PI0003794 (gene) Melon (PI 482460) v1

Overview


Name	PI0003794
Type	gene
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	Alba domain-containing protein
Location	chr05: 2188832 .. 2190780 (-)
RNA-Seq Expression	PI0003794
Synteny	PI0003794

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AACAAAACTTCCAAATTAGGAAAAACATTTTTAAATAATACAAGAATGACAAAAAAGTCCAAGTAAAAATTACTTGATAAAGAAAAAGTTGAGGGTAATTTGGGGAATCTAAAATAGGGGGGGAGAAAGTTCTATTCTAACGGCCTTTACAAATACTATGACTTTTGACCATCTCTTATTCCCGTGATAACGGTCAACAAAACTAACTTCCATGTTCTCCACCCAATCAAACCCCACCACGTGTCACTTTCCCGCTCTTTCCCTCTATAAAATCCTTCTTCTTAACGACTTCCACCTAGTTTCCGGAAGCCCTTCAATCGCCTCCCCTTCCATTTTCCCGCTCCTTCCAATTTTCCCGAGAGAATTTCTCAAGAAAGTAAATTCTTCTCTCTGTTTCTTTCATCTGCTTACGAGAAAACATAGAATTTTACTCAGTGAGAAAGTGAAAATAGCAATGGCGACGATTGCAGTATCGGGAGCCACAGCCGCCACTGAAACACAAAAGAAGAACAGAATTCAGGTTTCTAATACCAAGAAACCCCTCTTCTTCTACGTTAATCTTGCTAAGGTATATATGCATAAATCCCTTTTTTCACTTCTTCAATTCTTTGATTATTCGTTTGTAATGACTCACAAAGATTATTACACCCATTTCGTTTTCCTTGTGTTCTTCTTGTTAGAAATGGAATCCCCATATTCGCAATGCATGAACGATTCATCAATAATCCGTGTTGTTCTTTAGATTTGCTTTATGATTTGAGTATCCGTATATGGACAATCGTTTAATTTCAGTTTCTACGTGTTTTGGTTTGTTTTCTTTTTATTGGTAATTCTAATCGTTGTTTGCCCTAAATTCAGAGGTACATTCAACAACATAATGAAGTTGAGCTTTCTGCCTTGGGAATGGGTATTGTTTCGTTTCTTGTACTTCTTTTAACTTATAGATATATATCTGATGAATTTTTTGTTTTCTTGGCTCCAATCCTTATTTGTATTATTACAGCAATCACTACTGTTGTCACAATTGCGGAGATTCTTAAGAATAATGGGCTGGCTACGGAAAAGAGTATAATCCATAATCTTTGATGTTAGTCACTCTTGATAAAAATGGTGCTAATTGTATTTTACTGATAATCTTTATGGTTTTGTAATGAAACAGGAGTTTTGACTTCTACAGTCGGCATGAAAGATGAGAATAAAGGACGTTTGGTTCAGAAAGCTAAGGTAATTTGTTCAATTAGTTATGAGTGTTGAGATAATGTTCTTCTAGGATTGATTGATTTTGGACGATTATCTGCTTCTGGGTTCTTAGAAAATGATTTATACTTTTCAAAAATGGTTTTAACCCTTTCAAAATCACTCTCCAACGTTTGCTTTTTTGTGTCTTGAATAGCCAGATTAAGATTTTGAGAGTGTTGTTTTTGGTTTATTTTGTGATAGATTGAGATTGTTCTGGGGAAGTCTGAGAAGTTTGATTCTCTGATGACTGCGGCCACGGCAGTACCGGAGACAGTGGTGGCAGTTGAGGCAGCTGCCGAGGAGGAGAAGAAAGCAGAGGAAAGCAAGGAGGAGCAGTAGGGGAAAAGAAAGAAAGGAATGTGATGTTACATTGTTGTAGTTTAAGAATCACATTTGCAATATTATAGGATAGGCTATTTTCATTTGGAATTCCTCTACTAGTTTTTTTTTTTGCCTCTTTCTGAACAGTCACAGTTATGAATGAGATGCATGCCATCAACCAAAAAGAACAAAAAAAAAAAAAAAAAAAAAAAAAGGAAGAGGAAGAAGAAGAAGGAAAAAAACCCTTTTTTTTTTCTCTCTATCAACTGTGTTAAGAAGAAGCCTTTTTGTGTTGCATTTTTGGTACTTTCATGTTGATCTAATCAAGTTGAATCCCTTGAAAATGATGGTTCTTTTGGAATCTTTTTCCCTTTTGTCTTTATCTTTTG

