PI0006740 (gene) Melon (PI 482460) v1

Overview


Name	PI0006740
Type	gene
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	F-box protein SKIP24 isoform X2
Location	chr08: 7173390 .. 7177724 (+)
RNA-Seq Expression	PI0006740
Synteny	PI0006740

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TGAAAAGTTTGGAGGAGATTTTTTATAATTTAGCGAAACAAATAAATAAAAGAAGAAGAAAAGAGAAAGGAGGATACTGATAGTCGATGATAAAGATTGCTCCGATGATGTTTGGAATTGGATTTTAGGGCTATTTCACACTCTTCATTTCCATCTTCGCAAATCCGAAAATGTCTGAATTGCCAGATGAGCTATGGACCCAAATTCTCCAAATTGGTGTAAAGACCTATGCTTTGACTTACAAAGATCTTTGTTGCGTCTCCATCTCTTCTCCTCGTCTTCGCCGCCTCTCCGACGATGACTCTCTCTGGTCTCATCTTCTCTCCTCCGATTACCCTTCATCCTCTTCTTCTTTTCCATCTTCCGCTTCCTCCTCAAAGTCCCTTTACAAAATCAGGTAGAAGAAAGAATTCATGAACCTGCACATATCTCTGAATTTCTCTCTTCCAATATCTCTCGATTCATAGTTCTTTTTTTTCTTCTTCTTCTTCTTCTTCTTTTGTTCTGGTTAGGTTGGAGAGAGATAGATATAGGAAGAAAGCGGTGCATACGAGAGCTGTTCTTAGAAAGGAAAGCCAAATAGCTGAGCATTATAGGAGGGTTGGTCAATTAGAGGAACGGTTGATGGAGGAGACCAGCAAATGGACAACGACCTTGACGGAATTGTCTAATTTACGCACAGTCAGGTAGGTTCGCCAATTGATTCAAAATCCTTCAGTAATATTTTCTGTTTCTTTTCTCGTTTGGTGTTTTAGTGATATGTTATGTGTTCTTGTGCGACTTGGTTGCTTGCAATCTGTAAAATAGTTGATTGGTATTGTGTTTTCGTTGAGTTTTCTAAGCATTTGTTAAAAGGGGGAGACTATAATAACTGATTATTGTCATTATATGTAAATTCACTAGGATTCTCTTACTAAATTTTGAGTTCAACATCTGGGGTCGAGGCGTATGAATCTCTAACCTTTTGGGTCGAGGCATATGCCTAAACCGGTTTGAACTATGCTTAGGTTGGCAAGATCATTTTACTAGCTCGGGTGGTACTTCAGTTATTTGTTGATAACAAAGCCCAATGGATTCATTTGTCTAATGTGTGTCTAATCTTGGTAACTTTTTGAAACTTTTTACCTCTACACATGAATGCTAAAATGTTGAGTTTGGTTTGAAGTCAGAATTTTTAGATATGATAATTGTGTTTGGTCGTCTCAGGGAGGCAACAGTAGCTTTGAATGTTTGGCAGCCTGAGGTCATTAGGGCAAGGCAAAAGCAAATTGTTGAACAATGCAGTGTATCTGTTGATTCTCGTTTGCGGACTCTAGATATGGAGCTCAAGCTTTGTAAGCAACAAATTGCGATTTTTCGAAAAGCACTTGTAAGTTTTGAATGTGGAAACATTATTTTTCTATCTGTTAAGAACTACAATTTTAATTTCTTATACTGCTTGCCACAGAAAGATGAAAAAAAGAGATTGGAATTAGCTAAAGAAGAGTTAACTTCATTGAAGTATCATCCTCTAAAGGATCATAAATCTATGGATAGCAGTAATAATGATTCTCACATCAAGAGGAAGTCAAAGGATGCAATAAATGTAAGGTTCTTGCTTGTTGATTATGCTTCAAATTTTTTTATTGTGAATTTTGATAATTTTGTCGTGTTGATGATGGTTTGGTTGCTATGAAATCTGACTTTCCTGTGAAATCATGAATTCTAATGTGTGCATGTGCACTGTGCTCTATTAGCATTTTTCTTCGTCAAACCATCATTATTGTTTTCTCATGATGTTAGAACTTCTCCCAGTTTTACTAAATAAACTCATTAGGATACTAGGTACTTCTTATGAAAATATTTTCCTAGTCTGGCCATGGATTGATGCTCACTGTTCGTTGGTAGATTATCTATGTGATTGATTTGTAATTAGGTTTCTTGGATTGATCTATATTTTATTTTACATACTTGATTGATTAAGTTGTAAACATGTATATACTCTGCCTTTTTTTCCACAAATAAATTGGAAGAGAAAATTAGCTTACATTTCTGTTACTTCAGTGTGGAAATTGTGGCTTACCTCTTTTTTCATTCGATACATAAAGATAACCAAATGTTGGCACATTAACTGACTTTTTTTTCATGTGGTTATTTTATTTTCTGGTTAAAATTTCTTCAACCTTCATGACCACACTATTGTTCATTCCTCAACTTTCACCAGCCCGACTTAGATAATATATTCTCCTTTATTGCCTATATTGGTACCCATCCCTTATATGTACTGTATATGTTGCATGTTTGCTTAAAATCCAAGTGAGAACACATACTGATATGATAAATATACTTGATTACCAAATTTTATCAGAGCAAGGTAAAACAGTTACGCAGTACATGATTGGGGGAGCATTGCCTGTTGAAGAATGAGCCTGTCCTCAACATATAGGCAGTGGAACTACTAAAAACAGTTATGTATTCCAGTTGAGATGAACGTAAGTACATAACCACAAAAGTGTTCTGCACTGGGTGCAGAGTAATAATAAGATCGACCTGTTATATCAAACATCATATGGAGTTTTACATTTTAGTCAAATGGGGAATTTTATAAATCAGTTGGAAGATCGTCAATAAGGGCTTCTTTAGCCCAAGGAAATACGTCAACTCCCACTTTGGCCTACAGATAAAGCAACTCACGGCAAATTAAACCCAAGTCAGGACTACAACACTAATTCACTGTTGAAGTTCCCACGTTCATCGAGGTACTCCCCTTCACTCTTCATTTCTCTCCTCTCCCTCTCTTTGGCAGATTATCTCGTCTATTGTCTTCAAATTGTTAATTTTTTCTTCACCATTGCAAGTTTTTTCCCTTCCAAATCTGTTTGTGTGTGTGTGTGTTTTCCAGATTCATAGCTCTAAATGCTCTACTCTTTTCAGATCTGAGACCCTTAAGCTCCTCAGCTGCCTCAAGGAAAAGTAAAAAAAATCACTCTTGTCACAAGAAAGAGCTTAGCTCAATTGACATCATGTATGCTTAAATATCAAGAGGTTCGTGGTTCAAATCTCCCCCCACACTTGTACTCAAATCAGTCTCTTGGTGCTATCTTTCTTATTCCCTCATCTACTGTAGCTTCCTTGCCGTTGGTTGTGTTTTTTGTATTTGAGTTAAAATAACAAAGGAATAGCTTGGTAGGAGACAGCTAGTGCTTGAATCTTGGTGGGCGGAGACAACTGCTTAAGCTTTGCTCTATCCTTTCAAAATTGGTCGATGATAGGTCATACATGTTCAATCTGTATTTTTGCTGCATGAATTTCTTCATTTCTTCCTCGAGAAATTTTCTCCGATATGTTTGTCTTTGTTTTCACTCATTTTTTACTCTATTTTTGTCTTCATTTGTGTTTGCTTGGATCTGTTTTTTTTCCCAATTTATTTTCTTAAATTTCATTTATATGAAAAAAAATCATTTATGGGTTGCATGAATGACATTTCATGTTGGAATATCATTATGAACGGACGATGTATTTGGTGCGTGTGCCAGAGTAAGAGGCCAAGATTACAAATTCATATCAAATTATATTGAACTGTAATTGATACTAATATATCTGTTTGAACATGTAGTGTTCCTTATGATTGCAAATAGACTAGGAAAGAAGTCCTTCCCTCATTATGATGAGTTGTCATTCGTGTTTGGAAAGAGGATCGAGCTACTAAAGTGGGTCTAGAGACTCCACGGGATATGGCATCAAATGACGATGAGCACTTGGGGCAGATGTGCATGTGGGAGGATCTCAAGAACATTATATTTCAGTTCCCTCGATGTTTGGCACAACAGCCACTGTATACAAAGGCTTTTGGAGTCGACCTAGTAGAGGTAGAGACTAACATTGCTGAGGTAGTAAGAAGAAATGAACAACATATCACTCAGATATGTTTAGACGTGGTATGGATGATTATAAACATGCAAACAAGCCAACAGCTTGATAGGATTGCATCTTGGTTTAAATCAAAGCATGCTATGGTGGAGTCCAGACAAGGGAAGGAAGTGGTGGAGAGAGATTCCCTCAATTATTAGAGTTGTTCCAATGGGTTAAGGTCAAACTAATGGATATCATATTTACGAATGTAGATAGAACAAAAATTTCTTGCCTATTCCAATCAAGCTGATAAGTACTTGTTGAATCCACTTTTGGGTAAAGGTGAATAAATAGCCTGTCTTTCAACAAAATCAATTTGCTTGGGTTGGAAAAGAACAATTTTTTTAAAACAACTCAATTTGATCCTCATTTTTTCATATTAAAACTGTATATACTTTTTTCTTTCATTTTAAGTTTGAACCACTGACTTACTTTGTACTGTAC

