = 162/168 (96.43%), Query Frame = 0 

Query: 1   MPSIASKLPAKSLVRLLTVAPRSLLVRSLSTVAEERTQKLERIADELLGLTKIERHDYAI 60
           MPSIASKLPAKSLVRLLT+APR LLVRSLSTVAEERTQKLERIADELL L KIERHDYAI
Sbjct: 1   MPSIASKLPAKSLVRLLTIAPRPLLVRSLSTVAEERTQKLERIADELLDLNKIERHDYAI 60

Query: 61  LFRFKMGLNKYGPAVSGLSAPGSAAAGSPAAEAKEAEKTVFDIKLEKFDAAAKIKIIKEV 120
           LF +KMGLNKYGPAVSGLSAPGSAAAGS AAE KEAEKTVFDIKLEKFDAAAKIKIIKEV
Sbjct: 61  LFGYKMGLNKYGPAVSGLSAPGSAAAGSAAAETKEAEKTVFDIKLEKFDAAAKIKIIKEV 120

Query: 121 RTFTDLGLKEAKDLVEKVPVVLKKGVTKDQGSPIIEKLKELGATAVLE 169
           RTFTDLGLKEAKDLVEKVPVVLKKGVTKDQG+PIIEKLKELGATAVLE
Sbjct: 121 RTFTDLGLKEAKDLVEKVPVVLKKGVTKDQGNPIIEKLKELGATAVLE 168

[Close]
BLAST of PI0008804 vs. ExPASy TrEMBL
Match: A0A1S3B113 (50S ribosomal protein L7/L12 OS=Cucumis melo OX=3656 GN=LOC103484859 PE=4 SV=1)

HSP 1 Score: 287.7 bits (735), Expect = 3.1e-74
Identity = 159/168 (94.64%), Postives = 162/168 (96.43%), Query Frame = 0 

Query: 1   MPSIASKLPAKSLVRLLTVAPRSLLVRSLSTVAEERTQKLERIADELLGLTKIERHDYAI 60
           MPSIASKLPAKSLVRLLT+APR LLVRSLSTVAEERTQKLERIADELL L KIERHDYAI
Sbjct: 1   MPSIASKLPAKSLVRLLTIAPRPLLVRSLSTVAEERTQKLERIADELLDLNKIERHDYAI 60

Query: 61  LFRFKMGLNKYGPAVSGLSAPGSAAAGSPAAEAKEAEKTVFDIKLEKFDAAAKIKIIKEV 120
           LF +KMGLNKYGPAVSGLSAPGSAAAGS AAE KEAEKTVFDIKLEKFDAAAKIKIIKEV
Sbjct: 61  LFGYKMGLNKYGPAVSGLSAPGSAAAGSAAAETKEAEKTVFDIKLEKFDAAAKIKIIKEV 120

Query: 121 RTFTDLGLKEAKDLVEKVPVVLKKGVTKDQGSPIIEKLKELGATAVLE 169
           RTFTDLGLKEAKDLVEKVPVVLKKGVTKDQG+PIIEKLKELGATAVLE
Sbjct: 121 RTFTDLGLKEAKDLVEKVPVVLKKGVTKDQGNPIIEKLKELGATAVLE 168

[Close]
BLAST of PI0008804 vs. ExPASy TrEMBL
Match: A0A6J1BTU0 (uncharacterized protein LOC111005295 OS=Momordica charantia OX=3673 GN=LOC111005295 PE=4 SV=1)

HSP 1 Score: 284.6 bits (727), Expect = 2.6e-73
Identity = 156/168 (92.86%), Postives = 164/168 (97.62%), Query Frame = 0 

Query: 1   MPSIASKLPAKSLVRLLTVAPRSLLVRSLSTVAEERTQKLERIADELLGLTKIERHDYAI 60
           MPSIASKLPAK+LVRLLTVAPR LLVRSLSTV++ER QKLERIADELLGL+KIERHDYAI
Sbjct: 1   MPSIASKLPAKALVRLLTVAPRPLLVRSLSTVSQERIQKLERIADELLGLSKIERHDYAI 60

Query: 61  LFRFKMGLNKYGPAVSGLSAPGSAAAGSPAAEAKEAEKTVFDIKLEKFDAAAKIKIIKEV 120
           LFR KMGLNKYGPAVSGLSAPGSA+AGS +AEAKEAEKTVFDIKLEKFDAAAKIKIIKEV
Sbjct: 61  LFRLKMGLNKYGPAVSGLSAPGSASAGSASAEAKEAEKTVFDIKLEKFDAAAKIKIIKEV 120

