PI0006969 (gene) Melon (PI 482460) v1

Overview


Name	PI0006969
Type	gene
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	BHLH domain-containing protein
Location	chr12: 2386625 .. 2386944 (-)
RNA-Seq Expression	PI0006969
Synteny	PI0006969

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCTCATTAGTAGCCTCGATAGAAGCTTCATGCTCCACCAAATTATTAGTGTCATCGAAGAGGAAGGTGGCGAAGTCGTCAACGCTAGCTTATCCACAATCGGTAACAAAGTCTTTCACTCACTCCACATCGAAGTAAGTAATAACAGTCTACAAAACGCTCCAAAAATCATTCCAGACAAACTTTAATTAAGAAAACATGTTTCAGTTTCTTATTCACGTTTTCTTAATTTTTGCAGGCTAAGATTTCGAGAGTTGGAATAGAGACATCAAGAGTAGAACAACGGTTGGTGAATTTGGCATACCAAAAACAAAACTAA

mRNA sequence

ATGCTCATTAGTAGCCTCGATAGAAGCTTCATGCTCCACCAAATTATTAGTGTCATCGAAGAGGAAGGTGGCGAAGTCGTCAACGCTAGCTTATCCACAATCGGTAACAAAGTCTTTCACTCACTCCACATCGAAGCTAAGATTTCGAGAGTTGGAATAGAGACATCAAGAGTAGAACAACGGTTGGTGAATTTGGCATACCAAAAACAAAACTAA

Coding sequence (CDS)

ATGCTCATTAGTAGCCTCGATAGAAGCTTCATGCTCCACCAAATTATTAGTGTCATCGAAGAGGAAGGTGGCGAAGTCGTCAACGCTAGCTTATCCACAATCGGTAACAAAGTCTTTCACTCACTCCACATCGAAGCTAAGATTTCGAGAGTTGGAATAGAGACATCAAGAGTAGAACAACGGTTGGTGAATTTGGCATACCAAAAACAAAACTAA

Protein sequence

MLISSLDRSFMLHQIISVIEEEGGEVVNASLSTIGNKVFHSLHIEAKISRVGIETSRVEQRLVNLAYQKQN

Homology

[Close]

BLAST of PI0006969 vs. ExPASy Swiss-Prot
Match: Q9XIJ1 (Transcription factor bHLH168 OS=Arabidopsis thaliana OX=3702 GN=BHLH168 PE=3 SV=1)

HSP 1 Score: 55.8 bits (133), Expect = 2.2e-07
Identity = 23/55 (41.82%), Postives = 42/55 (76.36%), Query Frame = 0


Query: 8   RSFMLHQIISVIEEEGGEVVNASLSTIGNKVFHSLHIEAKISRVGIETSRVEQRL 63
           +  MLH+++SV EEEG +V++A+L  + ++ F+++  +A I R+GI+ SR+E+RL
Sbjct: 115 KGVMLHKLVSVFEEEGAQVMSANLQNLNDRTFYTIIAQAIICRIGIDPSRIEERL 169

[Close]

BLAST of PI0006969 vs. ExPASy Swiss-Prot
Match: F4I4E1 (Transcription factor bHLH167 OS=Arabidopsis thaliana OX=3702 GN=BHLH167 PE=2 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 5.0e-07
Identity = 22/57 (38.60%), Postives = 43/57 (75.44%), Query Frame = 0


Query: 11  MLHQIISVIEEEGGEVVNASLSTIGNKVFHSLHIEAKISRVGIETSRVEQRLVNLAY 68
           MLH+++S+ EEEG +V++A+L  + ++  +++  +A ISR+GI+ SR+E+R+  + Y
Sbjct: 118 MLHELVSIFEEEGAQVMSANLQNLNDRTTYTIIAQAIISRIGIDPSRIEERVRKIIY 174

[Close]