mRNA sequence

TGAAAAGTTTGGAGGAGATTTTTTATAATTTAGCGAAACAAATAAATAAAAGAAGAAGAAAAGAGAAAGGAGGATACTGATAGTCGATGATAAAGATTGCTCCGATGATGTTTGGAATTGGATTTTAGGGCTATTTCACACTCTTCATTTCCATCTTCGCAAATCCGAAAATGTCTGAATTGCCAGATGAGCTATGGACCCAAATTCTCCAAATTGGTGTAAAGACCTATGCTTTGACTTACAAAGATCTTTGTTGCGTCTCCATCTCTTCTCCTCGTCTTCGCCGCCTCTCCGACGATGACTCTCTCTGGTCTCATCTTCTCTCCTCCGATTACCCTTCATCCTCTTCTTCTTTTCCATCTTCCGCTTCCTCCTCAAAGTCCCTTTACAAAATCAGGTTGGAGAGAGATAGATATAGGAAGAAAGCGGTGCATACGAGAGCTGTTCTTAGAAAGGAAAGCCAAATAGCTGAGCATTATAGGAGGGTTGGTCAATTAGAGGAACGGTTGATGGAGGAGACCAGCAAATGGACAACGACCTTGACGGAATTGTCTAATTTACGCACAGTCAGGGAGGCAACAGTAGCTTTGAATGTTTGGCAGCCTGAGGTCATTAGGGCAAGGCAAAAGCAAATTGTTGAACAATGCAGTGTATCTGTTGATTCTCGTTTGCGGACTCTAGATATGGAGCTCAAGCTTTGTAAGCAACAAATTGCGATTTTTCGAAAAGCACTTAAAGATGAAAAAAAGAGATTGGAATTAGCTAAAGAAGAGTTAACTTCATTGAAGTATCATCCTCTAAAGGATCATAAATCTATGGATAGCAGTAATAATGATTCTCACATCAAGAGGAAGTCAAAGGATGCAATAAATAGCAAGGTAAAACAGTTACGCAGTACATGATTGGGGGAGCATTGCCTGTTGAAGAATGAGCCTGTCCTCAACATATAGGCAGTGGAACTACTAAAAACAGTTATGTATTCCAGTTGAGATGAACGTAAGTACATAACCACAAAAGTGTTCTGCACTGGGTGCAGAGTAATAATAAGATCGACCTGTTATATCAAACATCATATGGAGTTTTACATTTTAGTCAAATGGGGAATTTTATAAATCAGTTGGAAGATCGTCAATAAGGGCTTCTTTAGCCCAAGGAAATACGTCAACTCCCACTTTGGCCTACAGATAAAGCAACTCACGGCAAATTAAACCCAAGTCAGGACTACAACACTAATTCACTGTTGAAGTTCCCACGTTCATCGAGATCTGAGACCCTTAAGCTCCTCAGCTGCCTCAAGGAAAAGTAAAAAAAATCACTCTTGTCACAAGAAAGAGCTTAGCTCAATTGACATCATGTATGCTTAAATATCAAGAGTGTTCCTTATGATTGCAAATAGACTAGGAAAGAAGTCCTTCCCTCATTATGATGAGTTGTCATTCGTGTTTGGAAAGAGGATCGAGCTACTAAAGTGGGTCTAGAGACTCCACGGGATATGGCATCAAATGACGATGAGCACTTGGGGCAGATGTGCATGTGGGAGGATCTCAAGAACATTATATTTCAGTTCCCTCGATGTTTGGCACAACAGCCACTGTATACAAAGGCTTTTGGAGTCGACCTAGTAGAGGTAGAGACTAACATTGCTGAGGTAGTAAGAAGAAATGAACAACATATCACTCAGATATGTTTAGACGTGGTATGGATGATTATAAACATGCAAACAAGCCAACAGCTTGATAGGATTGCATCTTGGTTTAAATCAAAGCATGCTATGGTGGAGTCCAGACAAGGGAAGGAAGTGGTGGAGAGAGATTCCCTCAATTATTAGAGTTGTTCCAATGGGTTAAGGTCAAACTAATGGATATCATATTTACGAATGTAGATAGAACAAAAATTTCTTGCCTATTCCAATCAAGCTGATAAGTACTTGTTGAATCCACTTTTGGGTAAAGGTGAATAAATAGCCTGTCTTTCAACAAAATCAATTTGCTTGGGTTGGAAAAGAACAATTTTTTTAAAACAACTCAATTTGATCCTCATTTTTTCATATTAAAACTGTATATACTTTTTTCTTTCATTTTAAGTTTGAACCACTGACTTACTTTGTACTGTAC