mRNA sequence

AACAAAACTTCCAAATTAGGAAAAACATTTTTAAATAATACAAGAATGACAAAAAAGTCCAAGTAAAAATTACTTGATAAAGAAAAAGTTGAGGGTAATTTGGGGAATCTAAAATAGGGGGGGAGAAAGTTCTATTCTAACGGCCTTTACAAATACTATGACTTTTGACCATCTCTTATTCCCGTGATAACGGTCAACAAAACTAACTTCCATGTTCTCCACCCAATCAAACCCCACCACGTGTCACTTTCCCGCTCTTTCCCTCTATAAAATCCTTCTTCTTAACGACTTCCACCTAGTTTCCGGAAGCCCTTCAATCGCCTCCCCTTCCATTTTCCCGCTCCTTCCAATTTTCCCGAGAGAATTTCTCAAGAAAGTAAATTCTTCTCTCTGTTTCTTTCATCTGCTTACGAGAAAACATAGAATTTTACTCAGTGAGAAAGTGAAAATAGCAATGGCGACGATTGCAGTATCGGGAGCCACAGCCGCCACTGAAACACAAAAGAAGAACAGAATTCAGGTTTCTAATACCAAGAAACCCCTCTTCTTCTACGTTAATCTTGCTAAGAGGTACATTCAACAACATAATGAAGTTGAGCTTTCTGCCTTGGGAATGGCAATCACTACTGTTGTCACAATTGCGGAGATTCTTAAGAATAATGGGCTGGCTACGGAAAAGAGAGTTTTGACTTCTACAGTCGGCATGAAAGATGAGAATAAAGGACGTTTGGTTCAGAAAGCTAAGATTGAGATTGTTCTGGGGAAGTCTGAGAAGTTTGATTCTCTGATGACTGCGGCCACGGCAGTACCGGAGACAGTGGTGGCAGTTGAGGCAGCTGCCGAGGAGGAGAAGAAAGCAGAGGAAAGCAAGGAGGAGCAGTAGGGGAAAAGAAAGAAAGGAATGTGATGTTACATTGTTGTAGTTTAAGAATCACATTTGCAATATTATAGGATAGGCTATTTTCATTTGGAATTCCTCTACTAGTTTTTTTTTTTGCCTCTTTCTGAACAGTCACAGTTATGAATGAGATGCATGCCATCAACCAAAAAGAACAAAAAAAAAAAAAAAAAAAAAAAAAGGAAGAGGAAGAAGAAGAAGGAAAAAAACCCTTTTTTTTTTCTCTCTATCAACTGTGTTAAGAAGAAGCCTTTTTGTGTTGCATTTTTGGTACTTTCATGTTGATCTAATCAAGTTGAATCCCTTGAAAATGATGGTTCTTTTGGAATCTTTTTCCCTTTTGTCTTTATCTTTTG

Coding sequence (CDS)

ATGTTCTCCACCCAATCAAACCCCACCACGTGTCACTTTCCCGCTCTTTCCCTCTATAAAATCCTTCTTCTTAACGACTTCCACCTAGTTTCCGGAAGCCCTTCAATCGCCTCCCCTTCCATTTTCCCGCTCCTTCCAATTTTCCCGAGAGAATTTCTCAAGAAAGTAAATTCTTCTCTCTGTTTCTTTCATCTGCTTACGAGAAAACATAGAATTTTACTCAGTGAGAAAGTGAAAATAGCAATGGCGACGATTGCAGTATCGGGAGCCACAGCCGCCACTGAAACACAAAAGAAGAACAGAATTCAGGTTTCTAATACCAAGAAACCCCTCTTCTTCTACGTTAATCTTGCTAAGAGGTACATTCAACAACATAATGAAGTTGAGCTTTCTGCCTTGGGAATGGCAATCACTACTGTTGTCACAATTGCGGAGATTCTTAAGAATAATGGGCTGGCTACGGAAAAGAGAGTTTTGACTTCTACAGTCGGCATGAAAGATGAGAATAAAGGACGTTTGGTTCAGAAAGCTAAGATTGAGATTGTTCTGGGGAAGTCTGAGAAGTTTGATTCTCTGATGACTGCGGCCACGGCAGTACCGGAGACAGTGGTGGCAGTTGAGGCAGCTGCCGAGGAGGAGAAGAAAGCAGAGGAAAGCAAGGAGGAGCAGTAG

