PI0004960 (gene) Melon (PI 482460) v1

Overview


Name	PI0004960
Type	gene
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	Gag-pol polyprotein
Location	chr11: 13528063 .. 13532780 (+)
RNA-Seq Expression	PI0004960
Synteny	PI0004960

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACACGTGGCAGGCAGACAAACGGGCGGATGAGCGCGCGTTGCGGGTCGGACGAGCGCGCTTCGTGGGTCGCAAAAAATGAAGGAAAAAAAGGTGTTGCACATCGGATTCGAACTTGTGACCTTGAAGCGGGTGCGTGGCGCGCTGCGGGAGTGACACGTGTCGCTCTGTGAGTTGTCTGATTCTTTTTAATTTCTCGGTTTTGCCTTCGAACTTGCTTTCGTCCGTTCTTCTTCGTTAGAACTCCGATTTAGGTGATTTTAGTGGCGTTGGACTCGTATCGGAGTCTAGTTTCATATTCTACACAAAATTAAAATAGTGAATATATGAATGTTATGAATACGAAATAAAGTATATTTAAAAGGGTCAATAATTGTCCCAACAACTGGCTAAACCCTTTAGACCGAGCTAATCAACATTCGTTAACGAACGGGTCATTCCACTAAAGTTTCATAGTTCCACTTTCCTCACTATAGATATATTTCTACCATCTGATATAACCATGATCAGTAAGTTAATCCTTCACAAGTTGTTTGTAACCTCAGTTAGGTCAAATTACCGTTTTACCCCCAAGACTACATTTTGCTTCTTAAGTCCATTAATTCACTATTGAACAATTGGTTTAAGGTCCAACCTGTTGGATCATGTTGTCTTTTACCTTTTATGGTTCCTTCCTTTTGTGGTTAATTACCTTTCTTACTGCCTTTTTATTACAGATTTTATTGTGAAGATTTTTTCCTTCCTTGCTTTATTACCGTTGTCAAAGACTCATTATTCTTGATTAATACTTTTCCTTAACTGTGATTGTTTTCTTGATGATGTTTTGTTCTTAGCTTATTTATTTGATGTTGCCCTTTCGTTTTGGTCATGCAGATTGTTTTTCTTGTGATTGAAAACATTTTTACTGAGCTAATATTCTGCATATGTGATAATCTATTTTCTCTATTCAAGTTGTTATATTGTTGTATCCTGTGTTGAGACATCCTGTTCAACATCCTTGACGAATAAGAAGAGATCACGTATTTAGGGGAAGCCTAAATACTTCATAATTCTAGAGTGTTGAATTCAGGGGAAGCCTGACTATTCAGAGGAGAGTCAACCAAGAAGCAACTACTTAGGAAGTGCCTAAGTATTCGAAGACGAATCTTTTTGTAATCAAGATCGATAAAAGCGATAAGTTGTTTTCTTGTAATCCTTATCTTACATTCTAGTGAACTATCTTCTTATTGGGCCTAGCCCCCCAGACGTAGGTGTGATCACCGAATTGGGTTACCAATTCCGTGTGTTATATTTCTCTCTTAACTCTCCTCTTTTATATCCAGCTAATTGTGCATGTTGTTATAACATAAGAACCAACAAATTACACAATATCTAACAATCACTGTTTTATCAATTGGTATCAGAGCAGGTTCGATACATTATATCATGGAAACTATTGGGGAAGGAAGATCTACTACCAGACCACCTGTTCTGGACGAATCTAATTATGCGTACTGGAAAGCAAGGATGACTGCTTTTCTCAAATCTATTGACAGAAAAACCTGGAAGGCTATCATTGTAAGATGGACTCATCCAACTTCTATTAATGAGGAAGGAGTTGAAATTCTTAAACCTGAGAAAGACTAGAACGATGTAGAGGATGAAGTTGCACTAGAAAATTCTCGTGCCTTGAATGCATTGTTCAATGGAGTTGATCAAAATACCTTCAAACTCATAAACACGTGTACCTCTGCTGCTGATGCTTGGCAAATACTGGTTGTGGCACATGAAGGAACTACAAAGGTCAAAATGTCTCGACTTCAAATATTATCTTCTAAATTTGAAAATCTTAAAATGCAGGAAGACGAGACCATAGCTGAATATCATGTGAAGATTCGCGATATTGCAAATGAATCTTTCTCATTAGGAGAAAAATTAACTGATGAAAAATTAGTCCGAAAAGTCTTGAGATCTCTTCCCAAAAGATTTAACATGAAAGTTACAGCTATAGAAGAGGCGAATGACATTTCATCAATGAAGCTGGATGAGCTCATTGGGTCCCTGCTAACTTTCGAATTAAGTCTTGATGAAAGTACTGAGTCCAAAGGTAAGGGAATAGCTTTACAAAGTGTGAGTACTGATGATTTTTCTGCAAGTAAAAATAAAGATGCTGATGAGGGTCTTGCTGAGTCTCTTGTTCTTTTAACTAAACAATTTACTCGAGCTGTAAAACGTTTAAATAGAAGACCTATGAATTATGGATCTGCCTCTGGTCGTGAAAATCAAAACAAGTTCAGAAACTTCTTTTCCAGAAGAAAAGAAAATGAGCGAAATAATGATTTCAAAAGAGAAAAAGATTTCAAATGTAGAGAATGTGGTGGTAAAGGGCATTATTAATCTGAGTGTGCTACTTTTCTGAGACGACAACACAAATGGTACTCAGTCACATTATCTGATGATGAATCTGAGACAAGTCATGACTCGAGGATGAGGTAAGAGATTTAGTTGCTTTATCTACATTTGAAACTAATGAATCTATTGCAGGTGATGACAATTCTCTAAGTATTCTTGAAAGAAAACTGGAGGAAGTCATTAAGAAGTGGCAGGAGGACCTATATGTTCTTGAACAACAAAAGAACAGAATTCTTGAACTGGTTGAGGACAATCACAGATTATTACAAACCATTTCAGACATAAAAAAGGAGTTGAAAAGTGCCAAAAGTGAAAATGATCGAATGTCCAAATCTGTTTGGATGCTCAATTCAGGAACAAAAGACTTGAATCACATACTGAGTTCGGAAAAATCTATTTCTAACAAACAAGGTATAGGATTTGATAACAAGAACAAATCCACAAACAACTCTACTCAAACTATTTTTGTTCCTGCTCAAAACCTGGGAAATCTGATTCCAAATTTTGAAGCCAATGGTTTATATTCTAAACAACCATCTACATTACAGGTAAGGAATAGATGGATATGTCATTATTGTGGCAGTGTGGGTCACAAACGACCTTTTTGTTACAAGCTGTATGGGAAACCTTACAGAATCCAAAGGAACAATGTCACTGAAAGCACTCCAAAACAAGTCTTGCGGATTAAAAATCATCAGTGTAATGTTGCTCTAACTACTATTCACTCATTTTCTGAATCTGTTGATTTTTCGATAGTGGTTGCTCTAGACATATGACAGGTGTAAGCTTGTTTATTTTCACTCTGCACAAATGTAATTCAAGTCCAGTTACTTTTGGTGATGGTGCGCATGGTAGAGTTCTTGGCAAAGGAGATGTTAATCAACCAAATCTGCCTCCTCTACATGATGTTAGACTAGTGGAAGGGTTAACTGAAAATCTGATTAGCATCAGTCAATTATGCGACCAGGGATTCCAAGTAAGTTTCTAAAAAAATGAATGTCTTGTTAAAAATGATGATGGTACCATTGTTATGACAGGAACCAGACGTGCGGATAACTGCTATCACTGAATTCCTAAGTATTCAAAAAGTGAATGCCTACTATCTAAAAATGATGAAACTGATATTTGGCATCGTCGCTTAGGACATTTGAATTTAAGATCTATTCAAAAAGTTATCTCTTATGATGCGGTTTTTGGTATACCTCCCTTAAAAACCAATCTAGAAACTTTCTGTGGAGATTGTCAAATAGGAAAACAAGTCAAGTCGTCACATACAAGTGTAAGTCATTGTACTACCAACAGGGTTCTGGAACTTCTCCATATCGATCTAATGGGACCAATGCAAGTAGAAAGTCTTGGCGGGAAAAGGTATGTTCTTGTCTGTGTGGATGATTTTTCCAGATATACATGGGTAAGATTTATCAAAGATAAATCAGAAACCTTCAAAAAATGTCAGACACTATGTCTTCAACTTCAACGCCAACAAGGAAAAAATATTATTAGAATTCGTACGGATCATGGAAGAGAATTTGAGAACAAGCCTTTTCATTCTTTCTGTGCCTCTGAAGGGATATCTCATGAGTTCTTAGCTCCCATTACACCACAGCAAAACGGAATAGTTGAGCGCAAAAATAGAACTCTTCAAGAAATGGCAAGAGTGATGCTACATGCCAAACAGATTCCTATGCGTTTTTGGGCAGAAGCTTTGAACACAGCTTGTCACATTCACAATCGAATCTCACTTAGACCAGGAACAACTACCACTATATATTAGGTTTGGAAAGGTAAACAACCCAATATTAAATATTTTCATGTGTTTGGAAGTTCTTGTTTCATTCTTATAGACAGGGATTATCGACGCAAATGGGATTCAAAATCTGATGAAGGCATTTTCTTAGGATACTCTCATACCAGCAGAGCTTTTCGGGTTTACAACATTCGTACCAAGAAAGTTATGGAATCACACAATGTGGTAGTGAATGATTTCTCACAGAATGATTCAAAAGAAGAGGATGACATCATGTCATTTACTCCTAACAAAAGGCCACAATCCAGAGATACAACATCTCAAAACAATTCTGATCAAATTCAAGGATCATCAAGTATCAATAATGTTATTCCTGTTAATCATTATGTTACTGACACAGGTTCCAACAGTGAACACCAATCAACTCTCTCAGAAAGAGATGATGAACTTCATTTTCCTGATTGTGCACCTTCAACTAGAGTACAAAAGAACCATCCTACCAGTGACATTATAGGTCCTTTAGATTCAGGTGTTACTACCAGAAGAAAGGAAAAACTAGATTATGTAGATCATTTTTAG

