PI0006907 (gene) Melon (PI 482460) v1

Overview
NamePI0006907
Typegene
OrganismCucumis metuliferus (Melon (PI 482460) v1)
DescriptionGlial fibrillary acidic protein-like
Locationchr09: 7364094 .. 7364321 (+)
RNA-Seq ExpressionPI0006907
SyntenyPI0006907
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGGACGAGTATGGCATACTGAGACGCAAATATGATGGTGCTAGAGGTCAGATAGAGCAAGGGGGTGAGAAATTAAGACAAATGGCAAGGATAGCAGATCAATTTTCAGTGCAAGTTATGACCCTCCGATAAGGCATTGTACCCATACATGACAGCAACAGAGAATTGTCTCGTTCTCTATGGATCATAGGACAATACCTTGGGCATTTTGAATGCTACCATTAG

mRNA sequence

ATGGAGGACGAGTATGGCATACTGAGACGCAAATATGATGGTGCTAGAGGTCAGATAGAGCAAGGGGGTGAGAAATTAAGACAAATGGCAAGGATAGCAGATCAATTTTCAGTCAACAGAGAATTGTCTCGTTCTCTATGGATCATAGGACAATACCTTGGGCATTTTGAATGCTACCATTAG

Coding sequence (CDS)

ATGGAGGACGAGTATGGCATACTGAGACGCAAATATGATGGTGCTAGAGGTCAGATAGAGCAAGGGGGTGAGAAATTAAGACAAATGGCAAGGATAGCAGATCAATTTTCAGTCAACAGAGAATTGTCTCGTTCTCTATGGATCATAGGACAATACCTTGGGCATTTTGAATGCTACCATTAG

Protein sequence

MEDEYGILRRKYDGARGQIEQGGEKLRQMARIADQFSVNRELSRSLWIIGQYLGHFECYH
Homology
BLAST of PI0006907 vs. ExPASy TrEMBL
Match: A0A5A7TXA1 (Glial fibrillary acidic protein-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold114G001520 PE=4 SV=1)

HSP 1 Score: 74.7 bits (182), Expect = 1.5e-10
Identity = 41/74 (55.41%), Postives = 48/74 (64.86%), Query Frame = 0

Query: 2   EDEYGILRRKYDGARGQIEQGGEKLRQMARIADQFSV---------------NRELSRSL 61
           +DEY  LRRKYD A G++E+G EKLRQMAR+ADQFSV               ++ELS  L
Sbjct: 392 KDEYETLRRKYDDAIGRMERGAEKLRQMARVADQFSVQARTLRQGVIPTRDTDKELSHFL 451

BLAST of PI0006907 vs. ExPASy TrEMBL
Match: A0A5A7VDD9 (Glial fibrillary acidic protein-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold1023G00070 PE=4 SV=1)

HSP 1 Score: 73.9 bits (180), Expect = 2.5e-10
Identity = 41/74 (55.41%), Postives = 48/74 (64.86%), Query Frame = 0

Query: 2   EDEYGILRRKYDGARGQIEQGGEKLRQMARIADQFSV---------------NRELSRSL 61
           +DEY  LRRKYD A G++E+G EKLRQMAR+ADQFSV               ++ELS  L
Sbjct: 181 KDEYETLRRKYDDAIGRMERGAEKLRQMARVADQFSVQARTLRQGVIPTRDTDKELSHFL 240

BLAST of PI0006907 vs. ExPASy TrEMBL
Match: A0A5D3BQ93 (Glial fibrillary acidic protein-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold49G00080 PE=4 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 7.2e-10
Identity = 40/73 (54.79%), Postives = 45/73 (61.64%), Query Frame = 0

Query: 3   DEYGILRRKYDGARGQIEQGGEKLRQMARIADQFSV---------------NRELSRSLW 61
           DEY I+R KY+  +GQIEQG +KLR MAR ADQFS                +RELSR L 
Sbjct: 175 DEYNIMRHKYEDVKGQIEQGPKKLRHMARKADQFSTRTIALQQDIVPIQRGSRELSRFLG 234

BLAST of PI0006907 vs. ExPASy TrEMBL
Match: A0A5D3DUN1 (Glial fibrillary acidic protein-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold17837G00010 PE=4 SV=1)

HSP 1 Score: 71.6 bits (174), Expect = 1.2e-09
Identity = 40/74 (54.05%), Postives = 47/74 (63.51%), Query Frame = 0

Query: 2   EDEYGILRRKYDGARGQIEQGGEKLRQMARIADQFSV---------------NRELSRSL 61
           +DEY  LRRKYD A G++E+G EKLRQMAR+ADQF V               ++ELS  L
Sbjct: 70  KDEYETLRRKYDDAIGRMERGAEKLRQMARVADQFLVQARTLRQGVIPTRDTDKELSHFL 129

BLAST of PI0006907 vs. ExPASy TrEMBL
Match: A0A5A7TP68 (Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold75G00980 PE=4 SV=1)

HSP 1 Score: 71.2 bits (173), Expect = 1.6e-09
Identity = 41/68 (60.29%), Postives = 45/68 (66.18%), Query Frame = 0

Query: 2  EDEYGILRRKYDGARGQIEQGGEKLRQMARIADQFSV---------------NRELSRSL 55
          +DEY  LRRKYD A GQ+E+G EKLRQMAR+ADQFSV               NRELS  L
Sbjct: 9  KDEYETLRRKYDYAIGQMERGAEKLRQMARVADQFSVQARTLRQGVIPTRDTNRELSHFL 68