Protein sequence

MFSTQSNPTTCHFPALSLYKILLLNDFHLVSGSPSIASPSIFPLLPIFPREFLKKVNSSLCFFHLLTRKHRILLSEKVKIAMATIAVSGATAATETQKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTVVTIAEILKNNGLATEKRVLTSTVGMKDENKGRLVQKAKIEIVLGKSEKFDSLMTAATAVPETVVAVEAAAEEEKKAEESKEEQ

Homology

[Close]

BLAST of PI0003794 vs. ExPASy Swiss-Prot
Match: O22969 (Uncharacterized protein At2g34160 OS=Arabidopsis thaliana OX=3702 GN=At2g34160 PE=1 SV=1)

HSP 1 Score: 157.1 bits (396), Expect = 2.2e-37
Identity = 85/122 (69.67%), Postives = 98/122 (80.33%), Query Frame = 0


Query: 84  TIAVSGATAATETQKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTVVTI 143
           T  V+    AT++QKKNRIQVSNTKKPLFFYVNLAKRY+QQ+N+VELSALGMAI TVVT+
Sbjct: 5   TDGVNNMNLATDSQKKNRIQVSNTKKPLFFYVNLAKRYMQQYNDVELSALGMAIATVVTV 64

Query: 144 AEILKNNGLATEKRVLTSTVGMKDENKGRLVQKAKIEIVLGKSEKFDSLMTAATAVPETV 203
            EILKNNG A EK+++TSTV +KD+ +GR VQKAKIEI L KSEKFD LM AA    E  
Sbjct: 65  TEILKNNGFAVEKKIMTSTVDIKDDARGRPVQKAKIEITLVKSEKFDELMAAANEEKEDA 124

Query: 204 VA 206
            A
Sbjct: 125 EA 126

[Close]

BLAST of PI0003794 vs. ExPASy TrEMBL
Match: A0A0A0LG69 (Alba domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G010240 PE=4 SV=1)

HSP 1 Score: 244.6 bits (623), Expect = 4.0e-61
Identity = 138/141 (97.87%), Postives = 139/141 (98.58%), Query Frame = 0


Query: 83  ATIAVSGATAATETQKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTVVT 142
           ATIAVSGAT ATETQKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTVVT
Sbjct: 3   ATIAVSGATPATETQKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTVVT 62

Query: 143 IAEILKNNGLATEKRVLTSTVGMKDENKGRLVQKAKIEIVLGKSEKFDSLMTAATAVPET 202
           IAEILKNNGLATEK+VLTSTVGMKDENKGRLVQKAKIEIVLGKSEKFDSLMTAATAVPET
Sbjct: 63  IAEILKNNGLATEKKVLTSTVGMKDENKGRLVQKAKIEIVLGKSEKFDSLMTAATAVPET 122

Query: 203 VVAVEAAAEEEKKAEESKEEQ 224
           VVAV AAAEEEKKAEESKEEQ
Sbjct: 123 VVAVAAAAEEEKKAEESKEEQ 143

[Close]

BLAST of PI0003794 vs. ExPASy TrEMBL
Match: A0A5D3D4G4 (Alba DNA/RNA-binding protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold456G001630 PE=4 SV=1)

HSP 1 Score: 243.8 bits (621), Expect = 6.7e-61
Identity = 137/142 (96.48%), Postives = 139/142 (97.89%), Query Frame = 0


Query: 82  MATIAVSGATAATETQKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTVV 141
           MATIAVSGAT ATETQKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTVV
Sbjct: 1   MATIAVSGATPATETQKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTVV 60

Query: 142 TIAEILKNNGLATEKRVLTSTVGMKDENKGRLVQKAKIEIVLGKSEKFDSLMTAATAVPE 201
           TIAEILKNNGLATEK+VLTSTVGMKDENKGRLVQKAKIEIVLGKSEKFDSLMTAATAVPE
Sbjct: 61  TIAEILKNNGLATEKKVLTSTVGMKDENKGRLVQKAKIEIVLGKSEKFDSLMTAATAVPE 120