Coding sequence (CDS)

ATGTCTGAATTGCCAGATGAGCTATGGACCCAAATTCTCCAAATTGGTGTAAAGACCTATGCTTTGACTTACAAAGATCTTTGTTGCGTCTCCATCTCTTCTCCTCGTCTTCGCCGCCTCTCCGACGATGACTCTCTCTGGTCTCATCTTCTCTCCTCCGATTACCCTTCATCCTCTTCTTCTTTTCCATCTTCCGCTTCCTCCTCAAAGTCCCTTTACAAAATCAGGTTGGAGAGAGATAGATATAGGAAGAAAGCGGTGCATACGAGAGCTGTTCTTAGAAAGGAAAGCCAAATAGCTGAGCATTATAGGAGGGTTGGTCAATTAGAGGAACGGTTGATGGAGGAGACCAGCAAATGGACAACGACCTTGACGGAATTGTCTAATTTACGCACAGTCAGGGAGGCAACAGTAGCTTTGAATGTTTGGCAGCCTGAGGTCATTAGGGCAAGGCAAAAGCAAATTGTTGAACAATGCAGTGTATCTGTTGATTCTCGTTTGCGGACTCTAGATATGGAGCTCAAGCTTTGTAAGCAACAAATTGCGATTTTTCGAAAAGCACTTAAAGATGAAAAAAAGAGATTGGAATTAGCTAAAGAAGAGTTAACTTCATTGAAGTATCATCCTCTAAAGGATCATAAATCTATGGATAGCAGTAATAATGATTCTCACATCAAGAGGAAGTCAAAGGATGCAATAAATAGCAAGGTAAAACAGTTACGCAGTACATGA

Protein sequence

MSELPDELWTQILQIGVKTYALTYKDLCCVSISSPRLRRLSDDDSLWSHLLSSDYPSSSSSFPSSASSSKSLYKIRLERDRYRKKAVHTRAVLRKESQIAEHYRRVGQLEERLMEETSKWTTTLTELSNLRTVREATVALNVWQPEVIRARQKQIVEQCSVSVDSRLRTLDMELKLCKQQIAIFRKALKDEKKRLELAKEELTSLKYHPLKDHKSMDSSNNDSHIKRKSKDAINSKVKQLRST

Homology

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BLAST of PI0006740 vs. ExPASy Swiss-Prot
Match: Q9CAZ0 (F-box protein SKIP24 OS=Arabidopsis thaliana OX=3702 GN=SKIP24 PE=1 SV=2)

HSP 1 Score: 216.1 bits (549), Expect = 4.4e-55
Identity = 125/235 (53.19%), Postives = 173/235 (73.62%), Query Frame = 0


Query: 2   SELPDELWTQILQIGVKTYALTYKDLCCVSISSPRLRRLSDDDSLWSHLLSSDYPSS-SS 61
           +E+PDELW +IL+IGVK+   +YKDLCC+SISS RL RLS DDSLW  LL  D+P+   S
Sbjct: 4   NEIPDELWRKILEIGVKSSTFSYKDLCCISISSRRLFRLSCDDSLWDLLLVHDFPNHIVS 63

Query: 62  SFPSSASSSKSLYKIRLERDRYRKKAVHTRAVLRKESQIAEHYRRVGQLEERLMEETSKW 121
           +  SS S +K +Y  R ER++ RK A H RA+LRKES+I+E  RR+ +LE RL +E  + 
Sbjct: 64  ASSSSESPTKFIYMTRFEREKERKLAAHRRALLRKESEISEWGRRIRELEARLSDEAERL 123

Query: 122 TTTLTELSNLRTVREATVALNVWQPEVIRARQKQIVEQCSVSVDSRLRTLDMELKLCKQQ 181
            ++  + S+L  VR+A+VALNVWQPEV+R RQKQ+VEQ +V V+ RLR L+ME+KLCKQQ
Sbjct: 124 QSSSLQFSDLLKVRQASVALNVWQPEVVRGRQKQMVEQNAVPVEGRLRALEMEMKLCKQQ 183

