PI0006980 (gene) Melon (PI 482460) v1

Overview
NamePI0006980
Typegene
OrganismCucumis metuliferus (Melon (PI 482460) v1)
DescriptionRetrotransposon protein
Locationchr03: 20029315 .. 20029518 (-)
RNA-Seq ExpressionPI0006980
SyntenyPI0006980
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTTGTTGTCTACTACACAACCTCATCAACAGGGAGATGACTAACACTGAAATGTCGAAGGATTACGACGAGGGTGATTCGACATACGCCACGACTGTCAATGACGACATTCATTATATTGAGACCTCAAACAAATGGAGTCAGTGGAGGGATGCTCTAGCCGAAGAAATGTTCAGCAAATGGGAGTTGCGTAATCAGTAA

mRNA sequence

ATGGCTTGTTGTCTACTACACAACCTCATCAACAGGGAGATGACTAACACTGAAATGTCGAAGGATTACGACGAGGGTGATTCGACATACGCCACGACTGTCAATGACGACATTCATTATATTGAGACCTCAAACAAATGGAGTCAGTGGAGGGATGCTCTAGCCGAAGAAATGTTCAGCAAATGGGAGTTGCGTAATCAGTAA

Coding sequence (CDS)

ATGGCTTGTTGTCTACTACACAACCTCATCAACAGGGAGATGACTAACACTGAAATGTCGAAGGATTACGACGAGGGTGATTCGACATACGCCACGACTGTCAATGACGACATTCATTATATTGAGACCTCAAACAAATGGAGTCAGTGGAGGGATGCTCTAGCCGAAGAAATGTTCAGCAAATGGGAGTTGCGTAATCAGTAA

Protein sequence

MACCLLHNLINREMTNTEMSKDYDEGDSTYATTVNDDIHYIETSNKWSQWRDALAEEMFSKWELRNQ
Homology
[Close]
BLAST of PI0006980 vs. ExPASy TrEMBL
Match: A0A5A7VCK9 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold538G00700 PE=3 SV=1)

HSP 1 Score: 113.2 bits (282), Expect = 4.1e-22
Identity = 52/67 (77.61%), Postives = 60/67 (89.55%), Query Frame = 0 

Query: 1   MACCLLHNLINREMTNTEMSKDYDEGDSTYATTVNDDIHYIETSNKWSQWRDALAEEMFS 60
           +ACCLLHNLINREMTN ++  + DE DST+ATTV DDIHYIETSN+WSQWRD LAEEMF+
Sbjct: 322 LACCLLHNLINREMTNFDIEDNIDEVDSTHATTVADDIHYIETSNEWSQWRDDLAEEMFT 381

Query: 61  KWELRNQ 68
           +WELRNQ
Sbjct: 382 EWELRNQ 388

[Close]
BLAST of PI0006980 vs. ExPASy TrEMBL
Match: A0A5D3DV38 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold236G00230 PE=3 SV=1)

HSP 1 Score: 112.8 bits (281), Expect = 5.4e-22
Identity = 52/67 (77.61%), Postives = 59/67 (88.06%), Query Frame = 0 

Query: 1   MACCLLHNLINREMTNTEMSKDYDEGDSTYATTVNDDIHYIETSNKWSQWRDALAEEMFS 60
           +ACCLLHNLINREMTN ++  + DE DST+ATT  DDIHYIETSN+WSQWRD LAEEMFS
Sbjct: 196 LACCLLHNLINREMTNFDIQDNIDEVDSTHATTTADDIHYIETSNEWSQWRDDLAEEMFS 255

Query: 61  KWELRNQ 68
           +WELRNQ
Sbjct: 256 EWELRNQ 262

[Close]
BLAST of PI0006980 vs. ExPASy TrEMBL
Match: A0A5A7U2U5 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold61G002280 PE=3 SV=1)