BLAST of PI0006907 vs. NCBI nr
Match: KAA0046606.1 (glial fibrillary acidic protein-like [Cucumis melo var. makuwa])

HSP 1 Score: 74.7 bits (182), Expect = 3.0e-10
Identity = 41/74 (55.41%), Postives = 48/74 (64.86%), Query Frame = 0

Query: 2   EDEYGILRRKYDGARGQIEQGGEKLRQMARIADQFSV---------------NRELSRSL 61
           +DEY  LRRKYD A G++E+G EKLRQMAR+ADQFSV               ++ELS  L
Sbjct: 392 KDEYETLRRKYDDAIGRMERGAEKLRQMARVADQFSVQARTLRQGVIPTRDTDKELSHFL 451

BLAST of PI0006907 vs. NCBI nr
Match: KAA0065294.1 (glial fibrillary acidic protein-like [Cucumis melo var. makuwa])

HSP 1 Score: 73.9 bits (180), Expect = 5.1e-10
Identity = 41/74 (55.41%), Postives = 48/74 (64.86%), Query Frame = 0

Query: 2   EDEYGILRRKYDGARGQIEQGGEKLRQMARIADQFSV---------------NRELSRSL 61
           +DEY  LRRKYD A G++E+G EKLRQMAR+ADQFSV               ++ELS  L
Sbjct: 181 KDEYETLRRKYDDAIGRMERGAEKLRQMARVADQFSVQARTLRQGVIPTRDTDKELSHFL 240

BLAST of PI0006907 vs. NCBI nr
Match: KAA0033848.1 (glial fibrillary acidic protein-like [Cucumis melo var. makuwa] >TYK01230.1 glial fibrillary acidic protein-like [Cucumis melo var. makuwa])

HSP 1 Score: 72.4 bits (176), Expect = 1.5e-09
Identity = 40/73 (54.79%), Postives = 45/73 (61.64%), Query Frame = 0

Query: 3   DEYGILRRKYDGARGQIEQGGEKLRQMARIADQFSV---------------NRELSRSLW 61
           DEY I+R KY+  +GQIEQG +KLR MAR ADQFS                +RELSR L 
Sbjct: 175 DEYNIMRHKYEDVKGQIEQGPKKLRHMARKADQFSTRTIALQQDIVPIQRGSRELSRFLG 234

BLAST of PI0006907 vs. NCBI nr
Match: TYK27025.1 (glial fibrillary acidic protein-like [Cucumis melo var. makuwa])

HSP 1 Score: 71.6 bits (174), Expect = 2.5e-09
Identity = 40/74 (54.05%), Postives = 47/74 (63.51%), Query Frame = 0

Query: 2   EDEYGILRRKYDGARGQIEQGGEKLRQMARIADQFSV---------------NRELSRSL 61
           +DEY  LRRKYD A G++E+G EKLRQMAR+ADQF V               ++ELS  L
Sbjct: 70  KDEYETLRRKYDDAIGRMERGAEKLRQMARVADQFLVQARTLRQGVIPTRDTDKELSHFL 129

BLAST of PI0006907 vs. NCBI nr
Match: KAA0043019.1 (uncharacterized protein E6C27_scaffold75G00980 [Cucumis melo var. makuwa])

HSP 1 Score: 71.2 bits (173), Expect = 3.3e-09
Identity = 41/68 (60.29%), Postives = 45/68 (66.18%), Query Frame = 0

Query: 2  EDEYGILRRKYDGARGQIEQGGEKLRQMARIADQFSV---------------NRELSRSL 55
          +DEY  LRRKYD A GQ+E+G EKLRQMAR+ADQFSV               NRELS  L
Sbjct: 9  KDEYETLRRKYDYAIGQMERGAEKLRQMARVADQFSVQARTLRQGVIPTRDTNRELSHFL 68

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5A7TXA11.5e-1055.41Glial fibrillary acidic protein-like OS=Cucumis melo var. makuwa OX=1194695 GN=E... [more]
A0A5A7VDD92.5e-1055.41Glial fibrillary acidic protein-like OS=Cucumis melo var. makuwa OX=1194695 GN=E... [more]
A0A5D3BQ937.2e-1054.79Glial fibrillary acidic protein-like OS=Cucumis melo var. makuwa OX=1194695 GN=E... [more]
A0A5D3DUN11.2e-0954.05Glial fibrillary acidic protein-like OS=Cucumis melo var. makuwa OX=1194695 GN=E... [more]
A0A5A7TP681.6e-0960.29Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 ... [more]
Match NameE-valueIdentityDescription
KAA0046606.13.0e-1055.41glial fibrillary acidic protein-like [Cucumis melo var. makuwa][more]
KAA0065294.15.1e-1055.41glial fibrillary acidic protein-like [Cucumis melo var. makuwa][more]
KAA0033848.11.5e-0954.79glial fibrillary acidic protein-like [Cucumis melo var. makuwa] >TYK01230.1 glia... [more]
TYK27025.12.5e-0954.05glial fibrillary acidic protein-like [Cucumis melo var. makuwa][more]
KAA0043019.13.3e-0960.29uncharacterized protein E6C27_scaffold75G00980 [Cucumis melo var. makuwa][more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
PI0006907.1PI0006907.1mRNA