PI0003153 (gene) Melon (PI 482460) v1

Overview


Name	PI0003153
Type	gene
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	Retrotransposon gag protein
Location	chr11: 16032948 .. 16034442 (+)
RNA-Seq Expression	PI0003153
Synteny	PI0003153

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGCCGTTGCCGGGGAGCGACGGTAAGTACATCTAAATTCTTTTAGGTTTAATTTCTTTTTAGTTTCTTGATTCTATATTCAATTTAAAAAAAAAATCAAAAAGAGAAAGTTATCTTGCATATTCTTTTTCTCTCCCTTACTTTGCATGTCCCGCTCTTCCAATCCTCACTTAGAATTTTTTGAAGACCTTAATAGAGAAGTGCGTAGAATTAGGAGAAAAAAGAGAGAAGAAATTAATCAACCATTCCTTCAAGTACCTTTAGAAAACCAAGAGCCTACCCTAGAAAACCAAAACCTTGATAGACAAGCCATGGGCCAAGTTAGAGAAAAAACTCTTAGAGAGCTTTCTGAACCTGATGAAGACCAAAGGCCCCTATGTATAGTGATTCCCCCAACAACTCAACCCTTCGAGCTTAAACCTGGACTAATCCATCTCTTACCAATTTATAAAGGTAGCTCAGGTGAAGACCCTCATAAACACCTTAAGGATTTCCATATGGTTTGTGACTCTATGAGACCCCACGGAGTTTCTGAAGAACAACTTAATCTTAGAGCCTTTCCATTCTCCTTAACCGATACAGCCAAACGATGGCTTTATTACTTAGAACCAGGGTCTATCACAACTTGGGGAGGACTTAAAAAGAAATTCCTAGAGAAATTCTTTCCCGCTTCTAGAGCAAATAACATTAGGAAGGAAATCTACGGAATTAGGCAAGCCTTTGGGGAGTCTTTATCAGAATATTGGGAACGTTTCAAAGAGCTTTGCGCTAGTTTTCCCCACCATCATATTTCTGACCCCTCTTTAATACAGTATTTTTATTCTGGACTACTAACCACGGATAGAAATACAGTAGATGCTGCAGCAGGTGGTGCCCTAGCTGATAAAACCCCTACTGAAGCAAGAGAGCTAATTTCACGGATGGCTGAGAACTCACAAAATTTTGGCAACAGAGCATCCGAGCTCGACAATTCCTTAACAAAAGAGGTTAGTGAACTTAAATCACAAATGTTGAATATGACTACATTGCTCACTTCTTTTGTACAAGGTGGAAATGTGAAAGTTGCAAAATGTGGAGTTTGTGGTCTCATTGGACATCCTAATGACAAGTGTCCCGACCTTGTGGAAGAGGCAAATGTCATTAGGAAGTACGATCCTCATGGAAACACTTATAATGCCGGTTGGAGAGACAACCCTAACCTTAGATGGGGAATGACGCCCAACGACCCACACAAGCAACTTCATCCTCAAATAATCAAGGTAGTAATTTGGAAGATTTGGTAAAAGCTCTTGCTACCAATACAATTTCTTTCCAAAATGAAATGAAGCAACAAATGTCCCAATTGACCAATGCAATAAGCAAACTAGAAGGTAAAGGCAAGCTTCCAGCTCAGCCCGATCACGCAAATGTAAGTGCCATCTCGCTTAGAAGCGGTAAAATTCTGGAAACCCCTCCAAGTGAAGAAAAGGTACCTCTAACCCTACCCTTCTAG

mRNA sequence

ATGGCGCCGTTGCCGGGGAGCGACGGTGGAAATGTGAAAGTTGCAAAATGTGGAGTTTGTGGTCTCATTGGACATCCTAATGACAAGTGTCCCGACCTTGTGGAAGAGGCAAATGTCATTAGGAAGTACGATCCTCATGGAAACACTTATAATGCCGGTTGGAGAGACAACCCTAACCTTAGATGGGGAATGACGCCCAACGACCCACACAAGCAACTTCATCCTCAAATAATCAAGCAACAAATGTCCCAATTGACCAATGCAATAAGCAAACTAGAAGGTAAAGGCAAGCTTCCAGCTCAGCCCGATCACGCAAATGTAAGTGCCATCTCGCTTAGAAGCGGTAAAATTCTGGAAACCCCTCCAAGTGAAGAAAAGGTACCTCTAACCCTACCCTTCTAG

Coding sequence (CDS)