Query: 202 TVVAVEAAAEEEKKAEESKEEQ 224
           TVVAV AA EEEKKAEE+KEEQ
Sbjct: 121 TVVAVAAAGEEEKKAEENKEEQ 142

[Close]

BLAST of PI0003794 vs. ExPASy TrEMBL
Match: A0A1S3C2U1 (uncharacterized protein At2g34160 OS=Cucumis melo OX=3656 GN=LOC103496224 PE=4 SV=1)

HSP 1 Score: 243.8 bits (621), Expect = 6.7e-61
Identity = 137/142 (96.48%), Postives = 139/142 (97.89%), Query Frame = 0


Query: 82  MATIAVSGATAATETQKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTVV 141
           MATIAVSGAT ATETQKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTVV
Sbjct: 1   MATIAVSGATPATETQKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTVV 60

Query: 142 TIAEILKNNGLATEKRVLTSTVGMKDENKGRLVQKAKIEIVLGKSEKFDSLMTAATAVPE 201
           TIAEILKNNGLATEK+VLTSTVGMKDENKGRLVQKAKIEIVLGKSEKFDSLMTAATAVPE
Sbjct: 61  TIAEILKNNGLATEKKVLTSTVGMKDENKGRLVQKAKIEIVLGKSEKFDSLMTAATAVPE 120

Query: 202 TVVAVEAAAEEEKKAEESKEEQ 224
           TVVAV AA EEEKKAEE+KEEQ
Sbjct: 121 TVVAVAAAGEEEKKAEENKEEQ 142

[Close]

BLAST of PI0003794 vs. ExPASy TrEMBL
Match: A0A6J1KEC8 (uncharacterized protein At2g34160 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111493582 PE=4 SV=1)

HSP 1 Score: 219.9 bits (559), Expect = 1.0e-53
Identity = 133/163 (81.60%), Postives = 135/163 (82.82%), Query Frame = 0


Query: 82  MATIAVSGAT---------AATETQKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSA 141
           MAT+AVSGAT         AATETQKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSA
Sbjct: 1   MATMAVSGATAAATPTPVAAATETQKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSA 60

Query: 142 LGMAITTVVTIAEILKNNGLATEKRVLTSTVGMKDENKGRLVQKAKIEIVLGKSEKFDSL 201
           LGMAITTVVTIAEILKNNGLATEK+VLTSTVGMKDENKGRLVQKAKIEIVLGKSEKFDSL
Sbjct: 61  LGMAITTVVTIAEILKNNGLATEKKVLTSTVGMKDENKGRLVQKAKIEIVLGKSEKFDSL 120

Query: 202 MTAATAVPETVVAVEA------------AAEEEKKAEESKEEQ 224
           MTAAT VPE  VA  A            AA EEKK EESKEEQ
Sbjct: 121 MTAATVVPEAAVATTAVVAATATVTAAPAAAEEKKEEESKEEQ 163

[Close]

BLAST of PI0003794 vs. ExPASy TrEMBL
Match: A0A6J1G2Y0 (uncharacterized protein At2g34160-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111450305 PE=4 SV=1)

HSP 1 Score: 219.9 bits (559), Expect = 1.0e-53
Identity = 132/158 (83.54%), Postives = 134/158 (84.81%), Query Frame = 0


Query: 82  MATIAVSGAT---------AATETQKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSA 141
           MAT+AVSGAT         AATETQKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSA
Sbjct: 1   MATMAVSGATAAATPTPAAAATETQKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSA 60

Query: 142 LGMAITTVVTIAEILKNNGLATEKRVLTSTVGMKDENKGRLVQKAKIEIVLGKSEKFDSL 201
           LGMAITTVVTIAEILKNNGLATEK+VLTSTVGMKDENKGRLVQKAKIEIVLGKSEKFDSL
Sbjct: 61  LGMAITTVVTIAEILKNNGLATEKKVLTSTVGMKDENKGRLVQKAKIEIVLGKSEKFDSL 120

Query: 202 MTAATAVPETVVAVEAA-------AEEEKKAEESKEEQ 224
           MTAAT VPE  VA   A       A EEKK EESKEEQ
Sbjct: 121 MTAATTVPEPAVATATATAMAAPVAAEEKKEEESKEEQ 158

[Close]

BLAST of PI0003794 vs. NCBI nr
Match: XP_004139384.1 (uncharacterized protein At2g34160 [Cucumis sativus])

