PI0005866 (gene) Melon (PI 482460) v1

Overview


Name	PI0005866
Type	gene
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	Retrotransposon protein
Location	chr08: 6339399 .. 6339752 (-)
RNA-Seq Expression	PI0005866
Synteny	PI0005866

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCAAGTTCTTCACGAGCACCCAAACACACATGGACTAAAGAGGAAGAAGCGAAGTTGGTTGAGTGTTTGGTGGAATTGGTTTCATCTGGCGGGTGGAGGTCAGATAATGGGACATTTCGACCTGGATATTTAGCACAGTTGCAACGGATGATGGCGGAGAAGTTGCCCGACACTAACATCCAAGGATCACCGACTATTGATTGTTGTGTGAAATCCCTCAAGAAAACTTATCAGGCAATTGCAGAAATGAGGGGGCCATCCTGTAGTGGGTTAGGGTGGAATGAAGAATATCAGTGCATCATCGCGGAACACGACTTGTTTGATAATTGGGTCAAGGTACAGTTTATTTAA

mRNA sequence

ATGGCAAGTTCTTCACGAGCACCCAAACACACATGGACTAAAGAGGAAGAAGCGAAGTTGGTTGAGTGTTTGGTGGAATTGGTTTCATCTGGCGGGTGGAGGTCAGATAATGGGACATTTCGACCTGGATATTTAGCACAGTTGCAACGGATGATGGCGGAGAAGTTGCCCGACACTAACATCCAAGGATCACCGACTATTGATTGTTGTGTGAAATCCCTCAAGAAAACTTATCAGGCAATTGCAGAAATGAGGGGGCCATCCTGTAGTGGGTTAGGGTGGAATGAAGAATATCAGTGCATCATCGCGGAACACGACTTGTTTGATAATTGGGTCAAGGTACAGTTTATTTAA

Coding sequence (CDS)

ATGGCAAGTTCTTCACGAGCACCCAAACACACATGGACTAAAGAGGAAGAAGCGAAGTTGGTTGAGTGTTTGGTGGAATTGGTTTCATCTGGCGGGTGGAGGTCAGATAATGGGACATTTCGACCTGGATATTTAGCACAGTTGCAACGGATGATGGCGGAGAAGTTGCCCGACACTAACATCCAAGGATCACCGACTATTGATTGTTGTGTGAAATCCCTCAAGAAAACTTATCAGGCAATTGCAGAAATGAGGGGGCCATCCTGTAGTGGGTTAGGGTGGAATGAAGAATATCAGTGCATCATCGCGGAACACGACTTGTTTGATAATTGGGTCAAGGTACAGTTTATTTAA

Protein sequence

MASSSRAPKHTWTKEEEAKLVECLVELVSSGGWRSDNGTFRPGYLAQLQRMMAEKLPDTNIQGSPTIDCCVKSLKKTYQAIAEMRGPSCSGLGWNEEYQCIIAEHDLFDNWVKVQFI

Homology

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BLAST of PI0005866 vs. ExPASy TrEMBL
Match: A0A5A7U0H7 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold648G002060 PE=4 SV=1)

HSP 1 Score: 214.2 bits (544), Expect = 3.0e-52
Identity = 99/113 (87.61%), Postives = 103/113 (91.15%), Query Frame = 0


Query: 1   MASSSRAPKHTWTKEEEAKLVECLVELVSSGGWRSDNGTFRPGYLAQLQRMMAEKLPDTN 60
           MAS SRAPKHTWTKEEE K VECLVELVSSGGWRSDNGTF+PGYLAQLQRMMAEKLP TN
Sbjct: 1   MASLSRAPKHTWTKEEEEKFVECLVELVSSGGWRSDNGTFQPGYLAQLQRMMAEKLPGTN 60

Query: 61  IQGSPTIDCCVKSLKKTYQAIAEMRGPSCSGLGWNEEYQCIIAEHDLFDNWVK 114
           IQ S TIDC VKSLKKTY AIAEMRGPSCSG GWNEE+QCIIAE DLFD+W+K
Sbjct: 61  IQESSTIDCHVKSLKKTYHAIAEMRGPSCSGFGWNEEFQCIIAERDLFDSWIK 113

[Close]