mRNA sequence

ATGACACGTGGCAGGCAGACAAACGGGCGGATGAGCGCGCGTTGCGGGTCGGACGAGCGCGCTTCGTGGGTCGCAAAAAATGAAGGAAAAAAAGGTGTTGCACATCGGATTCGAACTTGTGACCTTGAAGCGGGTGATGACAATTCTCTAAGTATTCTTGAAAGAAAACTGGAGGAAGTCATTAAGAAGTGGCAGGAGGACCTATATGTTCTTGAACAACAAAAGAACAGAATTCTTGAACTGGTTGAGGACAATCACAGATTATTACAAACCATTTCAGACATAAAAAAGGAGTTGAAAAGTGCCAAAAGTGAAAATGATCGAATGTCCAAATCTGTTTGGATGCTCAATTCAGGAACAAAAGACTTGAATCACATACTGAGTTCGGAAAAATCTATTTCTAACAAACAAGGTTCCAACAGTGAACACCAATCAACTCTCTCAGAAAGAGATGATGAACTTCATTTTCCTGATTGTGCACCTTCAACTAGAGTACAAAAGAACCATCCTACCAGTGACATTATAGGTCCTTTAGATTCAGGTGTTACTACCAGAAGAAAGGAAAAACTAGATTATGTAGATCATTTTTAG

Coding sequence (CDS)