HSP 1 Score: 244.6 bits (623), Expect = 8.2e-61
Identity = 138/141 (97.87%), Postives = 139/141 (98.58%), Query Frame = 0


Query: 83  ATIAVSGATAATETQKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTVVT 142
           ATIAVSGAT ATETQKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTVVT
Sbjct: 3   ATIAVSGATPATETQKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTVVT 62

Query: 143 IAEILKNNGLATEKRVLTSTVGMKDENKGRLVQKAKIEIVLGKSEKFDSLMTAATAVPET 202
           IAEILKNNGLATEK+VLTSTVGMKDENKGRLVQKAKIEIVLGKSEKFDSLMTAATAVPET
Sbjct: 63  IAEILKNNGLATEKKVLTSTVGMKDENKGRLVQKAKIEIVLGKSEKFDSLMTAATAVPET 122

Query: 203 VVAVEAAAEEEKKAEESKEEQ 224
           VVAV AAAEEEKKAEESKEEQ
Sbjct: 123 VVAVAAAAEEEKKAEESKEEQ 143

[Close]

BLAST of PI0003794 vs. NCBI nr
Match: XP_008456222.1 (PREDICTED: uncharacterized protein At2g34160 [Cucumis melo] >KAA0063590.1 alba DNA/RNA-binding protein [Cucumis melo var. makuwa] >TYK18437.1 alba DNA/RNA-binding protein [Cucumis melo var. makuwa])

HSP 1 Score: 243.8 bits (621), Expect = 1.4e-60
Identity = 137/142 (96.48%), Postives = 139/142 (97.89%), Query Frame = 0


Query: 82  MATIAVSGATAATETQKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTVV 141
           MATIAVSGAT ATETQKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTVV
Sbjct: 1   MATIAVSGATPATETQKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTVV 60

Query: 142 TIAEILKNNGLATEKRVLTSTVGMKDENKGRLVQKAKIEIVLGKSEKFDSLMTAATAVPE 201
           TIAEILKNNGLATEK+VLTSTVGMKDENKGRLVQKAKIEIVLGKSEKFDSLMTAATAVPE
Sbjct: 61  TIAEILKNNGLATEKKVLTSTVGMKDENKGRLVQKAKIEIVLGKSEKFDSLMTAATAVPE 120

Query: 202 TVVAVEAAAEEEKKAEESKEEQ 224
           TVVAV AA EEEKKAEE+KEEQ
Sbjct: 121 TVVAVAAAGEEEKKAEENKEEQ 142

[Close]

BLAST of PI0003794 vs. NCBI nr
Match: XP_038877259.1 (uncharacterized protein At2g34160-like [Benincasa hispida])

HSP 1 Score: 226.9 bits (577), Expect = 1.8e-55
Identity = 133/144 (92.36%), Postives = 136/144 (94.44%), Query Frame = 0


Query: 82  MATIAVSGATAATETQKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTVV 141
           MATIAVSGA AATETQKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTVV
Sbjct: 1   MATIAVSGA-AATETQKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTVV 60

Query: 142 TIAEILKNNGLATEKRVLTSTVGMKDENKGRLVQKAKIEIVLGKSEKFDSLMTAATAVP- 201
           TIAEILKNNGLATEK+VLTSTVGMKDENKGRLVQKAKIEIVLGKSEKFDSLMTAATAVP 
Sbjct: 61  TIAEILKNNGLATEKKVLTSTVGMKDENKGRLVQKAKIEIVLGKSEKFDSLMTAATAVPE 120

Query: 202 --ETVVAVEAAAEEEKKAEESKEE 223
             ETV    AAAEEEKKAEE+KE+
Sbjct: 121 VVETVATGAAAAEEEKKAEENKEQ 143

[Close]

BLAST of PI0003794 vs. NCBI nr
Match: XP_022946134.1 (uncharacterized protein At2g34160-like isoform X1 [Cucurbita moschata] >KAG7030319.1 hypothetical protein SDJN02_08666 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 219.9 bits (559), Expect = 2.2e-53
Identity = 132/158 (83.54%), Postives = 134/158 (84.81%), Query Frame = 0


Query: 82  MATIAVSGAT---------AATETQKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSA 141
           MAT+AVSGAT         AATETQKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSA
Sbjct: 1   MATMAVSGATAAATPTPAAAATETQKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSA 60