BLAST of PI0006969 vs. ExPASy TrEMBL
Match: A0A1S3AW43 (uncharacterized protein LOC103483440 OS=Cucumis melo OX=3656 GN=LOC103483440 PE=4 SV=1)

HSP 1 Score: 120.2 bits (300), Expect = 3.6e-24
Identity = 61/71 (85.92%), Postives = 68/71 (95.77%), Query Frame = 0


Query: 1   MLISSLDRSFMLHQIISVIEEEGGEVVNASLSTIGNKVFHSLHIEAKISRVGIETSRVEQ 60
           MLISS++RSFMLHQIISVIEEEGG+VVNA LSTIGNKVFHSLHIEAKISR+GIETSRV++
Sbjct: 120 MLISSVNRSFMLHQIISVIEEEGGQVVNAGLSTIGNKVFHSLHIEAKISRIGIETSRVKR 179

Query: 61  RLVNLAYQKQN 72
           RLVNL YQ Q+
Sbjct: 180 RLVNLVYQNQH 190

[Close]

BLAST of PI0006969 vs. ExPASy TrEMBL
Match: A0A5D3BHA0 (Transcription factor bHLH100-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold248G003570 PE=4 SV=1)

HSP 1 Score: 105.9 bits (263), Expect = 7.0e-20
Identity = 53/61 (86.89%), Postives = 58/61 (95.08%), Query Frame = 0


Query: 11 MLHQIISVIEEEGGEVVNASLSTIGNKVFHSLHIEAKISRVGIETSRVEQRLVNLAYQKQ 70
          MLHQIISVIEEEGG+VVNA LSTIGNKVFHSLHIEAKISR+GIETSRV++RLVNL YQ Q
Sbjct: 1  MLHQIISVIEEEGGQVVNAGLSTIGNKVFHSLHIEAKISRIGIETSRVKRRLVNLVYQNQ 60

Query: 71 N 72
          +
Sbjct: 61 H 61

[Close]

BLAST of PI0006969 vs. ExPASy TrEMBL
Match: A0A6J1GQZ4 (transcription factor bHLH168-like OS=Cucurbita moschata OX=3662 GN=LOC111456691 PE=4 SV=1)

HSP 1 Score: 98.2 bits (243), Expect = 1.5e-17
Identity = 50/64 (78.12%), Postives = 60/64 (93.75%), Query Frame = 0


Query: 2   LISSLDRSFMLHQIISVIEEEGGEVVNASLSTIGNKVFHSLHIEAKISRVGIETSRVEQR 61
           LISS+DR+ ML++II V+EEEGGEVV+AS ST+G+KVFHSLHIEAKISRVGIETSRVE+R
Sbjct: 113 LISSVDRNVMLNEIIGVVEEEGGEVVSASFSTLGDKVFHSLHIEAKISRVGIETSRVEKR 172

Query: 62  LVNL 66
           L +L
Sbjct: 173 LKHL 176

[Close]

BLAST of PI0006969 vs. ExPASy TrEMBL
Match: A0A6J1JY79 (transcription factor bHLH168-like OS=Cucurbita maxima OX=3661 GN=LOC111489950 PE=4 SV=1)

HSP 1 Score: 96.3 bits (238), Expect = 5.5e-17
Identity = 49/64 (76.56%), Postives = 59/64 (92.19%), Query Frame = 0


Query: 2   LISSLDRSFMLHQIISVIEEEGGEVVNASLSTIGNKVFHSLHIEAKISRVGIETSRVEQR 61
           LISS+ R+ ML++II VIEEEGGEVV+AS ST+G+K+FHSLHIEAKISRVGIETSR+E+R
Sbjct: 142 LISSVHRNVMLNEIIVVIEEEGGEVVSASFSTLGDKIFHSLHIEAKISRVGIETSRIEKR 201

Query: 62  LVNL 66
           L NL
Sbjct: 202 LENL 205

[Close]

BLAST of PI0006969 vs. ExPASy TrEMBL
Match: A0A438EYP0 (Transcription factor bHLH167 OS=Vitis vinifera OX=29760 GN=BHLH167_4 PE=4 SV=1)