ATGGCGCCGTTGCCGGGGAGCGACGGTGGAAATGTGAAAGTTGCAAAATGTGGAGTTTGTGGTCTCATTGGACATCCTAATGACAAGTGTCCCGACCTTGTGGAAGAGGCAAATGTCATTAGGAAGTACGATCCTCATGGAAACACTTATAATGCCGGTTGGAGAGACAACCCTAACCTTAGATGGGGAATGACGCCCAACGACCCACACAAGCAACTTCATCCTCAAATAATCAAGCAACAAATGTCCCAATTGACCAATGCAATAAGCAAACTAGAAGGTAAAGGCAAGCTTCCAGCTCAGCCCGATCACGCAAATGTAAGTGCCATCTCGCTTAGAAGCGGTAAAATTCTGGAAACCCCTCCAAGTGAAGAAAAGGTACCTCTAACCCTACCCTTCTAG

Protein sequence

MAPLPGSDGGNVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPHGNTYNAGWRDNPNLRWGMTPNDPHKQLHPQIIKQQMSQLTNAISKLEGKGKLPAQPDHANVSAISLRSGKILETPPSEEKVPLTLPF

Homology

[Close]

BLAST of PI0003153 vs. ExPASy TrEMBL
Match: E5GBZ4 (Retrotransposon gag protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1)

HSP 1 Score: 174.1 bits (440), Expect = 3.9e-40
Identity = 84/142 (59.15%), Postives = 102/142 (71.83%), Query Frame = 0


Query: 9   GGNVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPHGNTYNAGWRDNPNLRWGMTPND 68
           G  +KV KCGVC L+GHPNDKCP+++E+ N++RKYDP+GNTYN+GWRDNPNLRWG   N 
Sbjct: 67  GTPLKVTKCGVCRLVGHPNDKCPEVIEDVNIVRKYDPYGNTYNSGWRDNPNLRWG-NDNQ 126

Query: 69  PHKQLHP------------------------QIIKQQMSQLTNAISKLEGKGKLPAQPDH 127
            H Q  P                        Q +KQQM+QLT AISK++GKGKLPAQPD+
Sbjct: 127 KHTQAPPTSSNQGTNLEDIIKALATNTLSFQQEMKQQMTQLTTAISKMDGKGKLPAQPDY 186

[Close]

BLAST of PI0003153 vs. ExPASy TrEMBL
Match: A0A1S3CQU8 (uncharacterized protein LOC103503291 OS=Cucumis melo OX=3656 GN=LOC103503291 PE=4 SV=1)

HSP 1 Score: 173.3 bits (438), Expect = 6.7e-40
Identity = 83/142 (58.45%), Postives = 99/142 (69.72%), Query Frame = 0


Query: 9   GGNVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPHGNTYNAGWRDNPNLRWGMTPND 68
           G  +KV KCGVCGL+G+PNDKCP ++E+ N++R+YDPHGNTYN GWRDNPNLRWG   N 
Sbjct: 66  GTALKVTKCGVCGLVGYPNDKCPKVIEDVNIVRRYDPHGNTYNLGWRDNPNLRWG-NDNQ 125

Query: 69  PHKQLHP------------------------QIIKQQMSQLTNAISKLEGKGKLPAQPDH 127
            H Q  P                        Q +KQQM+QLT  ISK++GKGKLPAQPDH
Sbjct: 126 KHTQAPPTSSNQGTNLEDIIKALATNTLSFQQKMKQQMTQLTTVISKMDGKGKLPAQPDH 185

[Close]

BLAST of PI0003153 vs. ExPASy TrEMBL
Match: A0A5A7SQH8 (Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold575G00200 PE=4 SV=1)

HSP 1 Score: 172.9 bits (437), Expect = 8.7e-40
Identity = 82/141 (58.16%), Postives = 99/141 (70.21%), Query Frame = 0


Query: 9   GGNVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPHGNTYNAGWRDNPNLRWGMTPND 68
           G  +KV KCGVCGL+G+PNDKCP ++E+ N++R+YDPHGNTYN GWRDNPNLRWG   N 
Sbjct: 175 GTPLKVTKCGVCGLVGYPNDKCPKVIEDVNIVRRYDPHGNTYNLGWRDNPNLRWG-NDNQ 234

Query: 69  PHKQLHP-----------------------QIIKQQMSQLTNAISKLEGKGKLPAQPDHA 127
            H Q  P                       Q +KQQM+QLT  +SK++GKGKLPAQPDH 
Sbjct: 235 KHTQAPPTSSNQGTNLEDIIALATNTLSFQQEMKQQMTQLTTVLSKMDGKGKLPAQPDHV 294

[Close]

BLAST of PI0003153 vs. ExPASy TrEMBL
Match: A0A5A7U6X0 (Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold678G00210 PE=4 SV=1)