HSP 1 Score: 112.8 bits (281), Expect = 5.4e-22
Identity = 52/67 (77.61%), Postives = 59/67 (88.06%), Query Frame = 0 

Query: 1   MACCLLHNLINREMTNTEMSKDYDEGDSTYATTVNDDIHYIETSNKWSQWRDALAEEMFS 60
           +ACCLLHNLINREMTN ++  + DE DST+ATT  DDIHYIETSN+WSQWRD LAEEMFS
Sbjct: 218 LACCLLHNLINREMTNFDIQDNIDEVDSTHATTTADDIHYIETSNEWSQWRDDLAEEMFS 277

Query: 61  KWELRNQ 68
           +WELRNQ
Sbjct: 278 EWELRNQ 284

[Close]
BLAST of PI0006980 vs. ExPASy TrEMBL
Match: A0A5D3BL48 (Putative nuclease HARBI1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold562G00970 PE=4 SV=1)

HSP 1 Score: 112.1 bits (279), Expect = 9.2e-22
Identity = 52/67 (77.61%), Postives = 58/67 (86.57%), Query Frame = 0 

Query: 1   MACCLLHNLINREMTNTEMSKDYDEGDSTYATTVNDDIHYIETSNKWSQWRDALAEEMFS 60
           +ACCLLHNLINREMTN ++  + DE DST+ATT  DDIHYIETSN+WSQWRD LAEEMFS
Sbjct: 148 LACCLLHNLINREMTNFDIEDNIDEVDSTHATTTADDIHYIETSNEWSQWRDDLAEEMFS 207

Query: 61  KWELRNQ 68
            WELRNQ
Sbjct: 208 DWELRNQ 214

[Close]
BLAST of PI0006980 vs. ExPASy TrEMBL
Match: A0A5A7VJX3 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold40G001490 PE=3 SV=1)

HSP 1 Score: 112.1 bits (279), Expect = 9.2e-22
Identity = 52/67 (77.61%), Postives = 58/67 (86.57%), Query Frame = 0 

Query: 1   MACCLLHNLINREMTNTEMSKDYDEGDSTYATTVNDDIHYIETSNKWSQWRDALAEEMFS 60
           +ACCLLHNLINREMTN ++  + DE DST+ATT  DDIHYIETSN+WSQWRD LAEEMFS
Sbjct: 241 LACCLLHNLINREMTNFDIEDNIDEVDSTHATTTADDIHYIETSNEWSQWRDDLAEEMFS 300

Query: 61  KWELRNQ 68
            WELRNQ
Sbjct: 301 DWELRNQ 307

[Close]
BLAST of PI0006980 vs. NCBI nr
Match: KAA0065893.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 113.2 bits (282), Expect = 8.5e-22
Identity = 52/67 (77.61%), Postives = 60/67 (89.55%), Query Frame = 0 

Query: 1   MACCLLHNLINREMTNTEMSKDYDEGDSTYATTVNDDIHYIETSNKWSQWRDALAEEMFS 60
           +ACCLLHNLINREMTN ++  + DE DST+ATTV DDIHYIETSN+WSQWRD LAEEMF+
Sbjct: 322 LACCLLHNLINREMTNFDIEDNIDEVDSTHATTVADDIHYIETSNEWSQWRDDLAEEMFT 381

Query: 61  KWELRNQ 68
           +WELRNQ
Sbjct: 382 EWELRNQ 388

[Close]
BLAST of PI0006980 vs. NCBI nr
Match: TYK27175.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 112.8 bits (281), Expect = 1.1e-21
Identity = 52/67 (77.61%), Postives = 59/67 (88.06%), Query Frame = 0 

Query: 1   MACCLLHNLINREMTNTEMSKDYDEGDSTYATTVNDDIHYIETSNKWSQWRDALAEEMFS 60
           +ACCLLHNLINREMTN ++  + DE DST+ATT  DDIHYIETSN+WSQWRD LAEEMFS
Sbjct: 196 LACCLLHNLINREMTNFDIQDNIDEVDSTHATTTADDIHYIETSNEWSQWRDDLAEEMFS 255