HSP 1 Score: 94.4 bits (233), Expect = 2.1e-16
Identity = 46/67 (68.66%), Postives = 59/67 (88.06%), Query Frame = 0


Query: 1   MLISSLDRSFMLHQIISVIEEEGGEVVNASLSTIGNKVFHSLHIEAKISRVGIETSRVEQ 60
           MLIS L+++FML+++ISV+EEEG EVV+AS+ST+G+KVFHSLH + KISRVG+ETSRV Q
Sbjct: 82  MLISGLNKNFMLYEVISVLEEEGAEVVSASVSTVGDKVFHSLHAQVKISRVGVETSRVWQ 141

Query: 61  RLVNLAY 68
           RL  L Y
Sbjct: 142 RLQELIY 148

[Close]

BLAST of PI0006969 vs. NCBI nr
Match: XP_031737508.1 (transcription factor bHLH162-like [Cucumis sativus])

HSP 1 Score: 121.7 bits (304), Expect = 2.5e-24
Identity = 62/71 (87.32%), Postives = 69/71 (97.18%), Query Frame = 0


Query: 1   MLISSLDRSFMLHQIISVIEEEGGEVVNASLSTIGNKVFHSLHIEAKISRVGIETSRVEQ 60
           +LISSL+RSF LHQIISVIEEEGG+VVNASLSTIGNKVFHSLHIEAKISR+GIETSRV++
Sbjct: 162 VLISSLNRSFTLHQIISVIEEEGGQVVNASLSTIGNKVFHSLHIEAKISRIGIETSRVKR 221

Query: 61  RLVNLAYQKQN 72
           RL+NL YQKQN
Sbjct: 222 RLMNLVYQKQN 232

[Close]

BLAST of PI0006969 vs. NCBI nr
Match: XP_008438283.1 (PREDICTED: uncharacterized protein LOC103483440 [Cucumis melo])

HSP 1 Score: 120.2 bits (300), Expect = 7.4e-24
Identity = 61/71 (85.92%), Postives = 68/71 (95.77%), Query Frame = 0


Query: 1   MLISSLDRSFMLHQIISVIEEEGGEVVNASLSTIGNKVFHSLHIEAKISRVGIETSRVEQ 60
           MLISS++RSFMLHQIISVIEEEGG+VVNA LSTIGNKVFHSLHIEAKISR+GIETSRV++
Sbjct: 120 MLISSVNRSFMLHQIISVIEEEGGQVVNAGLSTIGNKVFHSLHIEAKISRIGIETSRVKR 179

Query: 61  RLVNLAYQKQN 72
           RLVNL YQ Q+
Sbjct: 180 RLVNLVYQNQH 190

[Close]

BLAST of PI0006969 vs. NCBI nr
Match: XP_038893831.1 (transcription factor bHLH168-like [Benincasa hispida])

HSP 1 Score: 109.4 bits (272), Expect = 1.3e-20
Identity = 53/68 (77.94%), Postives = 63/68 (92.65%), Query Frame = 0


Query: 1  MLISSLDRSFMLHQIISVIEEEGGEVVNASLSTIGNKVFHSLHIEAKISRVGIETSRVEQ 60
          MLISS +RSFMLHQ+ISVIEEEGG+ VNASLS +GNK+FH LHIEAKI+RVG+ETSRV+Q
Sbjct: 26 MLISSSNRSFMLHQVISVIEEEGGQAVNASLSMVGNKIFHFLHIEAKIARVGVETSRVQQ 85

Query: 61 RLVNLAYQ 69
          RL+NL Y+
Sbjct: 86 RLLNLVYR 93

[Close]

BLAST of PI0006969 vs. NCBI nr
Match: TYJ99150.1 (transcription factor bHLH100-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 105.9 bits (263), Expect = 1.4e-19
Identity = 53/61 (86.89%), Postives = 58/61 (95.08%), Query Frame = 0


