PI0002725 (gene) Melon (PI 482460) v1

Overview


Name	PI0002725
Type	gene
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	transcription factor RADIALIS-like
Location	chr11: 27415396 .. 27417630 (+)
RNA-Seq Expression	PI0002725
Synteny	PI0002725

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TACCATTTTTGCCCCTCAACAATGGCTTCCATTTCCTCTTCCTCTCATGACTCTGCCTCCTCTTGGACTCCTAACCAAAACAAAGCCTTTGAAAGGGCTTTGGCTGTCTTTGACAAAGATACCCCTGATCGCTGGCTCAATGTCGCCAACGCCATCGGCGGTGGCAAGACCCCTGATGAAGTCAAGAGACATTTCGACCGTCTCGTCGAAGATGTCAAACACATTGAATCAGGCCGCGTTCCTTTCCCTAAATACACCTCCTCCTCCACCCCTAGAACCTCCAATACTAACATCAAAGACCAAGAACAGAGGTACCTCTTCTTACCTTTTTAAAGTTTTAACCTTTCGAAATATTAAATATATTGTCTCAACTACTAAACTATATTTTTAAGTTGTTTTATATATATATATATATATATATATATATATATATATATATAATTTTTTTACGACAAAAAGTCCAACTTCTAAGTCGCTTTCAACTCACTTTTATTTTGGTTTGCTTTCGAGATTCTCTTCATGTGTATCTCAATAGTTTTTATCTTTTTCTTCTCATCTCGACAATGTTTTTTCCTTCGAAATCCTTCCTTTTCATACCTTATAAAAGTTATACATCTTTTTTCACCTCCATATCCTTGCCATCTCATGTGACTTACTATGTACTTTCAAGTTTTTTTTAAAATCAAACTATAATACAAACAAACCAATTAAAAAAAAAACCAAATTGATTAGACTTTTTTTTTAAAAAAACTAAAAAATAATACAAGCTGCACCAATTTTTCTGCCATCTCCTTCAATCACGTAGCAAAAAAGTAAAAAAAACGAAAATTTCTTTTGTCACATGACAATTGAATAAGCTGCACAAAGATAAATGGGTCGGATCTACTCATTTATATTTTTTAATCAAAGAAAAGGGTATTTGAAAGTTGGTTTATTTTTTTTAGGATAATGGGTTTCAGAAAAAGAGAAAAGCATGCAATCCAATCATACCTCAATTGGTAAATGCAATGTTTTTTATATATATATATAAAAGAAATAAAAAAAGTCAACAGTTTACGAGAAACCCAACCTCGTGCCAGTCACGTGGCTTTCTACCAATAGGGGTGATTAATTAATACCAATAATTGCATTCTTAATATTATAATTAAGTATTAATTATTGGTTTATCTAATCTTATACTAAAAGCAACTTAATTATTTTTTTAATGTTGATATTTTCTTTTCCTGACAAATATCCTACTTGTCGGATTCTATTCTAACAATCCCATTACTTCACAACAATACATCTTTTTTCTTTTCATTTTTTTTTTTCATTTTTCTTTCCATTTTTGGCTTTTTTTTTTTCAAATTAAGAAATATTTCTCTCAAAAACATTATTAGAAGTAAAAAAAAAATGAAAAATGAAAAAAATTTGTGGTACATAAGAATATATATATGTATGTATATAAACTTTTTTAAGTTATACCTTTTTTAAAAAAGAAAAAAAAGTATCAACAAGGATTTATAATAAAAATCCATATGAGTAGCTGAGGAGTCTAATCTATAGAAAATTAACAGAAAATAAATATGATCTTAATTTAAATAATTGAGATCTTATTTGATAACGATTTTATTTCTAATTTTTTAGTTTTTCACCGTTTTTTGTTTTCATTTTAAGAACTAAAAAGAAGCATATATGTTTTCCTTAAAGAAAAGCACCGTGTCTTGATTTAAATCACTAAGGTCTTTTTTATGACGCATATCGCTCTAATATATATATATATAACAAAAAATAACAATAATGATCTTTTTGTCGTGTTTGCTTGTCCTTCTTGTACTACTAGCTCTCAAAGTAATTTAAAAAAAAATACAAATATCTATTTTAGTCTTTGAATTTAAAAATATATCCATTTTGGTTATTACAATTATTTTATTGTCAAGTGTTACCCATTCTTTATCTATTTAGTGTATGAAATTTCAATGCATACTTGAAGTCATATCATCATTTGTCAAATAATTGAGATTAAAGCAATGTCAGAGATCAAAATAGTTATTGTTGTAAGTGATTGGATAAACATGAAAATTAAATTTAGTTTTTGAAAATTGCAATCATGGGCCTAACTCATTTAATTATTGCAGGATGAGAAACATGAAACTTCATTAAATTGGTTGAAATTGAAAGCAAATGGATGGGATTAAGAAGAATGAAAGTGGATTGGTGGTTGCTGTTTTTGCCCCTAAGATAACACAAAAAAAA

mRNA sequence

TACCATTTTTGCCCCTCAACAATGGCTTCCATTTCCTCTTCCTCTCATGACTCTGCCTCCTCTTGGACTCCTAACCAAAACAAAGCCTTTGAAAGGGCTTTGGCTGTCTTTGACAAAGATACCCCTGATCGCTGGCTCAATGTCGCCAACGCCATCGGCGGTGGCAAGACCCCTGATGAAGTCAAGAGACATTTCGACCGTCTCGTCGAAGATGTCAAACACATTGAATCAGGCCGCGTTCCTTTCCCTAAATACACCTCCTCCTCCACCCCTAGAACCTCCAATACTAACATCAAAGACCAAGAACAGAGGATGAGAAACATGAAACTTCATTAAATTGGTTGAAATTGAAAGCAAATGGATGGGATTAAGAAGAATGAAAGTGGATTGGTGGTTGCTGTTTTTGCCCCTAAGATAACACAAAAAAAA