Query: 142 LGMAITTVVTIAEILKNNGLATEKRVLTSTVGMKDENKGRLVQKAKIEIVLGKSEKFDSL 201
           LGMAITTVVTIAEILKNNGLATEK+VLTSTVGMKDENKGRLVQKAKIEIVLGKSEKFDSL
Sbjct: 61  LGMAITTVVTIAEILKNNGLATEKKVLTSTVGMKDENKGRLVQKAKIEIVLGKSEKFDSL 120

Query: 202 MTAATAVPETVVAVEAA-------AEEEKKAEESKEEQ 224
           MTAAT VPE  VA   A       A EEKK EESKEEQ
Sbjct: 121 MTAATTVPEPAVATATATAMAAPVAAEEKKEEESKEEQ 158

[Close]

BLAST of PI0003794 vs. NCBI nr
Match: XP_022999100.1 (uncharacterized protein At2g34160 isoform X1 [Cucurbita maxima])

HSP 1 Score: 219.9 bits (559), Expect = 2.2e-53
Identity = 133/163 (81.60%), Postives = 135/163 (82.82%), Query Frame = 0


Query: 82  MATIAVSGAT---------AATETQKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSA 141
           MAT+AVSGAT         AATETQKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSA
Sbjct: 1   MATMAVSGATAAATPTPVAAATETQKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSA 60

Query: 142 LGMAITTVVTIAEILKNNGLATEKRVLTSTVGMKDENKGRLVQKAKIEIVLGKSEKFDSL 201
           LGMAITTVVTIAEILKNNGLATEK+VLTSTVGMKDENKGRLVQKAKIEIVLGKSEKFDSL
Sbjct: 61  LGMAITTVVTIAEILKNNGLATEKKVLTSTVGMKDENKGRLVQKAKIEIVLGKSEKFDSL 120

Query: 202 MTAATAVPETVVAVEA------------AAEEEKKAEESKEEQ 224
           MTAAT VPE  VA  A            AA EEKK EESKEEQ
Sbjct: 121 MTAATVVPEAAVATTAVVAATATVTAAPAAAEEKKEEESKEEQ 163

[Close]

BLAST of PI0003794 vs. TAIR 10
Match: AT3G04620.1 (Alba DNA/RNA-binding protein )

HSP 1 Score: 177.9 bits (450), Expect = 8.7e-45
Identity = 104/138 (75.36%), Postives = 113/138 (81.88%), Query Frame = 0


Query: 86  AVSGATAATETQKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTVVTIAE 145
           A +  TA  ET KKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTVVTI+E
Sbjct: 24  ATTTTTATVETHKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTVVTISE 83

Query: 146 ILKNNGLATEKRVLTSTVGMKDENKGRLVQKAKIEIVLGKSEKFDSLMTAAT--AVPETV 205
           ILKNNGLATEK+VLTSTVGMKDE KG++VQKAKIEIVLGKS+KFDSL+   T    PE  
Sbjct: 84  ILKNNGLATEKKVLTSTVGMKDETKGKMVQKAKIEIVLGKSDKFDSLVPPVTNGKTPEE- 143

Query: 206 VAVEAAAEEEKKAEESKE 222
              EA+AE E   E  +E
Sbjct: 144 ---EASAETEASVEAQEE 157

[Close]

BLAST of PI0003794 vs. TAIR 10
Match: AT1G29250.1 (Alba DNA/RNA-binding protein )

HSP 1 Score: 157.1 bits (396), Expect = 1.6e-38
Identity = 90/139 (64.75%), Postives = 107/139 (76.98%), Query Frame = 0


Query: 84  TIAVSGATAATETQKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTVVTI 143
           T  V+    A +TQKKNRIQVSNTKKPLFFYVNLAKRY+QQ+ +VELSALGMAI TVVT+
Sbjct: 5   TEGVNNMNLAVDTQKKNRIQVSNTKKPLFFYVNLAKRYMQQYTDVELSALGMAIATVVTV 64

Query: 144 AEILKNNGLATEKRVLTSTVGMKDENKGRLVQKAKIEIVLGKSEKFDSLMTAATAVPETV 203
           AEILKNNG A EK+++TSTV +KD+++GR VQKAKIEI L KSEKFD LM          
Sbjct: 65  AEILKNNGFAVEKKIMTSTVDIKDDSRGRPVQKAKIEITLAKSEKFDELM---------- 124