BLAST of PI0005866 vs. ExPASy TrEMBL
Match: A0A1S3B4L3 (uncharacterized protein LOC103485953 OS=Cucumis melo OX=3656 GN=LOC103485953 PE=4 SV=1)

HSP 1 Score: 214.2 bits (544), Expect = 3.0e-52
Identity = 99/113 (87.61%), Postives = 103/113 (91.15%), Query Frame = 0


Query: 1   MASSSRAPKHTWTKEEEAKLVECLVELVSSGGWRSDNGTFRPGYLAQLQRMMAEKLPDTN 60
           MAS SRAPKHTWTKEEE K VECLVELVSSGGWRSDNGTF+PGYLAQLQRMMAEKLP TN
Sbjct: 1   MASLSRAPKHTWTKEEEEKFVECLVELVSSGGWRSDNGTFQPGYLAQLQRMMAEKLPGTN 60

Query: 61  IQGSPTIDCCVKSLKKTYQAIAEMRGPSCSGLGWNEEYQCIIAEHDLFDNWVK 114
           IQ S TIDC VKSLKKTY AIAEMRGPSCSG GWNEE+QCIIAE DLFD+W+K
Sbjct: 61  IQESSTIDCHVKSLKKTYHAIAEMRGPSCSGFGWNEEFQCIIAERDLFDSWIK 113

[Close]

BLAST of PI0005866 vs. ExPASy TrEMBL
Match: A0A5D3CQS4 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold5G00390 PE=4 SV=1)

HSP 1 Score: 208.4 bits (529), Expect = 1.6e-50
Identity = 98/104 (94.23%), Postives = 101/104 (97.12%), Query Frame = 0


Query: 1   MASSSRAPKHTWTKEEEAKLVECLVELVSSGGWRSDNGTFRPGYLAQLQRMMAEKLPDTN 60
           MASSSRAPKHTWTKEEEAKLVECLVELVS+GGWRS+NGTFRPGYLAQLQRMMAEKLPDTN
Sbjct: 1   MASSSRAPKHTWTKEEEAKLVECLVELVSAGGWRSNNGTFRPGYLAQLQRMMAEKLPDTN 60

Query: 61  IQGSPTIDCCVKSLKKTYQAIAEMRGPSCSGLGWNEEYQCIIAE 105
           IQGSPTID  VKSLKKTYQAIAEMRGPSCSG GWNEE+QCIIAE
Sbjct: 61  IQGSPTIDYRVKSLKKTYQAIAEMRGPSCSGFGWNEEFQCIIAE 104

[Close]

BLAST of PI0005866 vs. ExPASy TrEMBL
Match: A0A5A7TJS2 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold335G00710 PE=4 SV=1)

HSP 1 Score: 192.2 bits (487), Expect = 1.2e-45
Identity = 90/113 (79.65%), Postives = 97/113 (85.84%), Query Frame = 0


Query: 1   MASSSRAPKHTWTKEEEAKLVECLVELVSSGGWRSDNGTFRPGYLAQLQRMMAEKLPDTN 60
           M SSSRA KHTWTKEEEAKLVECLVELVS+GGWRS+NGTFR GYLAQLQRMM +KL DTN
Sbjct: 172 MTSSSRASKHTWTKEEEAKLVECLVELVSAGGWRSNNGTFRHGYLAQLQRMMVKKLSDTN 231

Query: 61  IQGSPTIDCCVKSLKKTYQAIAEMRGPSCSGLGWNEEYQCIIAEHDLFDNWVK 114
           IQGS  +DC VKSLKK   +   MRGPSCSG GWNE++QCIIAE DLFDNWVK
Sbjct: 232 IQGSLPMDCRVKSLKKHLPSNFRMRGPSCSGFGWNEKFQCIIAERDLFDNWVK 284

[Close]

BLAST of PI0005866 vs. ExPASy TrEMBL
Match: A0A5D3D8J6 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold307G00030 PE=4 SV=1)

HSP 1 Score: 190.3 bits (482), Expect = 4.6e-45
Identity = 89/113 (78.76%), Postives = 97/113 (85.84%), Query Frame = 0