Query: 121 RTFTDLGLKEAKDLVEKVPVVLKKGVTKDQGSPIIEKLKELGATAVLE 169
           RTFT+LGLKEAKDLVEKVPVVLKKGVTKDQG+PIIEKLKELGATAVLE
Sbjct: 121 RTFTELGLKEAKDLVEKVPVVLKKGVTKDQGNPIIEKLKELGATAVLE 168

[Close]
BLAST of PI0008804 vs. ExPASy TrEMBL
Match: A0A6J1KLN2 (uncharacterized protein LOC111496860 OS=Cucurbita maxima OX=3661 GN=LOC111496860 PE=4 SV=1)

HSP 1 Score: 281.6 bits (719), Expect = 2.2e-72
Identity = 153/168 (91.07%), Postives = 162/168 (96.43%), Query Frame = 0 

Query: 1   MPSIASKLPAKSLVRLLTVAPRSLLVRSLSTVAEERTQKLERIADELLGLTKIERHDYAI 60
           MPSI SKLPAK+L RLLT+APR LLVRSLSTV+EERTQKLERIAD+LLGLTKIERHDYAI
Sbjct: 1   MPSIVSKLPAKALGRLLTIAPRQLLVRSLSTVSEERTQKLERIADDLLGLTKIERHDYAI 60

Query: 61  LFRFKMGLNKYGPAVSGLSAPGSAAAGSPAAEAKEAEKTVFDIKLEKFDAAAKIKIIKEV 120
           LFR KMGLNKYGPAVSGLSAPGSA+AGS +A AKEAEKTVFDIKLEKFDAAAKIKIIKEV
Sbjct: 61  LFRLKMGLNKYGPAVSGLSAPGSASAGSASAVAKEAEKTVFDIKLEKFDAAAKIKIIKEV 120

Query: 121 RTFTDLGLKEAKDLVEKVPVVLKKGVTKDQGSPIIEKLKELGATAVLE 169
           RTFTDLGLKEAKDLVEKVPVVLK+GVTKDQG+PI+EKLKELGATAVLE
Sbjct: 121 RTFTDLGLKEAKDLVEKVPVVLKRGVTKDQGNPIVEKLKELGATAVLE 168

[Close]
BLAST of PI0008804 vs. NCBI nr
Match: XP_004141864.1 (uncharacterized protein LOC101203973 [Cucumis sativus] >KGN48616.1 hypothetical protein Csa_003359 [Cucumis sativus])

HSP 1 Score: 292.7 bits (748), Expect = 2.0e-75
Identity = 162/168 (96.43%), Postives = 164/168 (97.62%), Query Frame = 0 

Query: 1   MPSIASKLPAKSLVRLLTVAPRSLLVRSLSTVAEERTQKLERIADELLGLTKIERHDYAI 60
           MPSIASKLPAKSLVRLLTVAPR LLVRSLSTVAEERTQKLERIADELL LTKIERHDYAI
Sbjct: 1   MPSIASKLPAKSLVRLLTVAPRPLLVRSLSTVAEERTQKLERIADELLDLTKIERHDYAI 60

Query: 61  LFRFKMGLNKYGPAVSGLSAPGSAAAGSPAAEAKEAEKTVFDIKLEKFDAAAKIKIIKEV 120
           LFR+KMGLNKYGPAVSGLSAPGSAAAGS AAE KEAEKTVFDIKLEKFDAAAKIKIIKEV
Sbjct: 61  LFRYKMGLNKYGPAVSGLSAPGSAAAGSAAAETKEAEKTVFDIKLEKFDAAAKIKIIKEV 120

Query: 121 RTFTDLGLKEAKDLVEKVPVVLKKGVTKDQGSPIIEKLKELGATAVLE 169
           RTFTDLGLKEAKDLVEKVPVVLKKGVTKDQG+PIIEKLKELGATAVLE
Sbjct: 121 RTFTDLGLKEAKDLVEKVPVVLKKGVTKDQGNPIIEKLKELGATAVLE 168

[Close]
BLAST of PI0008804 vs. NCBI nr
Match: XP_038882677.1 (50S ribosomal protein L7/L12 [Benincasa hispida])

HSP 1 Score: 288.1 bits (736), Expect = 4.8e-74
Identity = 159/168 (94.64%), Postives = 164/168 (97.62%), Query Frame = 0 