ATGACACGTGGCAGGCAGACAAACGGGCGGATGAGCGCGCGTTGCGGGTCGGACGAGCGCGCTTCGTGGGTCGCAAAAAATGAAGGAAAAAAAGGTGTTGCACATCGGATTCGAACTTGTGACCTTGAAGCGGGTGATGACAATTCTCTAAGTATTCTTGAAAGAAAACTGGAGGAAGTCATTAAGAAGTGGCAGGAGGACCTATATGTTCTTGAACAACAAAAGAACAGAATTCTTGAACTGGTTGAGGACAATCACAGATTATTACAAACCATTTCAGACATAAAAAAGGAGTTGAAAAGTGCCAAAAGTGAAAATGATCGAATGTCCAAATCTGTTTGGATGCTCAATTCAGGAACAAAAGACTTGAATCACATACTGAGTTCGGAAAAATCTATTTCTAACAAACAAGGTTCCAACAGTGAACACCAATCAACTCTCTCAGAAAGAGATGATGAACTTCATTTTCCTGATTGTGCACCTTCAACTAGAGTACAAAAGAACCATCCTACCAGTGACATTATAGGTCCTTTAGATTCAGGTGTTACTACCAGAAGAAAGGAAAAACTAGATTATGTAGATCATTTTTAG

Protein sequence

MTRGRQTNGRMSARCGSDERASWVAKNEGKKGVAHRIRTCDLEAGDDNSLSILERKLEEVIKKWQEDLYVLEQQKNRILELVEDNHRLLQTISDIKKELKSAKSENDRMSKSVWMLNSGTKDLNHILSSEKSISNKQGSNSEHQSTLSERDDELHFPDCAPSTRVQKNHPTSDIIGPLDSGVTTRRKEKLDYVDHF

Homology

[Close]

BLAST of PI0004960 vs. ExPASy TrEMBL
Match: A0A5D3D6G0 (Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold522G00790 PE=4 SV=1)

HSP 1 Score: 73.2 bits (178), Expect = 1.4e-09
Identity = 61/194 (31.44%), Postives = 97/194 (50.00%), Query Frame = 0


Query: 3   RGRQTNGRMSARCGSDERAS--WVAKNEGKKGV----------AHRIRTCDLEAGDDNSL 62
           R R  NG       + +R S  ++ K E K+ V          A  IR  D    DD+  
Sbjct: 223 RRRNDNGPTRRNNENFDRRSDGYLKKKEDKESVDSRDDDGNINAFAIRITDENTDDDSEC 282

Query: 63  SILER----KLEEVIKKWQEDLYVLEQQKNRILELVEDNHRLLQTISDIKKELKSAKSEN 122
           S+  +     +E++   W+ED      QK+RI +L+E+N RL+  IS +K +L+  ++EN
Sbjct: 283 SVESKNDKLSIEKLETLWKEDCEARAIQKDRIQDLLEENERLMSVISSLKLKLREVQNEN 342

Query: 123 DRMSKSVWMLNSGTKDLNHILSSEKSISNKQGSNSEHQSTLSERDDELHFPDCAPSTRVQ 181
           D++ KSV MLNSGTK+L+ IL +E + S++ G      ++ SE   E+ F   +      
Sbjct: 343 DQILKSVKMLNSGTKNLDSILKAEHNGSHRYGLGFVASASSSEATSEIKFVSASMRVEYD 402

[Close]

BLAST of PI0004960 vs. ExPASy TrEMBL
Match: A0A5A7UJA4 (Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold190G001270 PE=4 SV=1)

HSP 1 Score: 73.2 bits (178), Expect = 1.4e-09
Identity = 61/194 (31.44%), Postives = 97/194 (50.00%), Query Frame = 0


Query: 3   RGRQTNGRMSARCGSDERAS--WVAKNEGKKGV----------AHRIRTCDLEAGDDNSL 62
           R R  NG       + +R S  ++ K E K+ V          A  IR  D    DD+  
Sbjct: 223 RRRNDNGPTRRNNENFDRRSDGYLKKKEDKESVDSRDDDGNINAFAIRITDENTDDDSEC 282

Query: 63  SILER----KLEEVIKKWQEDLYVLEQQKNRILELVEDNHRLLQTISDIKKELKSAKSEN 122
           S+  +     +E++   W+ED      QK+RI +L+E+N RL+  IS +K +L+  ++EN
Sbjct: 283 SVESKNDKLSIEKLETLWKEDCEARAIQKDRIQDLLEENERLMSVISSLKLKLREVQNEN 342

