PI0006158 (gene) Melon (PI 482460) v1

Overview


Name	PI0006158
Type	gene
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	Unknown protein
Location	chr05: 12369923 .. 12370282 (+)
RNA-Seq Expression	PI0006158
Synteny	PI0006158

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCAGCTCCCGCCTCTCCAAGATTATGGTGGTACAGTTCTGTCTCTCCAAGATGAGGACGATGGTGCAGCTCCGCCTCTGCCTCTCCAAAATTATGATGATGGTGCAGCTCCATCTCTGCCTCTCCAAAATGATAATGATGGTGTAGCTCCGCCTTCGCCTGTCTAAAATGATGATGATGGTGCAGCTTCCCCTCTCCAAGATGGCAGTGGTACAAGTCCGTCTCTCCAAGATGATGGTGGTGTAGCTCCGTCCCTCCAAGATAAGAGTGGTGCATCTTCGCCCCTCCAAGATGATAATGGTGTAGCTCCACCTCCGCCTCTCCAAAATGATGATGGTGTAGTGCCCGATCATTCCTAG

mRNA sequence

ATGCAGCTCCCGCCTCTCCAAGATTATGGTGGTACAGTTCTGTCTCTCCAAGATGAGGACGATGGTGCAGCTCCGCCTCTGCCTCTCCAAAATTATGATGATGGTGCAGCTCCATCTCTGCCTCTCCAAAATGATAATGATGCTTCCCCTCTCCAAGATGGCAGTGGTACAAGTCCGTCTCTCCAAGATGATGGTGGTGTAGCTCCGTCCCTCCAAGATAAGAGTGGTGCATCTTCGCCCCTCCAAGATGATAATGGTGTAGCTCCACCTCCGCCTCTCCAAAATGATGATGGTGTAGTGCCCGATCATTCCTAG

Coding sequence (CDS)

ATGCAGCTCCCGCCTCTCCAAGATTATGGTGGTACAGTTCTGTCTCTCCAAGATGAGGACGATGGTGCAGCTCCGCCTCTGCCTCTCCAAAATTATGATGATGGTGCAGCTCCATCTCTGCCTCTCCAAAATGATAATGATGCTTCCCCTCTCCAAGATGGCAGTGGTACAAGTCCGTCTCTCCAAGATGATGGTGGTGTAGCTCCGTCCCTCCAAGATAAGAGTGGTGCATCTTCGCCCCTCCAAGATGATAATGGTGTAGCTCCACCTCCGCCTCTCCAAAATGATGATGGTGTAGTGCCCGATCATTCCTAG

Protein sequence

MQLPPLQDYGGTVLSLQDEDDGAAPPLPLQNYDDGAAPSLPLQNDNDASPLQDGSGTSPSLQDDGGVAPSLQDKSGASSPLQDDNGVAPPPPLQNDDGVVPDHS

Homology

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BLAST of PI0006158 vs. ExPASy TrEMBL
Match: A0A5A7T1T0 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold862G00470 PE=4 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 5.3e-08
Identity = 50/99 (50.51%), Postives = 57/99 (57.58%), Query Frame = 0


Query: 4   PPLQ-DYGGT-VLSLQDEDDGAAPPLPLQNYDD---GAAPSLPLQNDNDA--------SP 63
           PPLQ D G T  L LQD+DDG APPLPLQN DD   G  P L L +D+D         S 
Sbjct: 38  PPLQKDDGATPPLPLQDDDDGIAPPLPLQNDDDDDNGTTPPLQLHDDDDGVVCLHLHLSK 97

Query: 64  LQDGSGTSPSLQDDGGVAP--SLQDKSGASSPLQDDNGV 88
           + DG+     LQ+D G AP  SLQD  G + PLQ D GV
Sbjct: 98  MIDGAAQPLRLQNDYGAAPPSSLQDHGGTALPLQKDGGV 136

[Close]

BLAST of PI0006158 vs. NCBI nr
Match: KAA0035405.1 (uncharacterized protein E6C27_scaffold285G00180 [Cucumis melo var. makuwa] >TYK25750.1 uncharacterized protein E5676_scaffold862G00470 [Cucumis melo var. makuwa])

HSP 1 Score: 67.0 bits (162), Expect = 1.1e-07
Identity = 50/99 (50.51%), Postives = 57/99 (57.58%), Query Frame = 0


Query: 4   PPLQ-DYGGT-VLSLQDEDDGAAPPLPLQNYDD---GAAPSLPLQNDNDA--------SP 63
           PPLQ D G T  L LQD+DDG APPLPLQN DD   G  P L L +D+D         S 
Sbjct: 38  PPLQKDDGATPPLPLQDDDDGIAPPLPLQNDDDDDNGTTPPLQLHDDDDGVVCLHLHLSK 97

Query: 64  LQDGSGTSPSLQDDGGVAP--SLQDKSGASSPLQDDNGV 88
           + DG+     LQ+D G AP  SLQD  G + PLQ D GV
Sbjct: 98  MIDGAAQPLRLQNDYGAAPPSSLQDHGGTALPLQKDGGV 136

The following BLAST results are available for this feature:

BLAST of PI0006158 vs.


Match Name	E-value	Identity	Description

BLAST of PI0006158 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7T1T0	5.3e-08	50.51	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]

BLAST of PI0006158 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0035405.1	1.1e-07	50.51	uncharacterized protein E6C27_scaffold285G00180 [Cucumis melo var. makuwa] >TYK2...	[more]

BLAST of PI0006158 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..104
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 42..65

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
PI0006158.1	PI0006158.1	mRNA