HSP 1 Score: 172.6 bits (436), Expect = 1.1e-39
Identity = 84/142 (59.15%), Postives = 99/142 (69.72%), Query Frame = 0


Query: 9   GGNVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPHGNTYNAGWRDNPNLRWGMTPND 68
           G  +KV KCGVCGL+GHPNDKCP ++E+ N+ R+YDPHGNTYN+GWRDNPNLRWG   N 
Sbjct: 11  GTPLKVTKCGVCGLVGHPNDKCPKMIEDVNIFRRYDPHGNTYNSGWRDNPNLRWG-NDNQ 70

Query: 69  PHKQLHP------------------------QIIKQQMSQLTNAISKLEGKGKLPAQPDH 127
            H Q  P                        Q +KQQM+QLT AISK++GKGKL AQPDH
Sbjct: 71  KHTQAPPTSSNQCTNLEDIIKALATNTLSFEQEMKQQMTQLTTAISKMDGKGKLSAQPDH 130

[Close]

BLAST of PI0003153 vs. ExPASy TrEMBL
Match: A0A5A7T4R3 (Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold119G00210 PE=4 SV=1)

HSP 1 Score: 172.6 bits (436), Expect = 1.1e-39
Identity = 84/142 (59.15%), Postives = 100/142 (70.42%), Query Frame = 0


Query: 9   GGNVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPHGNTYNAGWRDNPNLRWGMTPND 68
           G  +KV KCGVC L+GH NDKCP+++E+ N++RKYDP+GNTYN+GWRDNPNLRWG   N 
Sbjct: 67  GTPLKVTKCGVCRLVGHSNDKCPEVIEDVNIVRKYDPYGNTYNSGWRDNPNLRWG-NDNQ 126

Query: 69  PHKQLHP------------------------QIIKQQMSQLTNAISKLEGKGKLPAQPDH 127
            H Q  P                        Q +KQQM+QLT AISK++GKGKLPAQPDH
Sbjct: 127 KHTQAPPTSSNQGTNLEDIIKALATNTHSFQQEMKQQMTQLTTAISKMDGKGKLPAQPDH 186

[Close]

BLAST of PI0003153 vs. NCBI nr
Match: ADN33993.1 (retrotransposon gag protein [Cucumis melo subsp. melo])

HSP 1 Score: 174.1 bits (440), Expect = 8.1e-40
Identity = 84/142 (59.15%), Postives = 102/142 (71.83%), Query Frame = 0


Query: 9   GGNVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPHGNTYNAGWRDNPNLRWGMTPND 68
           G  +KV KCGVC L+GHPNDKCP+++E+ N++RKYDP+GNTYN+GWRDNPNLRWG   N 
Sbjct: 67  GTPLKVTKCGVCRLVGHPNDKCPEVIEDVNIVRKYDPYGNTYNSGWRDNPNLRWG-NDNQ 126

Query: 69  PHKQLHP------------------------QIIKQQMSQLTNAISKLEGKGKLPAQPDH 127
            H Q  P                        Q +KQQM+QLT AISK++GKGKLPAQPD+
Sbjct: 127 KHTQAPPTSSNQGTNLEDIIKALATNTLSFQQEMKQQMTQLTTAISKMDGKGKLPAQPDY 186

[Close]

BLAST of PI0003153 vs. NCBI nr
Match: XP_008465649.1 (PREDICTED: uncharacterized protein LOC103503291, partial [Cucumis melo])

HSP 1 Score: 173.3 bits (438), Expect = 1.4e-39
Identity = 83/142 (58.45%), Postives = 99/142 (69.72%), Query Frame = 0


Query: 9   GGNVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPHGNTYNAGWRDNPNLRWGMTPND 68
           G  +KV KCGVCGL+G+PNDKCP ++E+ N++R+YDPHGNTYN GWRDNPNLRWG   N 
Sbjct: 66  GTALKVTKCGVCGLVGYPNDKCPKVIEDVNIVRRYDPHGNTYNLGWRDNPNLRWG-NDNQ 125

Query: 69  PHKQLHP------------------------QIIKQQMSQLTNAISKLEGKGKLPAQPDH 127
            H Q  P                        Q +KQQM+QLT  ISK++GKGKLPAQPDH
Sbjct: 126 KHTQAPPTSSNQGTNLEDIIKALATNTLSFQQKMKQQMTQLTTVISKMDGKGKLPAQPDH 185

[Close]

BLAST of PI0003153 vs. NCBI nr
Match: KAA0032798.1 (retrotransposon gag protein [Cucumis melo var. makuwa] >TYK30356.1 retrotransposon gag protein [Cucumis melo var. makuwa])

HSP 1 Score: 172.9 bits (437), Expect = 1.8e-39
Identity = 82/141 (58.16%), Postives = 99/141 (70.21%), Query Frame = 0