Query: 11 MLHQIISVIEEEGGEVVNASLSTIGNKVFHSLHIEAKISRVGIETSRVEQRLVNLAYQKQ 70
          MLHQIISVIEEEGG+VVNA LSTIGNKVFHSLHIEAKISR+GIETSRV++RLVNL YQ Q
Sbjct: 1  MLHQIISVIEEEGGQVVNAGLSTIGNKVFHSLHIEAKISRIGIETSRVKRRLVNLVYQNQ 60

Query: 71 N 72
          +
Sbjct: 61 H 61

[Close]

BLAST of PI0006969 vs. NCBI nr
Match: XP_022954432.1 (transcription factor bHLH168-like [Cucurbita moschata])

HSP 1 Score: 98.2 bits (243), Expect = 3.0e-17
Identity = 50/64 (78.12%), Postives = 60/64 (93.75%), Query Frame = 0


Query: 2   LISSLDRSFMLHQIISVIEEEGGEVVNASLSTIGNKVFHSLHIEAKISRVGIETSRVEQR 61
           LISS+DR+ ML++II V+EEEGGEVV+AS ST+G+KVFHSLHIEAKISRVGIETSRVE+R
Sbjct: 113 LISSVDRNVMLNEIIGVVEEEGGEVVSASFSTLGDKVFHSLHIEAKISRVGIETSRVEKR 172

Query: 62  LVNL 66
           L +L
Sbjct: 173 LKHL 176

[Close]

BLAST of PI0006969 vs. TAIR 10
Match: AT1G10586.1 (basic helix-loop-helix (bHLH) DNA-binding superfamily protein )

HSP 1 Score: 55.8 bits (133), Expect = 1.6e-08
Identity = 23/55 (41.82%), Postives = 42/55 (76.36%), Query Frame = 0


Query: 8   RSFMLHQIISVIEEEGGEVVNASLSTIGNKVFHSLHIEAKISRVGIETSRVEQRL 63
           +  MLH+++SV EEEG +V++A+L  + ++ F+++  +A I R+GI+ SR+E+RL
Sbjct: 115 KGVMLHKLVSVFEEEGAQVMSANLQNLNDRTFYTIIAQAIICRIGIDPSRIEERL 169

[Close]

BLAST of PI0006969 vs. TAIR 10
Match: AT1G10586.2 (basic helix-loop-helix (bHLH) DNA-binding superfamily protein )

HSP 1 Score: 55.8 bits (133), Expect = 1.6e-08
Identity = 23/55 (41.82%), Postives = 42/55 (76.36%), Query Frame = 0


Query: 8   RSFMLHQIISVIEEEGGEVVNASLSTIGNKVFHSLHIEAKISRVGIETSRVEQRL 63
           +  MLH+++SV EEEG +V++A+L  + ++ F+++  +A I R+GI+ SR+E+RL
Sbjct: 74  KGVMLHKLVSVFEEEGAQVMSANLQNLNDRTFYTIIAQAIICRIGIDPSRIEERL 128

[Close]

BLAST of PI0006969 vs. TAIR 10
Match: AT1G10585.1 (basic helix-loop-helix (bHLH) DNA-binding superfamily protein )

HSP 1 Score: 54.7 bits (130), Expect = 3.6e-08
Identity = 22/57 (38.60%), Postives = 43/57 (75.44%), Query Frame = 0


Query: 11  MLHQIISVIEEEGGEVVNASLSTIGNKVFHSLHIEAKISRVGIETSRVEQRLVNLAY 68
           MLH+++S+ EEEG +V++A+L  + ++  +++  +A ISR+GI+ SR+E+R+  + Y
Sbjct: 118 MLHELVSIFEEEGAQVMSANLQNLNDRTTYTIIAQAIISRIGIDPSRIEERVRKIIY 174

[Close]