Query: 1   MASSSRAPKHTWTKEEEAKLVECLVELVSSGGWRSDNGTFRPGYLAQLQRMMAEKLPDTN 60
           M SSSRA KHTWTKEEEAKLVECLVELVS+GGWRS+NGTFR GYLAQLQRMM +KL DTN
Sbjct: 172 MTSSSRASKHTWTKEEEAKLVECLVELVSAGGWRSNNGTFRLGYLAQLQRMMVKKLSDTN 231

Query: 61  IQGSPTIDCCVKSLKKTYQAIAEMRGPSCSGLGWNEEYQCIIAEHDLFDNWVK 114
           IQGS  +DC VKSLKK   +   +RGPSCSG GWNE++QCIIAE DLFDNWVK
Sbjct: 232 IQGSLPMDCRVKSLKKHLPSNFRIRGPSCSGFGWNEKFQCIIAERDLFDNWVK 284

[Close]

BLAST of PI0005866 vs. NCBI nr
Match: XP_008441954.1 (PREDICTED: uncharacterized protein LOC103485953 [Cucumis melo] >KAA0047736.1 retrotransposon protein [Cucumis melo var. makuwa] >TYK08388.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 214.2 bits (544), Expect = 6.2e-52
Identity = 99/113 (87.61%), Postives = 103/113 (91.15%), Query Frame = 0


Query: 1   MASSSRAPKHTWTKEEEAKLVECLVELVSSGGWRSDNGTFRPGYLAQLQRMMAEKLPDTN 60
           MAS SRAPKHTWTKEEE K VECLVELVSSGGWRSDNGTF+PGYLAQLQRMMAEKLP TN
Sbjct: 1   MASLSRAPKHTWTKEEEEKFVECLVELVSSGGWRSDNGTFQPGYLAQLQRMMAEKLPGTN 60

Query: 61  IQGSPTIDCCVKSLKKTYQAIAEMRGPSCSGLGWNEEYQCIIAEHDLFDNWVK 114
           IQ S TIDC VKSLKKTY AIAEMRGPSCSG GWNEE+QCIIAE DLFD+W+K
Sbjct: 61  IQESSTIDCHVKSLKKTYHAIAEMRGPSCSGFGWNEEFQCIIAERDLFDSWIK 113

[Close]

BLAST of PI0005866 vs. NCBI nr
Match: KAA0066605.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYK14213.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 208.4 bits (529), Expect = 3.4e-50
Identity = 98/104 (94.23%), Postives = 101/104 (97.12%), Query Frame = 0


Query: 1   MASSSRAPKHTWTKEEEAKLVECLVELVSSGGWRSDNGTFRPGYLAQLQRMMAEKLPDTN 60
           MASSSRAPKHTWTKEEEAKLVECLVELVS+GGWRS+NGTFRPGYLAQLQRMMAEKLPDTN
Sbjct: 1   MASSSRAPKHTWTKEEEAKLVECLVELVSAGGWRSNNGTFRPGYLAQLQRMMAEKLPDTN 60

Query: 61  IQGSPTIDCCVKSLKKTYQAIAEMRGPSCSGLGWNEEYQCIIAE 105
           IQGSPTID  VKSLKKTYQAIAEMRGPSCSG GWNEE+QCIIAE
Sbjct: 61  IQGSPTIDYRVKSLKKTYQAIAEMRGPSCSGFGWNEEFQCIIAE 104

[Close]

BLAST of PI0005866 vs. NCBI nr
Match: KAA0043564.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 192.2 bits (487), Expect = 2.5e-45
Identity = 90/113 (79.65%), Postives = 97/113 (85.84%), Query Frame = 0


Query: 1   MASSSRAPKHTWTKEEEAKLVECLVELVSSGGWRSDNGTFRPGYLAQLQRMMAEKLPDTN 60
           M SSSRA KHTWTKEEEAKLVECLVELVS+GGWRS+NGTFR GYLAQLQRMM +KL DTN
Sbjct: 172 MTSSSRASKHTWTKEEEAKLVECLVELVSAGGWRSNNGTFRHGYLAQLQRMMVKKLSDTN 231

Query: 61  IQGSPTIDCCVKSLKKTYQAIAEMRGPSCSGLGWNEEYQCIIAEHDLFDNWVK 114
           IQGS  +DC VKSLKK   +   MRGPSCSG GWNE++QCIIAE DLFDNWVK
Sbjct: 232 IQGSLPMDCRVKSLKKHLPSNFRMRGPSCSGFGWNEKFQCIIAERDLFDNWVK 284