Query: 182 IAIFRKALKDEKKRLELAKEELTSLKYHPLKDHKSMDSSNNDSHIK-RKSKDAIN 235
           I    +AL++ K R ++A +EL S+KYHPL+D+KS+ + +  S+ K +K K +IN
Sbjct: 184 IMGLNRALREVKHRYDIAIKELESMKYHPLRDYKSIRNGDQGSNGKTKKLKTSIN 238

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BLAST of PI0006740 vs. ExPASy TrEMBL
Match: A0A1S4E0S8 (F-box protein SKIP24 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103495869 PE=4 SV=1)

HSP 1 Score: 431.4 bits (1108), Expect = 2.5e-117
Identity = 234/243 (96.30%), Postives = 239/243 (98.35%), Query Frame = 0


Query: 1   MSELPDELWTQILQIGVKTYALTYKDLCCVSISSPRLRRLSDDDSLWSHLLSSDYPSSSS 60
           MSELPDELW+QILQIGVKT ALTYKDLCCVSISSPRLRRLSD DSLWSHLLSSDYPSSSS
Sbjct: 1   MSELPDELWSQILQIGVKTSALTYKDLCCVSISSPRLRRLSDHDSLWSHLLSSDYPSSSS 60

Query: 61  SFPSSASSSKSLYKIRLERDRYRKKAVHTRAVLRKESQIAEHYRRVGQLEERLMEETSKW 120
           SFPSSASSSKSLYKIRLERDRYRKKA HTRAVLRKESQIAEHYRRVGQLEERL+EETSK 
Sbjct: 61  SFPSSASSSKSLYKIRLERDRYRKKAAHTRAVLRKESQIAEHYRRVGQLEERLIEETSKC 120

Query: 121 TTTLTELSNLRTVREATVALNVWQPEVIRARQKQIVEQCSVSVDSRLRTLDMELKLCKQQ 180
           TTTLTELSNLRTVREATVALNVWQPEVIRARQKQIVEQCSVSVDSRLRTLDMELKLCKQQ
Sbjct: 121 TTTLTELSNLRTVREATVALNVWQPEVIRARQKQIVEQCSVSVDSRLRTLDMELKLCKQQ 180

Query: 181 IAIFRKALKDEKKRLELAKEELTSLKYHPLKDHKSMDSSNNDSHIKRKSKDAINSKVKQL 240
           IAIF+KALKDEKKRLELAKEELTSLKYHPLKDHKSM+SSNNDSHIKR+SKDAINSKVKQL
Sbjct: 181 IAIFQKALKDEKKRLELAKEELTSLKYHPLKDHKSMNSSNNDSHIKRRSKDAINSKVKQL 240

Query: 241 RST 244
           RST
Sbjct: 241 RST 243

[Close]

BLAST of PI0006740 vs. ExPASy TrEMBL
Match: A0A1S4E0Q4 (F-box protein SKIP24 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103495869 PE=4 SV=1)

HSP 1 Score: 425.2 bits (1092), Expect = 1.8e-115
Identity = 234/248 (94.35%), Postives = 239/248 (96.37%), Query Frame = 0


Query: 1   MSELPDELWTQILQIGVKTYALTYKDLCCVSISSPRLRRLSDDDSLWSHLLSSDYPSSSS 60
           MSELPDELW+QILQIGVKT ALTYKDLCCVSISSPRLRRLSD DSLWSHLLSSDYPSSSS
Sbjct: 1   MSELPDELWSQILQIGVKTSALTYKDLCCVSISSPRLRRLSDHDSLWSHLLSSDYPSSSS 60

Query: 61  SFPSSASSSKSLYKIRLERDRYRKKAVHTRAVLRKESQIAEHYRRVGQLEERLMEETSKW 120
           SFPSSASSSKSLYKIRLERDRYRKKA HTRAVLRKESQIAEHYRRVGQLEERL+EETSK 
Sbjct: 61  SFPSSASSSKSLYKIRLERDRYRKKAAHTRAVLRKESQIAEHYRRVGQLEERLIEETSKC 120

Query: 121 TTTLTELSNLRTV-----REATVALNVWQPEVIRARQKQIVEQCSVSVDSRLRTLDMELK 180
           TTTLTELSNLRTV     REATVALNVWQPEVIRARQKQIVEQCSVSVDSRLRTLDMELK
Sbjct: 121 TTTLTELSNLRTVRFGRLREATVALNVWQPEVIRARQKQIVEQCSVSVDSRLRTLDMELK 180

Query: 181 LCKQQIAIFRKALKDEKKRLELAKEELTSLKYHPLKDHKSMDSSNNDSHIKRKSKDAINS 240
           LCKQQIAIF+KALKDEKKRLELAKEELTSLKYHPLKDHKSM+SSNNDSHIKR+SKDAINS
Sbjct: 181 LCKQQIAIFQKALKDEKKRLELAKEELTSLKYHPLKDHKSMNSSNNDSHIKRRSKDAINS 240

Query: 241 KVKQLRST 244
           KVKQLRST
Sbjct: 241 KVKQLRST 248

[Close]

BLAST of PI0006740 vs. ExPASy TrEMBL
Match: A0A0A0L0S2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G416990 PE=4 SV=1)

HSP 1 Score: 425.2 bits (1092), Expect = 1.8e-115
Identity = 228/243 (93.83%), Postives = 234/243 (96.30%), Query Frame = 0


Query: 1   MSELPDELWTQILQIGVKTYALTYKDLCCVSISSPRLRRLSDDDSLWSHLLSSDYPSSSS 60
           MSELPDELW QILQIGVKTYALTYKDLCCVSISSPRLRRLSD DSLWSHLL SDYPSSSS
Sbjct: 1   MSELPDELWNQILQIGVKTYALTYKDLCCVSISSPRLRRLSDHDSLWSHLLFSDYPSSSS 60