Query: 1   MPSIASKLPAKSLVRLLTVAPRSLLVRSLSTVAEERTQKLERIADELLGLTKIERHDYAI 60
           MPSIASKLPAK+LVRLLTVAPR LLVRSLSTV++ERTQKLERIADELL LTKIERHDYAI
Sbjct: 1   MPSIASKLPAKALVRLLTVAPRPLLVRSLSTVSKERTQKLERIADELLDLTKIERHDYAI 60

Query: 61  LFRFKMGLNKYGPAVSGLSAPGSAAAGSPAAEAKEAEKTVFDIKLEKFDAAAKIKIIKEV 120
           LFR KMGLNKYGPAVSGLSAPGSAAAGS +AEAKEAEKTVFDIKLEKFDAAAKIKIIKEV
Sbjct: 61  LFRLKMGLNKYGPAVSGLSAPGSAAAGSASAEAKEAEKTVFDIKLEKFDAAAKIKIIKEV 120

Query: 121 RTFTDLGLKEAKDLVEKVPVVLKKGVTKDQGSPIIEKLKELGATAVLE 169
           RTFTDLGLKEAKDLVEKVPVVLKKGVTKDQG+PIIEKLKELGATAVLE
Sbjct: 121 RTFTDLGLKEAKDLVEKVPVVLKKGVTKDQGNPIIEKLKELGATAVLE 168

[Close]
BLAST of PI0008804 vs. NCBI nr
Match: XP_008440399.1 (PREDICTED: 50S ribosomal protein L7/L12 [Cucumis melo] >KAA0036410.1 50S ribosomal protein L7/L12 [Cucumis melo var. makuwa] >TYK12806.1 50S ribosomal protein L7/L12 [Cucumis melo var. makuwa])

HSP 1 Score: 287.7 bits (735), Expect = 6.3e-74
Identity = 159/168 (94.64%), Postives = 162/168 (96.43%), Query Frame = 0 

Query: 1   MPSIASKLPAKSLVRLLTVAPRSLLVRSLSTVAEERTQKLERIADELLGLTKIERHDYAI 60
           MPSIASKLPAKSLVRLLT+APR LLVRSLSTVAEERTQKLERIADELL L KIERHDYAI
Sbjct: 1   MPSIASKLPAKSLVRLLTIAPRPLLVRSLSTVAEERTQKLERIADELLDLNKIERHDYAI 60

Query: 61  LFRFKMGLNKYGPAVSGLSAPGSAAAGSPAAEAKEAEKTVFDIKLEKFDAAAKIKIIKEV 120
           LF +KMGLNKYGPAVSGLSAPGSAAAGS AAE KEAEKTVFDIKLEKFDAAAKIKIIKEV
Sbjct: 61  LFGYKMGLNKYGPAVSGLSAPGSAAAGSAAAETKEAEKTVFDIKLEKFDAAAKIKIIKEV 120

Query: 121 RTFTDLGLKEAKDLVEKVPVVLKKGVTKDQGSPIIEKLKELGATAVLE 169
           RTFTDLGLKEAKDLVEKVPVVLKKGVTKDQG+PIIEKLKELGATAVLE
Sbjct: 121 RTFTDLGLKEAKDLVEKVPVVLKKGVTKDQGNPIIEKLKELGATAVLE 168

[Close]
BLAST of PI0008804 vs. NCBI nr
Match: XP_022132437.1 (uncharacterized protein LOC111005295 [Momordica charantia])

HSP 1 Score: 284.6 bits (727), Expect = 5.4e-73
Identity = 156/168 (92.86%), Postives = 164/168 (97.62%), Query Frame = 0 

Query: 1   MPSIASKLPAKSLVRLLTVAPRSLLVRSLSTVAEERTQKLERIADELLGLTKIERHDYAI 60
           MPSIASKLPAK+LVRLLTVAPR LLVRSLSTV++ER QKLERIADELLGL+KIERHDYAI
Sbjct: 1   MPSIASKLPAKALVRLLTVAPRPLLVRSLSTVSQERIQKLERIADELLGLSKIERHDYAI 60

Query: 61  LFRFKMGLNKYGPAVSGLSAPGSAAAGSPAAEAKEAEKTVFDIKLEKFDAAAKIKIIKEV 120
           LFR KMGLNKYGPAVSGLSAPGSA+AGS +AEAKEAEKTVFDIKLEKFDAAAKIKIIKEV
Sbjct: 61  LFRLKMGLNKYGPAVSGLSAPGSASAGSASAEAKEAEKTVFDIKLEKFDAAAKIKIIKEV 120