Query: 123 DRMSKSVWMLNSGTKDLNHILSSEKSISNKQGSNSEHQSTLSERDDELHFPDCAPSTRVQ 181
           D++ KSV MLNSGTK+L+ IL +E + S++ G      ++ SE   E+ F   +      
Sbjct: 343 DQILKSVKMLNSGTKNLDSILKAEHNGSHRYGLGFVASASSSEATSEIKFVSASMRVEYD 402

[Close]

BLAST of PI0004960 vs. ExPASy TrEMBL
Match: A0A5D3BQY7 (Putative envelope-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold451G001670 PE=4 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 2.4e-09
Identity = 45/95 (47.37%), Postives = 64/95 (67.37%), Query Frame = 0


Query: 57  LEEVIKKWQEDLYVLEQQKNRILELVEDNHRLLQTISDIKKELKSAKSENDRMSKSVWML 116
           LEEV+  W+ED  VL QQ+ +I+ L ++N RL++ IS++K ELK+AK E D ++KSV ML
Sbjct: 94  LEEVLSMWEEDQKVLNQQQEKIMILTKENLRLMEKISELKDELKNAKKEYDTLNKSVRML 153

Query: 117 NSGTKDLNHILSSEKSISNKQG---SNSEHQSTLS 149
           + GT  L+ ILS EK  ++K+G   S  E   T S
Sbjct: 154 SLGTSTLDEILSKEKVKNDKKGIGYSKGEFSKTKS 188

[Close]

BLAST of PI0004960 vs. ExPASy TrEMBL
Match: A0A5A7TJI2 (Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold95G00680 PE=4 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 3.1e-09
Identity = 54/146 (36.99%), Postives = 84/146 (57.53%), Query Frame = 0


Query: 34  AHRIRTCDLEAGDDNSLSILERKLEEV-IKK----WQEDLYVLEQQKNRILELVEDNHRL 93
           A  IR  D E  DD+S  ++ERK +E+ I+K    W+ED      QK RI +L+E+N RL
Sbjct: 237 AFTIRITD-ENTDDDSECLVERKNDELSIEKLETLWKEDCEARAIQKERIQDLLEENERL 296

Query: 94  LQTISDIKKELKSAKSENDRMSKSVWMLNSGTKDLNHILSSEKSISNKQGSNSEHQSTLS 153
           +  IS +K +LK  +++ND + KSV MLNSGT++L+ IL +E + S++ G      ++ S
Sbjct: 297 MSVISSLKLKLKEIQNKNDHILKSVKMLNSGTENLDSILKAEHNGSHRYGLGFVASASSS 356

Query: 154 ERDDELHFPDCAPSTRVQKNHPTSDI 175
           +   E+ F   +        H  +DI
Sbjct: 357 KATSEIKFVSASMRVEYDTIHTETDI 381

[Close]

BLAST of PI0004960 vs. ExPASy TrEMBL
Match: A0A5A7UDB5 (Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold1192G00250 PE=4 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 7.6e-08
Identity = 49/151 (32.45%), Postives = 80/151 (52.98%), Query Frame = 0


Query: 34  AHRIRTCDLEAGDDNSLSILERKLEEVIKK----WQEDLYVLEQQKNRILELVEDNHRLL 93
           A  IR  D    DD+  S+  +  E +I+K    W+ED      QK RI +L+E+N RL+
Sbjct: 328 AFTIRITDENTDDDSECSVESKNDELLIEKLETLWKEDCEARTIQKERIQDLLEENERLM 387

Query: 94  QTISDIKKELKSAKSENDRMSKSVWMLNSGTKDLNHILSSEKSISNKQGSNSEHQSTLSE 153
             IS +K +L+  ++END++ KS  MLNSGT++L+ IL +  + S++ G      ++ S+
Sbjct: 388 SVISSLKLKLREVQNENDQILKSAKMLNSGTENLDSILKAGHNGSHRFGLGFVASASSSK 447

Query: 154 RDDELHFPDCAPSTRVQKNHPTSDIIGPLDS 181
              E+ F   +        H  + I  P+ S
Sbjct: 448 ATSEIKFVPASMRVEYDTIHIETGIRTPIKS 478

[Close]

BLAST of PI0004960 vs. NCBI nr
Match: KAA0053561.1 (gag-pol polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 73.2 bits (178), Expect = 2.9e-09
Identity = 61/194 (31.44%), Postives = 97/194 (50.00%), Query Frame = 0


Query: 3   RGRQTNGRMSARCGSDERAS--WVAKNEGKKGV----------AHRIRTCDLEAGDDNSL 62
           R R  NG       + +R S  ++ K E K+ V          A  IR  D    DD+  
Sbjct: 223 RRRNDNGPTRRNNENFDRRSDGYLKKKEDKESVDSRDDDGNINAFAIRITDENTDDDSEC 282

Query: 63  SILER----KLEEVIKKWQEDLYVLEQQKNRILELVEDNHRLLQTISDIKKELKSAKSEN 122
           S+  +     +E++   W+ED      QK+RI +L+E+N RL+  IS +K +L+  ++EN
Sbjct: 283 SVESKNDKLSIEKLETLWKEDCEARAIQKDRIQDLLEENERLMSVISSLKLKLREVQNEN 342

Query: 123 DRMSKSVWMLNSGTKDLNHILSSEKSISNKQGSNSEHQSTLSERDDELHFPDCAPSTRVQ 181
           D++ KSV MLNSGTK+L+ IL +E + S++ G      ++ SE   E+ F   +      
Sbjct: 343 DQILKSVKMLNSGTKNLDSILKAEHNGSHRYGLGFVASASSSEATSEIKFVSASMRVEYD 402

[Close]

BLAST of PI0004960 vs. NCBI nr
Match: TYK19154.1 (gag-pol polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 73.2 bits (178), Expect = 2.9e-09
Identity = 61/194 (31.44%), Postives = 97/194 (50.00%), Query Frame = 0


Query: 3   RGRQTNGRMSARCGSDERAS--WVAKNEGKKGV----------AHRIRTCDLEAGDDNSL 62
           R R  NG       + +R S  ++ K E K+ V          A  IR  D    DD+  
Sbjct: 223 RRRNDNGPTRRNNENFDRRSDGYLKKKEDKESVDSRDDDGNINAFAIRITDENTDDDSEC 282

Query: 63  SILER----KLEEVIKKWQEDLYVLEQQKNRILELVEDNHRLLQTISDIKKELKSAKSEN 122
           S+  +     +E++   W+ED      QK+RI +L+E+N RL+  IS +K +L+  ++EN
Sbjct: 283 SVESKNDKLSIEKLETLWKEDCEARAIQKDRIQDLLEENERLMSVISSLKLKLREVQNEN 342

Query: 123 DRMSKSVWMLNSGTKDLNHILSSEKSISNKQGSNSEHQSTLSERDDELHFPDCAPSTRVQ 181
           D++ KSV MLNSGTK+L+ IL +E + S++ G      ++ SE   E+ F   +      
Sbjct: 343 DQILKSVKMLNSGTKNLDSILKAEHNGSHRYGLGFVASASSSEATSEIKFVSASMRVEYD 402

[Close]

BLAST of PI0004960 vs. NCBI nr
Match: TYK01584.1 (putative envelope-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 72.4 bits (176), Expect = 4.9e-09
Identity = 45/95 (47.37%), Postives = 64/95 (67.37%), Query Frame = 0


Query: 57  LEEVIKKWQEDLYVLEQQKNRILELVEDNHRLLQTISDIKKELKSAKSENDRMSKSVWML 116
           LEEV+  W+ED  VL QQ+ +I+ L ++N RL++ IS++K ELK+AK E D ++KSV ML
Sbjct: 94  LEEVLSMWEEDQKVLNQQQEKIMILTKENLRLMEKISELKDELKNAKKEYDTLNKSVRML 153

Query: 117 NSGTKDLNHILSSEKSISNKQG---SNSEHQSTLS 149
           + GT  L+ ILS EK  ++K+G   S  E   T S
Sbjct: 154 SLGTSTLDEILSKEKVKNDKKGIGYSKGEFSKTKS 188

[Close]