Query: 204 VAVEAAAEEEKKAEESKEE 223
               AAA EEK+A E++E+
Sbjct: 125 ----AAANEEKEAAEAQEQ 129

[Close]

BLAST of PI0003794 vs. TAIR 10
Match: AT2G34160.1 (Alba DNA/RNA-binding protein )

HSP 1 Score: 157.1 bits (396), Expect = 1.6e-38
Identity = 85/122 (69.67%), Postives = 98/122 (80.33%), Query Frame = 0


Query: 84  TIAVSGATAATETQKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTVVTI 143
           T  V+    AT++QKKNRIQVSNTKKPLFFYVNLAKRY+QQ+N+VELSALGMAI TVVT+
Sbjct: 5   TDGVNNMNLATDSQKKNRIQVSNTKKPLFFYVNLAKRYMQQYNDVELSALGMAIATVVTV 64

Query: 144 AEILKNNGLATEKRVLTSTVGMKDENKGRLVQKAKIEIVLGKSEKFDSLMTAATAVPETV 203
            EILKNNG A EK+++TSTV +KD+ +GR VQKAKIEI L KSEKFD LM AA    E  
Sbjct: 65  TEILKNNGFAVEKKIMTSTVDIKDDARGRPVQKAKIEITLVKSEKFDELMAAANEEKEDA 124

Query: 204 VA 206
            A
Sbjct: 125 EA 126

The following BLAST results are available for this feature:

BLAST of PI0003794 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O22969	2.2e-37	69.67	Uncharacterized protein At2g34160 OS=Arabidopsis thaliana OX=3702 GN=At2g34160 P...	[more]

BLAST of PI0003794 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LG69	4.0e-61	97.87	Alba domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G010240 PE=4 S...	[more]
A0A5D3D4G4	6.7e-61	96.48	Alba DNA/RNA-binding protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sca...	[more]
A0A1S3C2U1	6.7e-61	96.48	uncharacterized protein At2g34160 OS=Cucumis melo OX=3656 GN=LOC103496224 PE=4 S...	[more]
A0A6J1KEC8	1.0e-53	81.60	uncharacterized protein At2g34160 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC1...	[more]
A0A6J1G2Y0	1.0e-53	83.54	uncharacterized protein At2g34160-like isoform X1 OS=Cucurbita moschata OX=3662 ...	[more]

BLAST of PI0003794 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004139384.1	8.2e-61	97.87	uncharacterized protein At2g34160 [Cucumis sativus]	[more]
XP_008456222.1	1.4e-60	96.48	PREDICTED: uncharacterized protein At2g34160 [Cucumis melo] >KAA0063590.1 alba D...	[more]
XP_038877259.1	1.8e-55	92.36	uncharacterized protein At2g34160-like [Benincasa hispida]	[more]
XP_022946134.1	2.2e-53	83.54	uncharacterized protein At2g34160-like isoform X1 [Cucurbita moschata] >KAG70303...	[more]
XP_022999100.1	2.2e-53	81.60	uncharacterized protein At2g34160 isoform X1 [Cucurbita maxima]	[more]

BLAST of PI0003794 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G04620.1	8.7e-45	75.36	Alba DNA/RNA-binding protein	[more]
AT1G29250.1	1.6e-38	64.75	Alba DNA/RNA-binding protein	[more]
AT2G34160.1	1.6e-38	69.67	Alba DNA/RNA-binding protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002775	DNA/RNA-binding protein Alba-like	PFAM	PF01918	Alba	coord: 100..162 e-value: 7.3E-13 score: 48.1
IPR036882	Alba-like domain superfamily	GENE3D	3.30.110.20		coord: 98..222 e-value: 4.5E-51 score: 173.6
IPR036882	Alba-like domain superfamily	SUPERFAMILY	82704	AlbA-like	coord: 99..194
IPR014560	Uncharacterised conserved protein UCP030333, DNA/RNA-binding Alba-related	PANTHER	PTHR31947	DNA/RNA-BINDING PROTEIN ALBA 3	coord: 78..220
None	No IPR available	PANTHER	PTHR31947:SF19	ALBA DNA/RNA-BINDING PROTEIN	coord: 78..220

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
PI0003794.1	PI0003794.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0048235	pollen sperm cell differentiation
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003676	nucleic acid binding