Query: 121 RTFTDLGLKEAKDLVEKVPVVLKKGVTKDQGSPIIEKLKELGATAVLE 169
           RTFT+LGLKEAKDLVEKVPVVLKKGVTKDQG+PIIEKLKELGATAVLE
Sbjct: 121 RTFTELGLKEAKDLVEKVPVVLKKGVTKDQGNPIIEKLKELGATAVLE 168

[Close]
BLAST of PI0008804 vs. NCBI nr
Match: XP_023517705.1 (uncharacterized protein LOC111781380 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 282.0 bits (720), Expect = 3.5e-72
Identity = 156/168 (92.86%), Postives = 162/168 (96.43%), Query Frame = 0 

Query: 1   MPSIASKLPAKSLVRLLTVAPRSLLVRSLSTVAEERTQKLERIADELLGLTKIERHDYAI 60
           MPSIASKLPAK+L RLLTVAPR LLVRSLSTV+EERTQKLERIAD+LLGLTKIERHDYAI
Sbjct: 1   MPSIASKLPAKALGRLLTVAPRQLLVRSLSTVSEERTQKLERIADDLLGLTKIERHDYAI 60

Query: 61  LFRFKMGLNKYGPAVSGLSAPGSAAAGSPAAEAKEAEKTVFDIKLEKFDAAAKIKIIKEV 120
           LFR KMGLNKYGPAVSGLSA GSA+AGS +A AKEAEKTVFDIKLEKFDAAAKIKIIKEV
Sbjct: 61  LFRLKMGLNKYGPAVSGLSASGSASAGSASAVAKEAEKTVFDIKLEKFDAAAKIKIIKEV 120

Query: 121 RTFTDLGLKEAKDLVEKVPVVLKKGVTKDQGSPIIEKLKELGATAVLE 169
           RTFTDLGLKEAKDLVEKVPVVLKKGVTKDQG+PIIEKLKELGATAVLE
Sbjct: 121 RTFTDLGLKEAKDLVEKVPVVLKKGVTKDQGNPIIEKLKELGATAVLE 168

[Close]
BLAST of PI0008804 vs. TAIR 10
Match: AT4G37660.1 (Ribosomal protein L12/ ATP-dependent Clp protease adaptor protein ClpS family protein )

HSP 1 Score: 154.5 bits (389), Expect = 7.8e-38
Identity = 90/161 (55.90%), Postives = 114/161 (70.81%), Query Frame = 0 

Query: 10  AKSLVRLLTVAPRSLLVRSLSTVA--EERTQKLERIADELLGLTKIERHDYAILFRFKMG 69
           ++SL  L    P S   R L  VA  E RT+KLERIAD+LL L +IE +DY++LF  K+G
Sbjct: 10  SRSLGYLHRTTPLSSATRHLCAVASPEARTKKLERIADDLLKLNRIELYDYSLLFSHKIG 69

Query: 70  LNKYGPAVSGLSAPGSAAAGSPAAEAKEAEKTVFDIKLEKFDAAAKIKIIKEVRTFTDLG 129
           LN+YG AV   +  GS    S + E K AEKT FD+KLEKF+AA+KIK+IKE+R FTDLG
Sbjct: 70  LNRYGSAV---AVTGSVGDASASTETKTAEKTTFDVKLEKFEAASKIKVIKEIRAFTDLG 129

Query: 130 LKEAKDLVEKVPVVLKKGVTKDQGSPIIEKLKELGATAVLE 169
           LKEAK LVEK PV++K G+TK++   I+EKLK +GA   LE
Sbjct: 130 LKEAKALVEKAPVIVKNGLTKEEAEKIMEKLKAVGAIVALE 167

[Close]
BLAST of PI0008804 vs. TAIR 10
Match: AT1G70190.1 (Ribosomal protein L7/L12, oligomerisation;Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like )

HSP 1 Score: 110.2 bits (274), Expect = 1.7e-24
Identity = 66/142 (46.48%), Postives = 91/142 (64.08%), Query Frame = 0 

Query: 37  TQKLERIADELLGLTKIERHDYAILFRFKMGLNKYGPAVS----------GLSAPGSAAA 96
           T ++ R+ DE+  LT +E  +   +   K G+ +  P V+          G+   G   +
Sbjct: 68  TDRVFRLVDEISSLTLLEISELGSIIMKKKGMTEL-PTVAVMKPGAGGGVGVGGGGGMVS 127

Query: 97  GSPAAEAKEAEKTVFDIKLEKFDAAAKIKIIKEVRTFTDLGLKEAKDLVEKVPVVLKKGV 156
            S  +E  + EKTVF+IKLE F+A+AKIKIIKE+R+FTDLGLKEAK LVEK P +LK G+
Sbjct: 128 QSGVSEEAKVEKTVFEIKLESFEASAKIKIIKELRSFTDLGLKEAKALVEKTPAILKAGL 187

Query: 157 TKDQGSPIIEKLKELGATAVLE 169
           +K++G  I+EKLK LGA  VLE
Sbjct: 188 SKEEGEKILEKLKALGAKVVLE 208

[Close]
BLAST of PI0008804 vs. TAIR 10
Match: AT1G70190.2 (Ribosomal protein L7/L12, oligomerisation;Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like )

HSP 1 Score: 110.2 bits (274), Expect = 1.7e-24
Identity = 66/142 (46.48%), Postives = 91/142 (64.08%), Query Frame = 0 

Query: 37  TQKLERIADELLGLTKIERHDYAILFRFKMGLNKYGPAVS----------GLSAPGSAAA 96
           T ++ R+ DE+  LT +E  +   +   K G+ +  P V+          G+   G   +
Sbjct: 68  TDRVFRLVDEISSLTLLEISELGSIIMKKKGMTEL-PTVAVMKPGAGGGVGVGGGGGMVS 127

Query: 97  GSPAAEAKEAEKTVFDIKLEKFDAAAKIKIIKEVRTFTDLGLKEAKDLVEKVPVVLKKGV 156
            S  +E  + EKTVF+IKLE F+A+AKIKIIKE+R+FTDLGLKEAK LVEK P +LK G+
Sbjct: 128 QSGVSEEAKVEKTVFEIKLESFEASAKIKIIKELRSFTDLGLKEAKALVEKTPAILKAGL 187

Query: 157 TKDQGSPIIEKLKELGATAVLE 169
           +K++G  I+EKLK LGA  VLE
Sbjct: 188 SKEEGEKILEKLKALGAKVVLE 208

[Close]
BLAST of PI0008804 vs. TAIR 10
Match: AT4G36420.1 (Ribosomal protein L12 family protein )

HSP 1 Score: 110.2 bits (274), Expect = 1.7e-24
Identity = 70/163 (42.94%), Postives = 100/163 (61.35%), Query Frame = 0 

Query: 12  SLVRLLTVAPRSLLVRSLSTVAEERTQKLERIADELLGLTKIERHDYAILFRFKMGLNK- 71
           S V+L T+  RS       +    +++ + +I +EL  LT +E  D   + R K+ +++ 
Sbjct: 23  SSVQLFTIQSRSY------SSPATQSENVSKIVNELSNLTLLETMDLTEILRQKLNISEL 82

Query: 72  --YGPAVSGLSAPGSAAAGSPAAEAKEAE---KTVFDIKLEKFDAAAKIKIIKEVRTFTD 131
                 + G+S PGS A+ S   E KE +   KT FD+ L+ +DA +KIK+IKEVRT T 
Sbjct: 83  PVMAAMMPGMSLPGSGASKSAGGEGKEKKKEAKTAFDVMLQAYDAVSKIKVIKEVRTITA 142

Query: 132 LGLKEAKDLVEKVPVVLKKGVTKDQGSPIIEKLKELGATAVLE 169
           LGLKEAKDLVEK P +LKKGV+K++   IIEKLK +GA   +E
Sbjct: 143 LGLKEAKDLVEKAPTLLKKGVSKEEAEKIIEKLKAVGAKVAME 179

[Close]
BLAST of PI0008804 vs. TAIR 10
Match: AT3G06040.1 (Ribosomal protein L12/ ATP-dependent Clp protease adaptor protein ClpS family protein )

HSP 1 Score: 100.5 bits (249), Expect = 1.3e-21
Identity = 63/133 (47.37%), Postives = 86/133 (64.66%), Query Frame = 0 

Query: 37  TQKLERIADELLGLTKIERHDYAILFRFKMGLNKYGPAVS-GLSAPGSAAAGSPAAEAKE 96
           + K+  +A+ +  L+  ER          + L K     S G+ A     AG+   E K+
Sbjct: 57  SSKIMELAERIAALSPEERKQIGPALNEHLRLPKQQMISSDGIGAKQDTGAGN--VEEKK 116