[Close]

BLAST of PI0005866 vs. NCBI nr
Match: TYK19779.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 190.3 bits (482), Expect = 9.6e-45
Identity = 89/113 (78.76%), Postives = 97/113 (85.84%), Query Frame = 0


Query: 1   MASSSRAPKHTWTKEEEAKLVECLVELVSSGGWRSDNGTFRPGYLAQLQRMMAEKLPDTN 60
           M SSSRA KHTWTKEEEAKLVECLVELVS+GGWRS+NGTFR GYLAQLQRMM +KL DTN
Sbjct: 172 MTSSSRASKHTWTKEEEAKLVECLVELVSAGGWRSNNGTFRLGYLAQLQRMMVKKLSDTN 231

Query: 61  IQGSPTIDCCVKSLKKTYQAIAEMRGPSCSGLGWNEEYQCIIAEHDLFDNWVK 114
           IQGS  +DC VKSLKK   +   +RGPSCSG GWNE++QCIIAE DLFDNWVK
Sbjct: 232 IQGSLPMDCRVKSLKKHLPSNFRIRGPSCSGFGWNEKFQCIIAERDLFDNWVK 284

[Close]

BLAST of PI0005866 vs. NCBI nr
Match: KAA0036099.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 187.2 bits (474), Expect = 8.1e-44
Identity = 80/117 (68.38%), Postives = 101/117 (86.32%), Query Frame = 0


Query: 1   MASSSRAPKHTWTKEEEAKLVECLVELVSSGGWRSDNGTFRPGYLAQLQRMMAEKLPDTN 60
           M++S+RAP+H WT+EEE  LVECL+ELVS GGW+SDNGTFRPGYLAQL RMMAEKLP   
Sbjct: 1   MSTSNRAPRHVWTREEEGTLVECLMELVSMGGWKSDNGTFRPGYLAQLVRMMAEKLPGCQ 60

Query: 61  IQGSPTIDCCVKSLKKTYQAIAEMRGPSCSGLGWNEEYQCIIAEHDLFDNWVKVQFI 118
           ++ +  IDC +K+LK+T+QAIAEMRGP+CSG GWN+E +CI+AE +LFDNWV+V+ I
Sbjct: 61  VRATTVIDCRIKTLKRTFQAIAEMRGPACSGFGWNDEEKCIVAEKELFDNWVRVRNI 117

The following BLAST results are available for this feature:

BLAST of PI0005866 vs.


Match Name	E-value	Identity	Description

BLAST of PI0005866 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7U0H7	3.0e-52	87.61	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A1S3B4L3	3.0e-52	87.61	uncharacterized protein LOC103485953 OS=Cucumis melo OX=3656 GN=LOC103485953 PE=...	[more]
A0A5D3CQS4	1.6e-50	94.23	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7TJS2	1.2e-45	79.65	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5D3D8J6	4.6e-45	78.76	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]

BLAST of PI0005866 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008441954.1	6.2e-52	87.61	PREDICTED: uncharacterized protein LOC103485953 [Cucumis melo] >KAA0047736.1 ret...	[more]
KAA0066605.1	3.4e-50	94.23	retrotransposon protein [Cucumis melo var. makuwa] >TYK14213.1 retrotransposon p...	[more]
KAA0043564.1	2.5e-45	79.65	retrotransposon protein [Cucumis melo var. makuwa]	[more]
TYK19779.1	9.6e-45	78.76	retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0036099.1	8.1e-44	68.38	retrotransposon protein [Cucumis melo var. makuwa]	[more]

BLAST of PI0005866 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR024752	Myb/SANT-like domain	PFAM	PF12776	Myb_DNA-bind_3	coord: 11..110 e-value: 4.7E-6 score: 27.5
None	No IPR available	PANTHER	PTHR46250	MYB/SANT-LIKE DNA-BINDING DOMAIN PROTEIN-RELATED	coord: 3..114
None	No IPR available	PANTHER	PTHR46250:SF3	MYB/SANT-LIKE DNA-BINDING DOMAIN PROTEIN	coord: 3..114

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
PI0005866.1	PI0005866.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane