PI0004403 (gene) Melon (PI 482460) v1

Overview
NamePI0004403
Typegene
OrganismCucumis metuliferus (Melon (PI 482460) v1)
DescriptionMediator of RNA polymerase II transcription subunit 12-like isoform X1
Locationchr06: 26116034 .. 26116971 (+)
RNA-Seq ExpressionPI0004403
SyntenyPI0004403
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTTGATCTTCTTCAACCTGATCAGGTACGTTGTGCTGAATTTGAATTTTAAGTTACATATTATCTGTTTAATATTAGTTGTTTCATATAATATATTGTGTTTCAGATTATCTGGGAGCCGTACAAAGCTGTCATGGATAGTTTGCCGAATTTCTGTATGAAGGGTCACGACATATGGCAGACAAGATGTTTTCACATCAGTGAGTGACATCATCCTGACAGAACACTCAGACAATTTGGTATTAAACAAGATGTTCCAGTTGACTGTAATACTAAACCACTCTTGCACAACATTGATCTGAGAACGGTTGATTGGTCCGATAGAATTGCTCATTTGGTGATGCGATGGCTAAATCGCAGAAGATTTATTGCTACGGGATCTTCGTTTGGGCAATTTGATGTTGATGTAACTCCAGAATACATTAATTGGTACAGAAATATTATCAGGCTCTATATCACTCGACCGAGAGCTGTTGTAGGTCATCTGGTACGTATTTAAATATTGTCTAATTGTTTTTAGTACAAATTTATTTTAAATAGTTTCTAATTAATTTTAGTATTTCACAGAGGTCAAACAATATTAGACTTCGGGATGTTGCAGATGATCCACAGCAGGTCCTAGATATATGCAACAATAACGAGCGATACATGGAGAACATACACTATATGTACGATGTACCTATTGTACCTGCACCAGTTCAAAGGAGACGTGCTCGAGTGCAAGAGCCTGATGAATTGGAAGAAGTTGAACAACACGTGCAAGAAGTGTCTCCTGTGAGACAAACACAAAGCGGGACTGGTAACGTTAGTCCAATGATGATGATGTCGGCATTTGGAATGAGATATTATGATTTAGAACTCGGTCAATCGTCAGACTTCGGGACAGGATATTATAATTCAAAGGCAGGTCCATCATCGTCAAACTTTGGACAATGA

mRNA sequence

ATGTTTGATCTTCTTCAACCTGATCAGATTATCTGGGAGCCGTACAAAGCTGTCATGGATAGTTTGCCGAATTTCTATGTTCCAGTTGACTGTAATACTAAACCACTCTTGCACAACATTGATCTGAGAACGGTTGATTGGTCCGATAGAATTGCTCATTTGGTGATGCGATGGCTAAATCGCAGAAGATTTATTGCTACGGGATCTTCGTTTGGGCAATTTGATGTTGATGTAACTCCAGAATACATTAATTGGTACAGAAATATTATCAGGCTCTATATCACTCGACCGAGAGCTGTTGTAGGTCATCTGAGGTCAAACAATATTAGACTTCGGGATGTTGCAGATGATCCACAGCAGGTCCTAGATATATGCAACAATAACGAGCGATACATGGAGAACATACACTATATGTACGATGTACCTATTGTACCTGCACCAGTTCAAAGGAGACGTGCTCGAGTGCAAGAGCCTGATGAATTGGAAGAAGTTGAACAACACGTGCAAGAAGTGTCTCCTGTGAGACAAACACAAAGCGGGACTGGTAACGTTAGTCCAATGATGATGATGTCGGCATTTGGAATGAGATATTATGATTTAGAACTCGGTCAATCGTCAGACTTCGGGACAGGATATTATAATTCAAAGGCAGGTCCATCATCGTCAAACTTTGGACAATGA

Coding sequence (CDS)

ATGTTTGATCTTCTTCAACCTGATCAGATTATCTGGGAGCCGTACAAAGCTGTCATGGATAGTTTGCCGAATTTCTATGTTCCAGTTGACTGTAATACTAAACCACTCTTGCACAACATTGATCTGAGAACGGTTGATTGGTCCGATAGAATTGCTCATTTGGTGATGCGATGGCTAAATCGCAGAAGATTTATTGCTACGGGATCTTCGTTTGGGCAATTTGATGTTGATGTAACTCCAGAATACATTAATTGGTACAGAAATATTATCAGGCTCTATATCACTCGACCGAGAGCTGTTGTAGGTCATCTGAGGTCAAACAATATTAGACTTCGGGATGTTGCAGATGATCCACAGCAGGTCCTAGATATATGCAACAATAACGAGCGATACATGGAGAACATACACTATATGTACGATGTACCTATTGTACCTGCACCAGTTCAAAGGAGACGTGCTCGAGTGCAAGAGCCTGATGAATTGGAAGAAGTTGAACAACACGTGCAAGAAGTGTCTCCTGTGAGACAAACACAAAGCGGGACTGGTAACGTTAGTCCAATGATGATGATGTCGGCATTTGGAATGAGATATTATGATTTAGAACTCGGTCAATCGTCAGACTTCGGGACAGGATATTATAATTCAAAGGCAGGTCCATCATCGTCAAACTTTGGACAATGA

Protein sequence

MFDLLQPDQIIWEPYKAVMDSLPNFYVPVDCNTKPLLHNIDLRTVDWSDRIAHLVMRWLNRRRFIATGSSFGQFDVDVTPEYINWYRNIIRLYITRPRAVVGHLRSNNIRLRDVADDPQQVLDICNNNERYMENIHYMYDVPIVPAPVQRRRARVQEPDELEEVEQHVQEVSPVRQTQSGTGNVSPMMMMSAFGMRYYDLELGQSSDFGTGYYNSKAGPSSSNFGQ
Homology
BLAST of PI0004403 vs. ExPASy TrEMBL
Match: A0A5A7VIP6 (Mediator of RNA polymerase II transcription subunit 12-like isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold38G001330 PE=4 SV=1)

HSP 1 Score: 343.6 bits (880), Expect = 6.3e-91
Identity = 172/262 (65.65%), Postives = 195/262 (74.43%), Query Frame = 0

Query: 1   MFDLLQPDQIIWEPYKAVMDSLPNF----------------------------------- 60
           MFDLLQP QI+WEPYK V+DSLP+F                                   
Sbjct: 275 MFDLLQPSQIVWEPYKTVIDSLPHFCTNGHNIWRTISPLICFYIGEWHHPDRVLRQFGIQ 334

Query: 61  -YVPVDCNTKPLLHNIDLRTVDWSDRIAHLVMRWLNRRRFIATGSSFGQFDVDVTPEYIN 120
             VP DCNT+PLLHNIDLRT DWSDR+AHLVMRW NRRRF ATG    QFD+DVT EYIN
Sbjct: 335 QAVPRDCNTEPLLHNIDLRTADWSDRVAHLVMRWHNRRRFTATGPPIEQFDMDVTQEYIN 394

Query: 121 WYRNIIRLYITRPRAVVGHLRSNNIRLRDVADDPQQVLDICNNNERYMENIHYMYDVPIV 180
           WY+NI +LYIT+P AV+ HLRSNNIRLR+VADDPQQVL+ICN+NE+YMENIHYMYDVPIV
Sbjct: 395 WYKNISKLYITQPGAVMSHLRSNNIRLRNVADDPQQVLNICNDNEQYMENIHYMYDVPIV 454

Query: 181 PAPVQRRRARVQEPDELEEVEQHVQEVSPVRQTQSGTGNVSPMMMMSAFGMRYYDLELGQ 227
           PAPVQRRR  VQEPD+LEEV+QH +EV P+ QTQS    VSP+MMM  FG  YYD E+GQ
Sbjct: 455 PAPVQRRRPLVQEPDQLEEVDQHGEEVPPMTQTQSEHNYVSPVMMMPTFGTTYYDSEVGQ 514

BLAST of PI0004403 vs. ExPASy TrEMBL
Match: A0A5D3BAB0 (Serine/threonine-protein phosphatase 7 long form-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold110G001240 PE=4 SV=1)

HSP 1 Score: 338.6 bits (867), Expect = 2.0e-89
Identity = 170/262 (64.89%), Postives = 193/262 (73.66%), Query Frame = 0

Query: 1    MFDLLQPDQIIWEPYKAVMDSLPNF----------------------------------- 60
            MFDLLQP QI+WEPYK V+DSLP+F                                   
Sbjct: 923  MFDLLQPSQIVWEPYKTVIDSLPHFCTNGHNIWRTISPLICFYIGEWHHPDRVLRQFGIQ 982

Query: 61   -YVPVDCNTKPLLHNIDLRTVDWSDRIAHLVMRWLNRRRFIATGSSFGQFDVDVTPEYIN 120
              VP DCNT+PLLHNIDLRT DWSDR+AHLVMRW NRRRF ATG    QFD+DVT EYI+
Sbjct: 983  QAVPRDCNTEPLLHNIDLRTADWSDRVAHLVMRWHNRRRFTATGPPIEQFDMDVTQEYIH 1042

Query: 121  WYRNIIRLYITRPRAVVGHLRSNNIRLRDVADDPQQVLDICNNNERYMENIHYMYDVPIV 180
            WY+NI +LYIT+P A + HLRSNNIRLR+VADDPQQVL+ICN+NE+YMENIHYMYDVPIV
Sbjct: 1043 WYKNISKLYITQPGAAMSHLRSNNIRLRNVADDPQQVLNICNDNEQYMENIHYMYDVPIV 1102

Query: 181  PAPVQRRRARVQEPDELEEVEQHVQEVSPVRQTQSGTGNVSPMMMMSAFGMRYYDLELGQ 227
            PAPVQRRR  VQEPD+LEEV+QH +EV P+ QTQS    VSP+MMM  FG  YYD  +GQ
Sbjct: 1103 PAPVQRRRPLVQEPDQLEEVDQHGKEVPPMTQTQSEHNYVSPVMMMPTFGTTYYDSGVGQ 1162

BLAST of PI0004403 vs. ExPASy TrEMBL
Match: A0A5A7T598 (Serine/threonine-protein phosphatase 7 long form-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold20G00500 PE=4 SV=1)

HSP 1 Score: 338.6 bits (867), Expect = 2.0e-89
Identity = 170/262 (64.89%), Postives = 193/262 (73.66%), Query Frame = 0

Query: 1   MFDLLQPDQIIWEPYKAVMDSLPNF----------------------------------- 60
           MFDLLQP QI+WEPYK V+DSLP+F                                   
Sbjct: 162 MFDLLQPSQIVWEPYKTVIDSLPHFCTNGHNIWRTISPLICFYIGEWHHPDRVLRQFGIQ 221

Query: 61  -YVPVDCNTKPLLHNIDLRTVDWSDRIAHLVMRWLNRRRFIATGSSFGQFDVDVTPEYIN 120
             VP DCNT+PLLHNIDLRT DWSDR+AHLVMRW NRRRF ATG    QFD+DVT EYI+
Sbjct: 222 QAVPRDCNTEPLLHNIDLRTADWSDRVAHLVMRWHNRRRFTATGPPIEQFDMDVTQEYIH 281

Query: 121 WYRNIIRLYITRPRAVVGHLRSNNIRLRDVADDPQQVLDICNNNERYMENIHYMYDVPIV 180
           WY+NI +LYIT+P A + HLRSNNIRLR+VADDPQQVL+ICN+NE+YMENIHYMYDVPIV
Sbjct: 282 WYKNISKLYITQPGAAMSHLRSNNIRLRNVADDPQQVLNICNDNEQYMENIHYMYDVPIV 341

Query: 181 PAPVQRRRARVQEPDELEEVEQHVQEVSPVRQTQSGTGNVSPMMMMSAFGMRYYDLELGQ 227
           PAPVQRRR  VQEPD+LEEV+QH +EV P+ QTQS    VSP+MMM  FG  YYD  +GQ
Sbjct: 342 PAPVQRRRPLVQEPDQLEEVDQHGKEVPPMTQTQSEHNYVSPVMMMPTFGTTYYDSGVGQ 401

BLAST of PI0004403 vs. ExPASy TrEMBL
Match: A0A5D3DUI1 (Mediator of RNA polymerase II transcription subunit 12-like isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold325G001210 PE=4 SV=1)

HSP 1 Score: 307.0 bits (785), Expect = 6.6e-80
Identity = 156/238 (65.55%), Postives = 182/238 (76.47%), Query Frame = 0

Query: 1   MFDLLQPDQII----------WEPYKAVMDSLPNFYVPVDCNTKPLLHNIDLRTVDWSDR 60
           MFDLLQP Q I          W     V+       VP DCNT+PLLHNIDLRT DW DR
Sbjct: 680 MFDLLQPSQTISPLICFYIGEWHHPDRVLRQFGK-AVPRDCNTEPLLHNIDLRTADWLDR 739

Query: 61  IAHLVMRWLNRRRFIATGSSFGQFDVDVTPEYINWYRNIIRLYITRPRAVVGHLRSNNIR 120
           +AHLVMRW NRRRF ATG    QFD+DVT EYI+WY+NI +LYIT+P A + HLRSNN R
Sbjct: 740 VAHLVMRWHNRRRFTATGPPIEQFDMDVTQEYIHWYKNISKLYITQPGAAMSHLRSNNTR 799

Query: 121 LRDVADDPQQVLDICNNNERYMENIHYMYDVPIVPAPVQRRRARVQEPDELEEVEQHVQE 180
           LR++ADDPQQVL+ICN+NE+YMENIHYMYDVPIVPAPVQRRR  VQE D+LEEV+QH +E
Sbjct: 800 LRNIADDPQQVLNICNDNEQYMENIHYMYDVPIVPAPVQRRRPLVQESDQLEEVDQHGEE 859

Query: 181 VSPVRQTQSGTGN--VSPMMMMSAFGMRYYDLELGQSSDFGTGYYNSKAGPSSSNFGQ 227
           V P+ QTQ+ + +  VSP+MMM  FGM YYD  +GQSSDFG GYYNS+AG SS++FGQ
Sbjct: 860 VPPMTQTQTQSEHNYVSPVMMMPTFGMTYYDSGVGQSSDFGRGYYNSEAGQSSTDFGQ 916

BLAST of PI0004403 vs. ExPASy TrEMBL
Match: A0A5A7U558 (Mediator of RNA polymerase II transcription subunit 12-like isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold487G00220 PE=4 SV=1)

HSP 1 Score: 300.4 bits (768), Expect = 6.1e-78
Identity = 153/235 (65.11%), Postives = 181/235 (77.02%), Query Frame = 0

Query: 1   MFDLLQPDQIIWEPYKAVMDSLPNFYVPVDCNTKPLLHNIDLRTVDWS---------DRI 60
           MFDLLQP QIIW+ YK V+DSLP+F        + +   I     +W          D++
Sbjct: 1   MFDLLQPSQIIWKSYKTVIDSLPHFCTNGHDIRRTINSVICFYISEWHHPNRVLRQFDKV 60

Query: 61  AHLVMRWLNRRRFIATGSSFGQFDVDVTPEYINWYRNIIRLYITRPRAVVGHLRSNNIRL 120
           AHLVMRWLNRRRF ATG    QFD+DVT EYI+WY+NI RLYIT+P AVVGHLRSNN RL
Sbjct: 61  AHLVMRWLNRRRFTATGPLVEQFDMDVTQEYIHWYKNITRLYITQPGAVVGHLRSNNSRL 120

Query: 121 RDVADDPQQVLDICNNNERYMENIHYMYDVPIVPAPVQRRRARVQEPDELEEVEQHVQEV 180
           R+VA++PQQ+L+ICN+NE+YMENIHYMYDVPI  APVQRR A VQ+PD+LEEV+QHV+E+
Sbjct: 121 RNVANNPQQILNICNDNEQYMENIHYMYDVPITLAPVQRRCALVQKPDQLEEVDQHVEEM 180

Query: 181 SPVRQTQSGTGNVSPMMMMSAFGMRYYDLELGQSSDFGTGYYNSKAGPSSSNFGQ 227
             + QTQS    VSP+MMMSAFG  YYDL +GQSSDFGTGYYNS+A PSSSNFGQ
Sbjct: 181 PLMTQTQSEHSYVSPVMMMSAFGTTYYDLGVGQSSDFGTGYYNSEASPSSSNFGQ 235

BLAST of PI0004403 vs. NCBI nr
Match: KAA0067080.1 (mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 343.6 bits (880), Expect = 1.3e-90
Identity = 172/262 (65.65%), Postives = 195/262 (74.43%), Query Frame = 0

Query: 1   MFDLLQPDQIIWEPYKAVMDSLPNF----------------------------------- 60
           MFDLLQP QI+WEPYK V+DSLP+F                                   
Sbjct: 275 MFDLLQPSQIVWEPYKTVIDSLPHFCTNGHNIWRTISPLICFYIGEWHHPDRVLRQFGIQ 334

Query: 61  -YVPVDCNTKPLLHNIDLRTVDWSDRIAHLVMRWLNRRRFIATGSSFGQFDVDVTPEYIN 120
             VP DCNT+PLLHNIDLRT DWSDR+AHLVMRW NRRRF ATG    QFD+DVT EYIN
Sbjct: 335 QAVPRDCNTEPLLHNIDLRTADWSDRVAHLVMRWHNRRRFTATGPPIEQFDMDVTQEYIN 394

Query: 121 WYRNIIRLYITRPRAVVGHLRSNNIRLRDVADDPQQVLDICNNNERYMENIHYMYDVPIV 180
           WY+NI +LYIT+P AV+ HLRSNNIRLR+VADDPQQVL+ICN+NE+YMENIHYMYDVPIV
Sbjct: 395 WYKNISKLYITQPGAVMSHLRSNNIRLRNVADDPQQVLNICNDNEQYMENIHYMYDVPIV 454

Query: 181 PAPVQRRRARVQEPDELEEVEQHVQEVSPVRQTQSGTGNVSPMMMMSAFGMRYYDLELGQ 227
           PAPVQRRR  VQEPD+LEEV+QH +EV P+ QTQS    VSP+MMM  FG  YYD E+GQ
Sbjct: 455 PAPVQRRRPLVQEPDQLEEVDQHGEEVPPMTQTQSEHNYVSPVMMMPTFGTTYYDSEVGQ 514

BLAST of PI0004403 vs. NCBI nr
Match: KAA0036767.1 (serine/threonine-protein phosphatase 7 long form-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 338.6 bits (867), Expect = 4.2e-89
Identity = 170/262 (64.89%), Postives = 193/262 (73.66%), Query Frame = 0

Query: 1   MFDLLQPDQIIWEPYKAVMDSLPNF----------------------------------- 60
           MFDLLQP QI+WEPYK V+DSLP+F                                   
Sbjct: 162 MFDLLQPSQIVWEPYKTVIDSLPHFCTNGHNIWRTISPLICFYIGEWHHPDRVLRQFGIQ 221

Query: 61  -YVPVDCNTKPLLHNIDLRTVDWSDRIAHLVMRWLNRRRFIATGSSFGQFDVDVTPEYIN 120
             VP DCNT+PLLHNIDLRT DWSDR+AHLVMRW NRRRF ATG    QFD+DVT EYI+
Sbjct: 222 QAVPRDCNTEPLLHNIDLRTADWSDRVAHLVMRWHNRRRFTATGPPIEQFDMDVTQEYIH 281

Query: 121 WYRNIIRLYITRPRAVVGHLRSNNIRLRDVADDPQQVLDICNNNERYMENIHYMYDVPIV 180
           WY+NI +LYIT+P A + HLRSNNIRLR+VADDPQQVL+ICN+NE+YMENIHYMYDVPIV
Sbjct: 282 WYKNISKLYITQPGAAMSHLRSNNIRLRNVADDPQQVLNICNDNEQYMENIHYMYDVPIV 341

Query: 181 PAPVQRRRARVQEPDELEEVEQHVQEVSPVRQTQSGTGNVSPMMMMSAFGMRYYDLELGQ 227
           PAPVQRRR  VQEPD+LEEV+QH +EV P+ QTQS    VSP+MMM  FG  YYD  +GQ
Sbjct: 342 PAPVQRRRPLVQEPDQLEEVDQHGKEVPPMTQTQSEHNYVSPVMMMPTFGTTYYDSGVGQ 401

BLAST of PI0004403 vs. NCBI nr
Match: TYJ95836.1 (serine/threonine-protein phosphatase 7 long form-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 338.6 bits (867), Expect = 4.2e-89
Identity = 170/262 (64.89%), Postives = 193/262 (73.66%), Query Frame = 0

Query: 1    MFDLLQPDQIIWEPYKAVMDSLPNF----------------------------------- 60
            MFDLLQP QI+WEPYK V+DSLP+F                                   
Sbjct: 923  MFDLLQPSQIVWEPYKTVIDSLPHFCTNGHNIWRTISPLICFYIGEWHHPDRVLRQFGIQ 982

Query: 61   -YVPVDCNTKPLLHNIDLRTVDWSDRIAHLVMRWLNRRRFIATGSSFGQFDVDVTPEYIN 120
              VP DCNT+PLLHNIDLRT DWSDR+AHLVMRW NRRRF ATG    QFD+DVT EYI+
Sbjct: 983  QAVPRDCNTEPLLHNIDLRTADWSDRVAHLVMRWHNRRRFTATGPPIEQFDMDVTQEYIH 1042

Query: 121  WYRNIIRLYITRPRAVVGHLRSNNIRLRDVADDPQQVLDICNNNERYMENIHYMYDVPIV 180
            WY+NI +LYIT+P A + HLRSNNIRLR+VADDPQQVL+ICN+NE+YMENIHYMYDVPIV
Sbjct: 1043 WYKNISKLYITQPGAAMSHLRSNNIRLRNVADDPQQVLNICNDNEQYMENIHYMYDVPIV 1102

Query: 181  PAPVQRRRARVQEPDELEEVEQHVQEVSPVRQTQSGTGNVSPMMMMSAFGMRYYDLELGQ 227
            PAPVQRRR  VQEPD+LEEV+QH +EV P+ QTQS    VSP+MMM  FG  YYD  +GQ
Sbjct: 1103 PAPVQRRRPLVQEPDQLEEVDQHGKEVPPMTQTQSEHNYVSPVMMMPTFGTTYYDSGVGQ 1162

BLAST of PI0004403 vs. NCBI nr
Match: TYK27427.1 (mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 307.0 bits (785), Expect = 1.4e-79
Identity = 156/238 (65.55%), Postives = 182/238 (76.47%), Query Frame = 0

Query: 1   MFDLLQPDQII----------WEPYKAVMDSLPNFYVPVDCNTKPLLHNIDLRTVDWSDR 60
           MFDLLQP Q I          W     V+       VP DCNT+PLLHNIDLRT DW DR
Sbjct: 680 MFDLLQPSQTISPLICFYIGEWHHPDRVLRQFGK-AVPRDCNTEPLLHNIDLRTADWLDR 739

Query: 61  IAHLVMRWLNRRRFIATGSSFGQFDVDVTPEYINWYRNIIRLYITRPRAVVGHLRSNNIR 120
           +AHLVMRW NRRRF ATG    QFD+DVT EYI+WY+NI +LYIT+P A + HLRSNN R
Sbjct: 740 VAHLVMRWHNRRRFTATGPPIEQFDMDVTQEYIHWYKNISKLYITQPGAAMSHLRSNNTR 799

Query: 121 LRDVADDPQQVLDICNNNERYMENIHYMYDVPIVPAPVQRRRARVQEPDELEEVEQHVQE 180
           LR++ADDPQQVL+ICN+NE+YMENIHYMYDVPIVPAPVQRRR  VQE D+LEEV+QH +E
Sbjct: 800 LRNIADDPQQVLNICNDNEQYMENIHYMYDVPIVPAPVQRRRPLVQESDQLEEVDQHGEE 859

Query: 181 VSPVRQTQSGTGN--VSPMMMMSAFGMRYYDLELGQSSDFGTGYYNSKAGPSSSNFGQ 227
           V P+ QTQ+ + +  VSP+MMM  FGM YYD  +GQSSDFG GYYNS+AG SS++FGQ
Sbjct: 860 VPPMTQTQTQSEHNYVSPVMMMPTFGMTYYDSGVGQSSDFGRGYYNSEAGQSSTDFGQ 916

BLAST of PI0004403 vs. NCBI nr
Match: TYK14590.1 (mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 300.4 bits (768), Expect = 1.3e-77
Identity = 152/228 (66.67%), Postives = 179/228 (78.51%), Query Frame = 0

Query: 1   MFDLLQPDQIIWEPYKAVMDSLPNFYVPVDCNTKPLLHNIDLRTVDWSDRIAHLVMRWLN 60
           MFDLLQP Q        +  +     VP DCNT+PLLHNIDLRT DWSDR+AHLVMRW N
Sbjct: 509 MFDLLQPSQF------GIQQA-----VPRDCNTEPLLHNIDLRTADWSDRVAHLVMRWHN 568

Query: 61  RRRFIATGSSFGQFDVDVTPEYINWYRNIIRLYITRPRAVVGHLRSNNIRLRDVADDPQQ 120
           RRRF ATG    QFD+DVT EYI+WY+NI +LYIT+P A + HLRSNNIRLR+VADD QQ
Sbjct: 569 RRRFTATGPPIEQFDMDVTQEYIHWYKNISKLYITQPGAAMSHLRSNNIRLRNVADDLQQ 628

Query: 121 VLDICNNNERYMENIHYMYDVPIVPAPVQRRRARVQEPDELEEVEQHVQEVSPVRQTQSG 180
           VL+ICN+NE+YMENIHYMYDVPIV APVQ+RR  VQEPD+LEEV+QH +EV P+ QTQ+ 
Sbjct: 629 VLNICNDNEQYMENIHYMYDVPIVLAPVQKRRPLVQEPDQLEEVDQHGEEVPPMTQTQTQ 688

Query: 181 TGN--VSPMMMMSAFGMRYYDLELGQSSDFGTGYYNSKAGPSSSNFGQ 227
           + +  V P+MMM  FG  YYD ++GQSSDF  GYYNS+AG SS+NFGQ
Sbjct: 689 SEHSYVCPVMMMPTFGTTYYDSKVGQSSDFERGYYNSEAGQSSTNFGQ 725

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5A7VIP66.3e-9165.65Mediator of RNA polymerase II transcription subunit 12-like isoform X1 OS=Cucumi... [more]
A0A5D3BAB02.0e-8964.89Serine/threonine-protein phosphatase 7 long form-like protein OS=Cucumis melo va... [more]
A0A5A7T5982.0e-8964.89Serine/threonine-protein phosphatase 7 long form-like protein OS=Cucumis melo va... [more]
A0A5D3DUI16.6e-8065.55Mediator of RNA polymerase II transcription subunit 12-like isoform X1 OS=Cucumi... [more]
A0A5A7U5586.1e-7865.11Mediator of RNA polymerase II transcription subunit 12-like isoform X1 OS=Cucumi... [more]
Match NameE-valueIdentityDescription
KAA0067080.11.3e-9065.65mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis ... [more]
KAA0036767.14.2e-8964.89serine/threonine-protein phosphatase 7 long form-like protein [Cucumis melo var.... [more]
TYJ95836.14.2e-8964.89serine/threonine-protein phosphatase 7 long form-like protein [Cucumis melo var.... [more]
TYK27427.11.4e-7965.55mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis ... [more]
TYK14590.11.3e-7766.67mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis ... [more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
PI0004403.1PI0004403.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0048507 meristem development