Query: 61  SFPSSASSSKSLYKIRLERDRYRKKAVHTRAVLRKESQIAEHYRRVGQLEERLMEETSKW 120
           SFPSSASSSKSLYKIRLERDRYRKKA HTRAVLRKESQIAEHYRRV QLEERL+EET KW
Sbjct: 61  SFPSSASSSKSLYKIRLERDRYRKKAAHTRAVLRKESQIAEHYRRVSQLEERLIEETGKW 120

Query: 121 TTTLTELSNLRTVREATVALNVWQPEVIRARQKQIVEQCSVSVDSRLRTLDMELKLCKQQ 180
           TT+ TE SNLRTVREATVALNVWQPEVIRARQKQIVEQCSVSVDSRLRTLDMELKLCKQQ
Sbjct: 121 TTSFTEFSNLRTVREATVALNVWQPEVIRARQKQIVEQCSVSVDSRLRTLDMELKLCKQQ 180

Query: 181 IAIFRKALKDEKKRLELAKEELTSLKYHPLKDHKSMDSSNNDSHIKRKSKDAINSKVKQL 240
           IAIF+KALKDEKKRLELAKEELTSLKYHPLKDHK M+SSNND+HIKR+SKDAINSKVKQL
Sbjct: 181 IAIFQKALKDEKKRLELAKEELTSLKYHPLKDHKYMNSSNNDTHIKRRSKDAINSKVKQL 240

Query: 241 RST 244
           RST
Sbjct: 241 RST 243

[Close]

BLAST of PI0006740 vs. ExPASy TrEMBL
Match: A0A5D3CCI3 (F-box protein SKIP24 isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold447G001230 PE=4 SV=1)

HSP 1 Score: 416.0 bits (1068), Expect = 1.1e-112
Identity = 226/242 (93.39%), Postives = 233/242 (96.28%), Query Frame = 0


Query: 1   MSELPDELWTQILQIGVKTYALTYKDLCCVSISSPRLRRLSDDDSLWSHLLSSDYPSSSS 60
           MSELPDELW+QILQIGVKT ALTYKDLCCVSISSPRLRRLSD DSLWSHLLSSDYPSSSS
Sbjct: 1   MSELPDELWSQILQIGVKTSALTYKDLCCVSISSPRLRRLSDHDSLWSHLLSSDYPSSSS 60

Query: 61  SFPSSASSSKSLYKIRLERDRYRKKAVHTRAVLRKESQIAEHYRRVGQLEERLMEETSKW 120
           SFPSSASSSKSLYKIRLERDRYRKKA HTRAVLRKESQIAEHYRRVGQLEERL+EETSK 
Sbjct: 61  SFPSSASSSKSLYKIRLERDRYRKKAAHTRAVLRKESQIAEHYRRVGQLEERLIEETSKC 120

Query: 121 TTTLTELSNLRTVREATVALNVWQPEVIRARQKQIVEQCSVSVDSRLRTLDMELKLCKQQ 180
           TTTLTELSNLRTVREATVALNVWQPEVIRARQKQIVEQCSVSVDSRLRTLDMELKLCKQQ
Sbjct: 121 TTTLTELSNLRTVREATVALNVWQPEVIRARQKQIVEQCSVSVDSRLRTLDMELKLCKQQ 180

Query: 181 IAIFRKALKDEKKRLELAKEELTSLKYHPLKDHKSMDSSNNDSHIKRKSKDAINSKVKQL 240
           IAIF+KALKDEKKRLELAKEELTSLKYHPLKDHKSM+SSNNDSHIKR+SKDAIN +   L
Sbjct: 181 IAIFQKALKDEKKRLELAKEELTSLKYHPLKDHKSMNSSNNDSHIKRRSKDAINVRFISL 240

Query: 241 RS 243
            +
Sbjct: 241 NT 242

[Close]

BLAST of PI0006740 vs. ExPASy TrEMBL
Match: A0A1S3C1S8 (F-box protein SKIP24 isoform X3 OS=Cucumis melo OX=3656 GN=LOC103495869 PE=4 SV=1)

HSP 1 Score: 411.4 bits (1056), Expect = 2.7e-111
Identity = 226/242 (93.39%), Postives = 231/242 (95.45%), Query Frame = 0


Query: 1   MSELPDELWTQILQIGVKTYALTYKDLCCVSISSPRLRRLSDDDSLWSHLLSSDYPSSSS 60
           MSELPDELW+QILQIGVKT ALTYKDLCCVSISSPRLRRLSD DSLWSHLLSSDYPSSSS
Sbjct: 1   MSELPDELWSQILQIGVKTSALTYKDLCCVSISSPRLRRLSDHDSLWSHLLSSDYPSSSS 60

Query: 61  SFPSSASSSKSLYKIRLERDRYRKKAVHTRAVLRKESQIAEHYRRVGQLEERLMEETSKW 120
           SFPSSASSSKSLYKIRLERDRYRKKA HTRAVLRKESQIAEHYRRVGQLEERL+EETSK 
Sbjct: 61  SFPSSASSSKSLYKIRLERDRYRKKAAHTRAVLRKESQIAEHYRRVGQLEERLIEETSKC 120

Query: 121 TTTLTELSNLRTV-----REATVALNVWQPEVIRARQKQIVEQCSVSVDSRLRTLDMELK 180
           TTTLTELSNLRTV     REATVALNVWQPEVIRARQKQIVEQCSVSVDSRLRTLDMELK
Sbjct: 121 TTTLTELSNLRTVRFGRLREATVALNVWQPEVIRARQKQIVEQCSVSVDSRLRTLDMELK 180

Query: 181 LCKQQIAIFRKALKDEKKRLELAKEELTSLKYHPLKDHKSMDSSNNDSHIKRKSKDAINS 238
           LCKQQIAIF+KALKDEKKRLELAKEELTSLKYHPLKDHKSM+SSNNDSHIKR+SKDAIN 
Sbjct: 181 LCKQQIAIFQKALKDEKKRLELAKEELTSLKYHPLKDHKSMNSSNNDSHIKRRSKDAINC 240