BLAST of PI0004960 vs. NCBI nr
Match: KAA0041781.1 (gag-pol polyprotein [Cucumis melo var. makuwa] >TYK27069.1 gag-pol polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 72.0 bits (175), Expect = 6.4e-09
Identity = 54/146 (36.99%), Postives = 84/146 (57.53%), Query Frame = 0


Query: 34  AHRIRTCDLEAGDDNSLSILERKLEEV-IKK----WQEDLYVLEQQKNRILELVEDNHRL 93
           A  IR  D E  DD+S  ++ERK +E+ I+K    W+ED      QK RI +L+E+N RL
Sbjct: 237 AFTIRITD-ENTDDDSECLVERKNDELSIEKLETLWKEDCEARAIQKERIQDLLEENERL 296

Query: 94  LQTISDIKKELKSAKSENDRMSKSVWMLNSGTKDLNHILSSEKSISNKQGSNSEHQSTLS 153
           +  IS +K +LK  +++ND + KSV MLNSGT++L+ IL +E + S++ G      ++ S
Sbjct: 297 MSVISSLKLKLKEIQNKNDHILKSVKMLNSGTENLDSILKAEHNGSHRYGLGFVASASSS 356

Query: 154 ERDDELHFPDCAPSTRVQKNHPTSDI 175
           +   E+ F   +        H  +DI
Sbjct: 357 KATSEIKFVSASMRVEYDTIHTETDI 381

[Close]

BLAST of PI0004960 vs. NCBI nr
Match: KAA0053200.1 (gag-pol polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 67.4 bits (163), Expect = 1.6e-07
Identity = 49/151 (32.45%), Postives = 80/151 (52.98%), Query Frame = 0


Query: 34  AHRIRTCDLEAGDDNSLSILERKLEEVIKK----WQEDLYVLEQQKNRILELVEDNHRLL 93
           A  IR  D    DD+  S+  +  E +I+K    W+ED      QK RI +L+E+N RL+
Sbjct: 328 AFTIRITDENTDDDSECSVESKNDELLIEKLETLWKEDCEARTIQKERIQDLLEENERLM 387

Query: 94  QTISDIKKELKSAKSENDRMSKSVWMLNSGTKDLNHILSSEKSISNKQGSNSEHQSTLSE 153
             IS +K +L+  ++END++ KS  MLNSGT++L+ IL +  + S++ G      ++ S+
Sbjct: 388 SVISSLKLKLREVQNENDQILKSAKMLNSGTENLDSILKAGHNGSHRFGLGFVASASSSK 447

Query: 154 RDDELHFPDCAPSTRVQKNHPTSDIIGPLDS 181
              E+ F   +        H  + I  P+ S
Sbjct: 448 ATSEIKFVPASMRVEYDTIHIETGIRTPIKS 478

The following BLAST results are available for this feature:

BLAST of PI0004960 vs.


Match Name	E-value	Identity	Description

BLAST of PI0004960 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3D6G0	1.4e-09	31.44	Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold522G...	[more]
A0A5A7UJA4	1.4e-09	31.44	Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold190G...	[more]
A0A5D3BQY7	2.4e-09	47.37	Putative envelope-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_s...	[more]
A0A5A7TJI2	3.1e-09	36.99	Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold95G0...	[more]
A0A5A7UDB5	7.6e-08	32.45	Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold1192...	[more]

BLAST of PI0004960 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0053561.1	2.9e-09	31.44	gag-pol polyprotein [Cucumis melo var. makuwa]	[more]
TYK19154.1	2.9e-09	31.44	gag-pol polyprotein [Cucumis melo var. makuwa]	[more]
TYK01584.1	4.9e-09	47.37	putative envelope-like protein [Cucumis melo var. makuwa]	[more]
KAA0041781.1	6.4e-09	36.99	gag-pol polyprotein [Cucumis melo var. makuwa] >TYK27069.1 gag-pol polyprotein [...	[more]
KAA0053200.1	1.6e-07	32.45	gag-pol polyprotein [Cucumis melo var. makuwa]	[more]

BLAST of PI0004960 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 54..112
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..20
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 132..180

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
PI0004960.1	PI0004960.1	mRNA