BLAST of PI0006969 vs. TAIR 10
Match: AT4G20970.1 (basic helix-loop-helix (bHLH) DNA-binding superfamily protein )

HSP 1 Score: 40.4 bits (93), Expect = 6.9e-04
Identity = 23/62 (37.10%), Postives = 38/62 (61.29%), Query Frame = 0


Query: 2   LISSLDRSFMLHQIISVIEEE-GGEVVNASLSTIGNKVFHSLHIEAKISRVGIETSRVEQ 61
           L++SL+  FM  +II V+ EE G E+ +A  S + + VFH+LH + +    G   S++ +
Sbjct: 122 LVTSLEHKFMFCEIIRVLTEELGAEITHAGYSIVDDAVFHTLHCKVEEHDYGAR-SQIPE 181

Query: 62  RL 63
           RL
Sbjct: 182 RL 182

The following BLAST results are available for this feature:

BLAST of PI0006969 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9XIJ1	2.2e-07	41.82	Transcription factor bHLH168 OS=Arabidopsis thaliana OX=3702 GN=BHLH168 PE=3 SV=...	[more]
F4I4E1	5.0e-07	38.60	Transcription factor bHLH167 OS=Arabidopsis thaliana OX=3702 GN=BHLH167 PE=2 SV=...	[more]

BLAST of PI0006969 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3AW43	3.6e-24	85.92	uncharacterized protein LOC103483440 OS=Cucumis melo OX=3656 GN=LOC103483440 PE=...	[more]
A0A5D3BHA0	7.0e-20	86.89	Transcription factor bHLH100-like protein OS=Cucumis melo var. makuwa OX=1194695...	[more]
A0A6J1GQZ4	1.5e-17	78.13	transcription factor bHLH168-like OS=Cucurbita moschata OX=3662 GN=LOC111456691 ...	[more]
A0A6J1JY79	5.5e-17	76.56	transcription factor bHLH168-like OS=Cucurbita maxima OX=3661 GN=LOC111489950 PE...	[more]
A0A438EYP0	2.1e-16	68.66	Transcription factor bHLH167 OS=Vitis vinifera OX=29760 GN=BHLH167_4 PE=4 SV=1	[more]

BLAST of PI0006969 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_031737508.1	2.5e-24	87.32	transcription factor bHLH162-like [Cucumis sativus]	[more]
XP_008438283.1	7.4e-24	85.92	PREDICTED: uncharacterized protein LOC103483440 [Cucumis melo]	[more]
XP_038893831.1	1.3e-20	77.94	transcription factor bHLH168-like [Benincasa hispida]	[more]
TYJ99150.1	1.4e-19	86.89	transcription factor bHLH100-like protein [Cucumis melo var. makuwa]	[more]
XP_022954432.1	3.0e-17	78.13	transcription factor bHLH168-like [Cucurbita moschata]	[more]

BLAST of PI0006969 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G10586.1	1.6e-08	41.82	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	[more]
AT1G10586.2	1.6e-08	41.82	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	[more]
AT1G10585.1	3.6e-08	38.60	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	[more]
AT4G20970.1	6.9e-04	37.10	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR015660	Achaete-scute transcription factor-related	PANTHER	PTHR13935	ACHAETE-SCUTE TRANSCRIPTION FACTOR-RELATED	coord: 2..64
None	No IPR available	PANTHER	PTHR13935:SF52	OS01G0108400 PROTEIN	coord: 2..64

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
PI0006969.1	PI0006969.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:2000112	regulation of cellular macromolecule biosynthetic process
biological_process	GO:0006357	regulation of transcription by RNA polymerase II
cellular_component	GO:0090575	RNA polymerase II transcription regulator complex
molecular_function	GO:0000981	DNA-binding transcription factor activity, RNA polymerase II-specific
molecular_function	GO:0046983	protein dimerization activity
molecular_function	GO:0000977	RNA polymerase II transcription regulatory region sequence-specific DNA binding
molecular_function	GO:0003700	DNA-binding transcription factor activity