[Close]

BLAST of PI0006740 vs. NCBI nr
Match: XP_016901824.1 (PREDICTED: F-box protein SKIP24 isoform X2 [Cucumis melo])

HSP 1 Score: 431.4 bits (1108), Expect = 5.1e-117
Identity = 234/243 (96.30%), Postives = 239/243 (98.35%), Query Frame = 0


Query: 1   MSELPDELWTQILQIGVKTYALTYKDLCCVSISSPRLRRLSDDDSLWSHLLSSDYPSSSS 60
           MSELPDELW+QILQIGVKT ALTYKDLCCVSISSPRLRRLSD DSLWSHLLSSDYPSSSS
Sbjct: 1   MSELPDELWSQILQIGVKTSALTYKDLCCVSISSPRLRRLSDHDSLWSHLLSSDYPSSSS 60

Query: 61  SFPSSASSSKSLYKIRLERDRYRKKAVHTRAVLRKESQIAEHYRRVGQLEERLMEETSKW 120
           SFPSSASSSKSLYKIRLERDRYRKKA HTRAVLRKESQIAEHYRRVGQLEERL+EETSK 
Sbjct: 61  SFPSSASSSKSLYKIRLERDRYRKKAAHTRAVLRKESQIAEHYRRVGQLEERLIEETSKC 120

Query: 121 TTTLTELSNLRTVREATVALNVWQPEVIRARQKQIVEQCSVSVDSRLRTLDMELKLCKQQ 180
           TTTLTELSNLRTVREATVALNVWQPEVIRARQKQIVEQCSVSVDSRLRTLDMELKLCKQQ
Sbjct: 121 TTTLTELSNLRTVREATVALNVWQPEVIRARQKQIVEQCSVSVDSRLRTLDMELKLCKQQ 180

Query: 181 IAIFRKALKDEKKRLELAKEELTSLKYHPLKDHKSMDSSNNDSHIKRKSKDAINSKVKQL 240
           IAIF+KALKDEKKRLELAKEELTSLKYHPLKDHKSM+SSNNDSHIKR+SKDAINSKVKQL
Sbjct: 181 IAIFQKALKDEKKRLELAKEELTSLKYHPLKDHKSMNSSNNDSHIKRRSKDAINSKVKQL 240

Query: 241 RST 244
           RST
Sbjct: 241 RST 243

[Close]

BLAST of PI0006740 vs. NCBI nr
Match: XP_016901822.1 (PREDICTED: F-box protein SKIP24 isoform X1 [Cucumis melo] >XP_016901823.1 PREDICTED: F-box protein SKIP24 isoform X1 [Cucumis melo])

HSP 1 Score: 425.2 bits (1092), Expect = 3.7e-115
Identity = 234/248 (94.35%), Postives = 239/248 (96.37%), Query Frame = 0


Query: 1   MSELPDELWTQILQIGVKTYALTYKDLCCVSISSPRLRRLSDDDSLWSHLLSSDYPSSSS 60
           MSELPDELW+QILQIGVKT ALTYKDLCCVSISSPRLRRLSD DSLWSHLLSSDYPSSSS
Sbjct: 1   MSELPDELWSQILQIGVKTSALTYKDLCCVSISSPRLRRLSDHDSLWSHLLSSDYPSSSS 60

Query: 61  SFPSSASSSKSLYKIRLERDRYRKKAVHTRAVLRKESQIAEHYRRVGQLEERLMEETSKW 120
           SFPSSASSSKSLYKIRLERDRYRKKA HTRAVLRKESQIAEHYRRVGQLEERL+EETSK 
Sbjct: 61  SFPSSASSSKSLYKIRLERDRYRKKAAHTRAVLRKESQIAEHYRRVGQLEERLIEETSKC 120

Query: 121 TTTLTELSNLRTV-----REATVALNVWQPEVIRARQKQIVEQCSVSVDSRLRTLDMELK 180
           TTTLTELSNLRTV     REATVALNVWQPEVIRARQKQIVEQCSVSVDSRLRTLDMELK
Sbjct: 121 TTTLTELSNLRTVRFGRLREATVALNVWQPEVIRARQKQIVEQCSVSVDSRLRTLDMELK 180

Query: 181 LCKQQIAIFRKALKDEKKRLELAKEELTSLKYHPLKDHKSMDSSNNDSHIKRKSKDAINS 240
           LCKQQIAIF+KALKDEKKRLELAKEELTSLKYHPLKDHKSM+SSNNDSHIKR+SKDAINS
Sbjct: 181 LCKQQIAIFQKALKDEKKRLELAKEELTSLKYHPLKDHKSMNSSNNDSHIKRRSKDAINS 240

Query: 241 KVKQLRST 244
           KVKQLRST
Sbjct: 241 KVKQLRST 248

[Close]

BLAST of PI0006740 vs. NCBI nr
Match: XP_004144305.1 (F-box protein SKIP24 isoform X1 [Cucumis sativus])

HSP 1 Score: 425.2 bits (1092), Expect = 3.7e-115
Identity = 228/243 (93.83%), Postives = 234/243 (96.30%), Query Frame = 0


Query: 1   MSELPDELWTQILQIGVKTYALTYKDLCCVSISSPRLRRLSDDDSLWSHLLSSDYPSSSS 60
           MSELPDELW QILQIGVKTYALTYKDLCCVSISSPRLRRLSD DSLWSHLL SDYPSSSS
Sbjct: 1   MSELPDELWNQILQIGVKTYALTYKDLCCVSISSPRLRRLSDHDSLWSHLLFSDYPSSSS 60

Query: 61  SFPSSASSSKSLYKIRLERDRYRKKAVHTRAVLRKESQIAEHYRRVGQLEERLMEETSKW 120
           SFPSSASSSKSLYKIRLERDRYRKKA HTRAVLRKESQIAEHYRRV QLEERL+EET KW
Sbjct: 61  SFPSSASSSKSLYKIRLERDRYRKKAAHTRAVLRKESQIAEHYRRVSQLEERLIEETGKW 120