Query: 9   GGNVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPHGNTYNAGWRDNPNLRWGMTPND 68
           G  +KV KCGVCGL+G+PNDKCP ++E+ N++R+YDPHGNTYN GWRDNPNLRWG   N 
Sbjct: 175 GTPLKVTKCGVCGLVGYPNDKCPKVIEDVNIVRRYDPHGNTYNLGWRDNPNLRWG-NDNQ 234

Query: 69  PHKQLHP-----------------------QIIKQQMSQLTNAISKLEGKGKLPAQPDHA 127
            H Q  P                       Q +KQQM+QLT  +SK++GKGKLPAQPDH 
Sbjct: 235 KHTQAPPTSSNQGTNLEDIIALATNTLSFQQEMKQQMTQLTTVLSKMDGKGKLPAQPDHV 294

[Close]

BLAST of PI0003153 vs. NCBI nr
Match: KAA0038454.1 (retrotransposon gag protein [Cucumis melo var. makuwa])

HSP 1 Score: 172.6 bits (436), Expect = 2.4e-39
Identity = 84/142 (59.15%), Postives = 100/142 (70.42%), Query Frame = 0


Query: 9   GGNVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPHGNTYNAGWRDNPNLRWGMTPND 68
           G  +KV KCGVC L+GH NDKCP+++E+ N++RKYDP+GNTYN+GWRDNPNLRWG   N 
Sbjct: 67  GTPLKVTKCGVCRLVGHSNDKCPEVIEDVNIVRKYDPYGNTYNSGWRDNPNLRWG-NDNQ 126

Query: 69  PHKQLHP------------------------QIIKQQMSQLTNAISKLEGKGKLPAQPDH 127
            H Q  P                        Q +KQQM+QLT AISK++GKGKLPAQPDH
Sbjct: 127 KHTQAPPTSSNQGTNLEDIIKALATNTHSFQQEMKQQMTQLTTAISKMDGKGKLPAQPDH 186

[Close]

BLAST of PI0003153 vs. NCBI nr
Match: KAA0051064.1 (retrotransposon gag protein [Cucumis melo var. makuwa])

HSP 1 Score: 172.6 bits (436), Expect = 2.4e-39
Identity = 84/142 (59.15%), Postives = 99/142 (69.72%), Query Frame = 0


Query: 9   GGNVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPHGNTYNAGWRDNPNLRWGMTPND 68
           G  +KV KCGVCGL+GHPNDKCP ++E+ N+ R+YDPHGNTYN+GWRDNPNLRWG   N 
Sbjct: 11  GTPLKVTKCGVCGLVGHPNDKCPKMIEDVNIFRRYDPHGNTYNSGWRDNPNLRWG-NDNQ 70

Query: 69  PHKQLHP------------------------QIIKQQMSQLTNAISKLEGKGKLPAQPDH 127
            H Q  P                        Q +KQQM+QLT AISK++GKGKL AQPDH
Sbjct: 71  KHTQAPPTSSNQCTNLEDIIKALATNTLSFEQEMKQQMTQLTTAISKMDGKGKLSAQPDH 130

The following BLAST results are available for this feature:

BLAST of PI0003153 vs.


Match Name	E-value	Identity	Description

BLAST of PI0003153 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
E5GBZ4	3.9e-40	59.15	Retrotransposon gag protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1	[more]
A0A1S3CQU8	6.7e-40	58.45	uncharacterized protein LOC103503291 OS=Cucumis melo OX=3656 GN=LOC103503291 PE=...	[more]
A0A5A7SQH8	8.7e-40	58.16	Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaf...	[more]
A0A5A7U6X0	1.1e-39	59.15	Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaf...	[more]
A0A5A7T4R3	1.1e-39	59.15	Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaf...	[more]

BLAST of PI0003153 vs. NCBI nr


Match Name	E-value	Identity	Description
ADN33993.1	8.1e-40	59.15	retrotransposon gag protein [Cucumis melo subsp. melo]	[more]
XP_008465649.1	1.4e-39	58.45	PREDICTED: uncharacterized protein LOC103503291, partial [Cucumis melo]	[more]
KAA0032798.1	1.8e-39	58.16	retrotransposon gag protein [Cucumis melo var. makuwa] >TYK30356.1 retrotranspos...	[more]
KAA0038454.1	2.4e-39	59.15	retrotransposon gag protein [Cucumis melo var. makuwa]	[more]
KAA0051064.1	2.4e-39	59.15	retrotransposon gag protein [Cucumis melo var. makuwa]	[more]

BLAST of PI0003153 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
PI0003153.1	PI0003153.1	mRNA