Query: 97  AEKTVFDIKLEKFDAAAKIKIIKEVRTFTDLGLKEAKDLVEKVPVVLKKGVTKDQGSPII 156
            EKT FD+KLEKF+A+ KIK+IKEVRTFT LGLKEAK+LVEKVP +LK+GVTK++ + II
Sbjct: 117 -EKTAFDVKLEKFNASDKIKVIKEVRTFTSLGLKEAKELVEKVPAILKQGVTKEEANEII 176

Query: 157 EKLKELGATAVLE 169
            K+K +G  AV+E
Sbjct: 177 AKIKAVGGIAVME 186

The following BLAST results are available for this feature:
BLAST of PI0008804 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
P411891.1e-1541.4150S ribosomal protein L7/L12 OS=Liberibacter africanus OX=34020 GN=rplL PE=3 SV=... [more]
A9BDG41.2e-1437.8850S ribosomal protein L7/L12 OS=Prochlorococcus marinus (strain MIT 9211) OX=930... [more]
B6JER81.5e-1445.4550S ribosomal protein L7/L12 OS=Oligotropha carboxidovorans (strain ATCC 49405 /... [more]
P023982.0e-1438.3550S ribosomal protein L12, chloroplastic OS=Spinacia oleracea OX=3562 GN=RPL12 P... [more]
Q1MIF02.6e-1443.6550S ribosomal protein L7/L12 OS=Rhizobium leguminosarum bv. viciae (strain 3841)... [more]
BLAST of PI0008804 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KLI99.5e-7696.43Ribosomal_L12 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G4957... [more]
A0A5D3CQX43.1e-7494.6450S ribosomal protein L7/L12 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sca... [more]
A0A1S3B1133.1e-7494.6450S ribosomal protein L7/L12 OS=Cucumis melo OX=3656 GN=LOC103484859 PE=4 SV=1[more]
A0A6J1BTU02.6e-7392.86uncharacterized protein LOC111005295 OS=Momordica charantia OX=3673 GN=LOC111005... [more]
A0A6J1KLN22.2e-7291.07uncharacterized protein LOC111496860 OS=Cucurbita maxima OX=3661 GN=LOC111496860... [more]
BLAST of PI0008804 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_004141864.12.0e-7596.43uncharacterized protein LOC101203973 [Cucumis sativus] >KGN48616.1 hypothetical ... [more]
XP_038882677.14.8e-7494.6450S ribosomal protein L7/L12 [Benincasa hispida][more]
XP_008440399.16.3e-7494.64PREDICTED: 50S ribosomal protein L7/L12 [Cucumis melo] >KAA0036410.1 50S ribosom... [more]
XP_022132437.15.4e-7392.86uncharacterized protein LOC111005295 [Momordica charantia][more]
XP_023517705.13.5e-7292.86uncharacterized protein LOC111781380 [Cucurbita pepo subsp. pepo][more]
BLAST of PI0008804 vs. TAIR 10
Match NameE-valueIdentityDescription
AT4G37660.17.8e-3855.90Ribosomal protein L12/ ATP-dependent Clp protease adaptor protein ClpS family pr... [more]
AT1G70190.11.7e-2446.48Ribosomal protein L7/L12, oligomerisation;Ribosomal protein L7/L12, C-terminal/a... [more]
AT1G70190.21.7e-2446.48Ribosomal protein L7/L12, oligomerisation;Ribosomal protein L7/L12, C-terminal/a... [more]
AT4G36420.11.7e-2442.94Ribosomal protein L12 family protein [more]
AT3G06040.11.3e-2147.37Ribosomal protein L12/ ATP-dependent Clp protease adaptor protein ClpS family pr... [more]
InterPro
Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013823Ribosomal protein L7/L12, C-terminalPFAMPF00542Ribosomal_L12coord: 101..167
e-value: 2.1E-20
score: 72.9
IPR014719Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-likeGENE3D3.30.1390.10coord: 91..167
e-value: 1.6E-20
score: 75.0
IPR014719Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-likeSUPERFAMILY54736ClpS-likecoord: 97..167
IPR000206Ribosomal protein L7/L12PANTHERPTHR4598739S RIBOSOMAL PROTEIN L12coord: 3..168
IPR000206Ribosomal protein L7/L12CDDcd00387Ribosomal_L7_L12coord: 39..167
e-value: 8.23185E-32
score: 108.782
NoneNo IPR availablePANTHERPTHR45987:SF1150S RIBOSOMAL PROTEIN L7/L12coord: 3..168

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
PI0008804.1PI0008804.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006412 translation
cellular_component GO:0005840 ribosome
molecular_function GO:0003735 structural constituent of ribosome