Query: 121 TTTLTELSNLRTVREATVALNVWQPEVIRARQKQIVEQCSVSVDSRLRTLDMELKLCKQQ 180
           TT+ TE SNLRTVREATVALNVWQPEVIRARQKQIVEQCSVSVDSRLRTLDMELKLCKQQ
Sbjct: 121 TTSFTEFSNLRTVREATVALNVWQPEVIRARQKQIVEQCSVSVDSRLRTLDMELKLCKQQ 180

Query: 181 IAIFRKALKDEKKRLELAKEELTSLKYHPLKDHKSMDSSNNDSHIKRKSKDAINSKVKQL 240
           IAIF+KALKDEKKRLELAKEELTSLKYHPLKDHK M+SSNND+HIKR+SKDAINSKVKQL
Sbjct: 181 IAIFQKALKDEKKRLELAKEELTSLKYHPLKDHKYMNSSNNDTHIKRRSKDAINSKVKQL 240

Query: 241 RST 244
           RST
Sbjct: 241 RST 243

[Close]

BLAST of PI0006740 vs. NCBI nr
Match: TYK09707.1 (F-box protein SKIP24 isoform X2 [Cucumis melo var. makuwa])

HSP 1 Score: 416.0 bits (1068), Expect = 2.2e-112
Identity = 226/242 (93.39%), Postives = 233/242 (96.28%), Query Frame = 0


Query: 1   MSELPDELWTQILQIGVKTYALTYKDLCCVSISSPRLRRLSDDDSLWSHLLSSDYPSSSS 60
           MSELPDELW+QILQIGVKT ALTYKDLCCVSISSPRLRRLSD DSLWSHLLSSDYPSSSS
Sbjct: 1   MSELPDELWSQILQIGVKTSALTYKDLCCVSISSPRLRRLSDHDSLWSHLLSSDYPSSSS 60

Query: 61  SFPSSASSSKSLYKIRLERDRYRKKAVHTRAVLRKESQIAEHYRRVGQLEERLMEETSKW 120
           SFPSSASSSKSLYKIRLERDRYRKKA HTRAVLRKESQIAEHYRRVGQLEERL+EETSK 
Sbjct: 61  SFPSSASSSKSLYKIRLERDRYRKKAAHTRAVLRKESQIAEHYRRVGQLEERLIEETSKC 120

Query: 121 TTTLTELSNLRTVREATVALNVWQPEVIRARQKQIVEQCSVSVDSRLRTLDMELKLCKQQ 180
           TTTLTELSNLRTVREATVALNVWQPEVIRARQKQIVEQCSVSVDSRLRTLDMELKLCKQQ
Sbjct: 121 TTTLTELSNLRTVREATVALNVWQPEVIRARQKQIVEQCSVSVDSRLRTLDMELKLCKQQ 180

Query: 181 IAIFRKALKDEKKRLELAKEELTSLKYHPLKDHKSMDSSNNDSHIKRKSKDAINSKVKQL 240
           IAIF+KALKDEKKRLELAKEELTSLKYHPLKDHKSM+SSNNDSHIKR+SKDAIN +   L
Sbjct: 181 IAIFQKALKDEKKRLELAKEELTSLKYHPLKDHKSMNSSNNDSHIKRRSKDAINVRFISL 240

Query: 241 RS 243
            +
Sbjct: 241 NT 242

[Close]

BLAST of PI0006740 vs. NCBI nr
Match: XP_008455770.1 (PREDICTED: F-box protein SKIP24 isoform X3 [Cucumis melo])

HSP 1 Score: 411.4 bits (1056), Expect = 5.5e-111
Identity = 226/242 (93.39%), Postives = 231/242 (95.45%), Query Frame = 0


Query: 1   MSELPDELWTQILQIGVKTYALTYKDLCCVSISSPRLRRLSDDDSLWSHLLSSDYPSSSS 60
           MSELPDELW+QILQIGVKT ALTYKDLCCVSISSPRLRRLSD DSLWSHLLSSDYPSSSS
Sbjct: 1   MSELPDELWSQILQIGVKTSALTYKDLCCVSISSPRLRRLSDHDSLWSHLLSSDYPSSSS 60

Query: 61  SFPSSASSSKSLYKIRLERDRYRKKAVHTRAVLRKESQIAEHYRRVGQLEERLMEETSKW 120
           SFPSSASSSKSLYKIRLERDRYRKKA HTRAVLRKESQIAEHYRRVGQLEERL+EETSK 
Sbjct: 61  SFPSSASSSKSLYKIRLERDRYRKKAAHTRAVLRKESQIAEHYRRVGQLEERLIEETSKC 120

Query: 121 TTTLTELSNLRTV-----REATVALNVWQPEVIRARQKQIVEQCSVSVDSRLRTLDMELK 180
           TTTLTELSNLRTV     REATVALNVWQPEVIRARQKQIVEQCSVSVDSRLRTLDMELK
Sbjct: 121 TTTLTELSNLRTVRFGRLREATVALNVWQPEVIRARQKQIVEQCSVSVDSRLRTLDMELK 180

Query: 181 LCKQQIAIFRKALKDEKKRLELAKEELTSLKYHPLKDHKSMDSSNNDSHIKRKSKDAINS 238
           LCKQQIAIF+KALKDEKKRLELAKEELTSLKYHPLKDHKSM+SSNNDSHIKR+SKDAIN 
Sbjct: 181 LCKQQIAIFQKALKDEKKRLELAKEELTSLKYHPLKDHKSMNSSNNDSHIKRRSKDAINC 240

[Close]

BLAST of PI0006740 vs. TAIR 10
Match: AT1G08710.1 (F-box family protein )

HSP 1 Score: 216.1 bits (549), Expect = 3.2e-56
Identity = 125/235 (53.19%), Postives = 173/235 (73.62%), Query Frame = 0