Query: 61  KWELRNQ 68
           +WELRNQ
Sbjct: 256 EWELRNQ 262

[Close]
BLAST of PI0006980 vs. NCBI nr
Match: KAA0048587.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 112.8 bits (281), Expect = 1.1e-21
Identity = 52/67 (77.61%), Postives = 59/67 (88.06%), Query Frame = 0 

Query: 1   MACCLLHNLINREMTNTEMSKDYDEGDSTYATTVNDDIHYIETSNKWSQWRDALAEEMFS 60
           +ACCLLHNLINREMTN ++  + DE DST+ATT  DDIHYIETSN+WSQWRD LAEEMFS
Sbjct: 218 LACCLLHNLINREMTNFDIQDNIDEVDSTHATTTADDIHYIETSNEWSQWRDDLAEEMFS 277

Query: 61  KWELRNQ 68
           +WELRNQ
Sbjct: 278 EWELRNQ 284

[Close]
BLAST of PI0006980 vs. NCBI nr
Match: KAA0067470.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 112.1 bits (279), Expect = 1.9e-21
Identity = 52/67 (77.61%), Postives = 58/67 (86.57%), Query Frame = 0 

Query: 1   MACCLLHNLINREMTNTEMSKDYDEGDSTYATTVNDDIHYIETSNKWSQWRDALAEEMFS 60
           +ACCLLHNLINREMTN ++  + DE DST+ATT  DDIHYIETSN+WSQWRD LAEEMFS
Sbjct: 241 LACCLLHNLINREMTNFDIEDNIDEVDSTHATTTADDIHYIETSNEWSQWRDDLAEEMFS 300

Query: 61  KWELRNQ 68
            WELRNQ
Sbjct: 301 DWELRNQ 307

[Close]
BLAST of PI0006980 vs. NCBI nr
Match: TYJ99699.1 (putative nuclease HARBI1 [Cucumis melo var. makuwa])

HSP 1 Score: 112.1 bits (279), Expect = 1.9e-21
Identity = 52/67 (77.61%), Postives = 58/67 (86.57%), Query Frame = 0 

Query: 1   MACCLLHNLINREMTNTEMSKDYDEGDSTYATTVNDDIHYIETSNKWSQWRDALAEEMFS 60
           +ACCLLHNLINREMTN ++  + DE DST+ATT  DDIHYIETSN+WSQWRD LAEEMFS
Sbjct: 148 LACCLLHNLINREMTNFDIEDNIDEVDSTHATTTADDIHYIETSNEWSQWRDDLAEEMFS 207

Query: 61  KWELRNQ 68
            WELRNQ
Sbjct: 208 DWELRNQ 214

The following BLAST results are available for this feature:
BLAST of PI0006980 vs.
Match NameE-valueIdentityDescription
BLAST of PI0006980 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7VCK94.1e-2277.61Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A5D3DV385.4e-2277.61Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5A7U2U55.4e-2277.61Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A5D3BL489.2e-2277.61Putative nuclease HARBI1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffol... [more]
A0A5A7VJX39.2e-2277.61Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
BLAST of PI0006980 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0065893.18.5e-2277.61retrotransposon protein [Cucumis melo var. makuwa][more]
TYK27175.11.1e-2177.61retrotransposon protein [Cucumis melo var. makuwa][more]
KAA0048587.11.1e-2177.61retrotransposon protein [Cucumis melo var. makuwa][more]
KAA0067470.11.9e-2177.61retrotransposon protein [Cucumis melo var. makuwa][more]
TYJ99699.11.9e-2177.61putative nuclease HARBI1 [Cucumis melo var. makuwa][more]
BLAST of PI0006980 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
PI0006980.1PI0006980.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0046872 metal ion binding