Query: 2   SELPDELWTQILQIGVKTYALTYKDLCCVSISSPRLRRLSDDDSLWSHLLSSDYPSS-SS 61
           +E+PDELW +IL+IGVK+   +YKDLCC+SISS RL RLS DDSLW  LL  D+P+   S
Sbjct: 4   NEIPDELWRKILEIGVKSSTFSYKDLCCISISSRRLFRLSCDDSLWDLLLVHDFPNHIVS 63

Query: 62  SFPSSASSSKSLYKIRLERDRYRKKAVHTRAVLRKESQIAEHYRRVGQLEERLMEETSKW 121
           +  SS S +K +Y  R ER++ RK A H RA+LRKES+I+E  RR+ +LE RL +E  + 
Sbjct: 64  ASSSSESPTKFIYMTRFEREKERKLAAHRRALLRKESEISEWGRRIRELEARLSDEAERL 123

Query: 122 TTTLTELSNLRTVREATVALNVWQPEVIRARQKQIVEQCSVSVDSRLRTLDMELKLCKQQ 181
            ++  + S+L  VR+A+VALNVWQPEV+R RQKQ+VEQ +V V+ RLR L+ME+KLCKQQ
Sbjct: 124 QSSSLQFSDLLKVRQASVALNVWQPEVVRGRQKQMVEQNAVPVEGRLRALEMEMKLCKQQ 183

Query: 182 IAIFRKALKDEKKRLELAKEELTSLKYHPLKDHKSMDSSNNDSHIK-RKSKDAIN 235
           I    +AL++ K R ++A +EL S+KYHPL+D+KS+ + +  S+ K +K K +IN
Sbjct: 184 IMGLNRALREVKHRYDIAIKELESMKYHPLRDYKSIRNGDQGSNGKTKKLKTSIN 238

[Close]

BLAST of PI0006740 vs. TAIR 10
Match: AT1G08710.2 (F-box family protein )

HSP 1 Score: 216.1 bits (549), Expect = 3.2e-56
Identity = 125/235 (53.19%), Postives = 173/235 (73.62%), Query Frame = 0


Query: 2   SELPDELWTQILQIGVKTYALTYKDLCCVSISSPRLRRLSDDDSLWSHLLSSDYPSS-SS 61
           +E+PDELW +IL+IGVK+   +YKDLCC+SISS RL RLS DDSLW  LL  D+P+   S
Sbjct: 4   NEIPDELWRKILEIGVKSSTFSYKDLCCISISSRRLFRLSCDDSLWDLLLVHDFPNHIVS 63

Query: 62  SFPSSASSSKSLYKIRLERDRYRKKAVHTRAVLRKESQIAEHYRRVGQLEERLMEETSKW 121
           +  SS S +K +Y  R ER++ RK A H RA+LRKES+I+E  RR+ +LE RL +E  + 
Sbjct: 64  ASSSSESPTKFIYMTRFEREKERKLAAHRRALLRKESEISEWGRRIRELEARLSDEAERL 123

Query: 122 TTTLTELSNLRTVREATVALNVWQPEVIRARQKQIVEQCSVSVDSRLRTLDMELKLCKQQ 181
            ++  + S+L  VR+A+VALNVWQPEV+R RQKQ+VEQ +V V+ RLR L+ME+KLCKQQ
Sbjct: 124 QSSSLQFSDLLKVRQASVALNVWQPEVVRGRQKQMVEQNAVPVEGRLRALEMEMKLCKQQ 183

Query: 182 IAIFRKALKDEKKRLELAKEELTSLKYHPLKDHKSMDSSNNDSHIK-RKSKDAIN 235
           I    +AL++ K R ++A +EL S+KYHPL+D+KS+ + +  S+ K +K K +IN
Sbjct: 184 IMGLNRALREVKHRYDIAIKELESMKYHPLRDYKSIRNGDQGSNGKTKKLKTSIN 238

The following BLAST results are available for this feature:

BLAST of PI0006740 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9CAZ0	4.4e-55	53.19	F-box protein SKIP24 OS=Arabidopsis thaliana OX=3702 GN=SKIP24 PE=1 SV=2	[more]

BLAST of PI0006740 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S4E0S8	2.5e-117	96.30	F-box protein SKIP24 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103495869 PE=4 SV=...	[more]
A0A1S4E0Q4	1.8e-115	94.35	F-box protein SKIP24 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103495869 PE=4 SV=...	[more]
A0A0A0L0S2	1.8e-115	93.83	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G416990 PE=4 SV=1	[more]
A0A5D3CCI3	1.1e-112	93.39	F-box protein SKIP24 isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_...	[more]
A0A1S3C1S8	2.7e-111	93.39	F-box protein SKIP24 isoform X3 OS=Cucumis melo OX=3656 GN=LOC103495869 PE=4 SV=...	[more]

BLAST of PI0006740 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_016901824.1	5.1e-117	96.30	PREDICTED: F-box protein SKIP24 isoform X2 [Cucumis melo]	[more]
XP_016901822.1	3.7e-115	94.35	PREDICTED: F-box protein SKIP24 isoform X1 [Cucumis melo] >XP_016901823.1 PREDIC...	[more]
XP_004144305.1	3.7e-115	93.83	F-box protein SKIP24 isoform X1 [Cucumis sativus]	[more]
TYK09707.1	2.2e-112	93.39	F-box protein SKIP24 isoform X2 [Cucumis melo var. makuwa]	[more]
XP_008455770.1	5.5e-111	93.39	PREDICTED: F-box protein SKIP24 isoform X3 [Cucumis melo]	[more]

BLAST of PI0006740 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G08710.1	3.2e-56	53.19	F-box family protein	[more]
AT1G08710.2	3.2e-56	53.19	F-box family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 99..119
None	No IPR available	COILS	Coil	Coil	coord: 181..208
None	No IPR available	GENE3D	1.20.1280.50		coord: 1..154 e-value: 1.5E-6 score: 30.0
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 208..243
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 208..235
IPR036047	F-box-like domain superfamily	SUPERFAMILY	81383	F-box domain	coord: 1..76

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
PI0006740.1	PI0006740.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0005634	nucleus
cellular_component	GO:0005886	plasma membrane
molecular_function	GO:0005515	protein binding