Coding sequence (CDS)

ATGGCTTCCATTTCCTCTTCCTCTCATGACTCTGCCTCCTCTTGGACTCCTAACCAAAACAAAGCCTTTGAAAGGGCTTTGGCTGTCTTTGACAAAGATACCCCTGATCGCTGGCTCAATGTCGCCAACGCCATCGGCGGTGGCAAGACCCCTGATGAAGTCAAGAGACATTTCGACCGTCTCGTCGAAGATGTCAAACACATTGAATCAGGCCGCGTTCCTTTCCCTAAATACACCTCCTCCTCCACCCCTAGAACCTCCAATACTAACATCAAAGACCAAGAACAGAGGATGAGAAACATGAAACTTCATTAA

Protein sequence

MASISSSSHDSASSWTPNQNKAFERALAVFDKDTPDRWLNVANAIGGGKTPDEVKRHFDRLVEDVKHIESGRVPFPKYTSSSTPRTSNTNIKDQEQRMRNMKLH

Homology

[Close]

BLAST of PI0002725 vs. ExPASy Swiss-Prot
Match: Q9SIJ5 (Protein RADIALIS-like 2 OS=Arabidopsis thaliana OX=3702 GN=RL2 PE=2 SV=1)

HSP 1 Score: 114.8 bits (286), Expect = 6.0e-25
Identity = 61/103 (59.22%), Postives = 79/103 (76.70%), Query Frame = 0


Query: 1   MASISSSSHDSASSWTPNQNKAFERALAVFDKDTPDRWLNVANAIGGGKTPDEVKRHFDR 60
           MAS S SS+ S  SWT  QNKAFERALAV+D+DTPDRW NVA A+ GGKTP+E KR +D 
Sbjct: 1   MASGSMSSYGS-GSWTVKQNKAFERALAVYDQDTPDRWHNVARAV-GGKTPEEAKRQYDL 60

Query: 61  LVEDVKHIESGRVPFPKYTSSSTPRTSNTNIKDQEQRMRNMKL 104
           LV D++ IE+G VPFP Y  ++T  ++   ++D+E+RMR+MKL
Sbjct: 61  LVRDIESIENGHVPFPDY-KTTTGNSNRGRLRDEEKRMRSMKL 100

[Close]

BLAST of PI0002725 vs. ExPASy Swiss-Prot
Match: Q58FS3 (Transcription factor RADIALIS OS=Antirrhinum majus OX=4151 GN=RAD PE=1 SV=1)

HSP 1 Score: 113.2 bits (282), Expect = 1.7e-24
Identity = 55/98 (56.12%), Postives = 74/98 (75.51%), Query Frame = 0


Query: 6   SSSHDSASSWTPNQNKAFERALAVFDKDTPDRWLNVANAIGGGKTPDEVKRHFDRLVEDV 65
           +S+  S   W+  +NKAFERALAV+DKDTPDRW NVA A+  G+TP+EVK+H++ LVED+
Sbjct: 2   ASTRGSGRPWSAKENKAFERALAVYDKDTPDRWANVARAV-EGRTPEEVKKHYEILVEDI 61

Query: 66  KHIESGRVPFPKYTSSSTPRTSNTNIKDQEQRMRNMKL 104
           K+IESG+VPFP Y      RT+  N+K  E+R RN+K+
Sbjct: 62  KYIESGKVPFPNY------RTTGGNMKTDEKRFRNLKI 92

[Close]

BLAST of PI0002725 vs. ExPASy Swiss-Prot
Match: F4JVB8 (Protein RADIALIS-like 1 OS=Arabidopsis thaliana OX=3702 GN=RL1 PE=2 SV=1)

HSP 1 Score: 108.2 bits (269), Expect = 5.6e-23
Identity = 57/103 (55.34%), Postives = 75/103 (72.82%), Query Frame = 0


Query: 1   MASISSSSHDSASSWTPNQNKAFERALAVFDKDTPDRWLNVANAIGGGKTPDEVKRHFDR 60
           MAS SS S  S+ SWT  QNKAFE+ALA +D+DTP+RW NVA  + GGKT +EVKRH++ 
Sbjct: 1   MAS-SSMSSQSSGSWTAKQNKAFEQALATYDQDTPNRWQNVAKVV-GGKTTEEVKRHYEL 60

Query: 61  LVEDVKHIESGRVPFPKYTSSSTPRTSNTNIKDQEQRMRNMKL 104
           LV+D+  IE+G VPFP Y +S     +N  +  +E+RMRNM+L
Sbjct: 61  LVQDINSIENGHVPFPNYRTSG--GCTNGRLSQEEKRMRNMRL 99

[Close]

BLAST of PI0002725 vs. ExPASy Swiss-Prot
Match: Q1A173 (Protein RADIALIS-like 6 OS=Arabidopsis thaliana OX=3702 GN=RL6 PE=2 SV=1)

HSP 1 Score: 104.8 bits (260), Expect = 6.2e-22
Identity = 57/101 (56.44%), Postives = 76/101 (75.25%), Query Frame = 0


Query: 4   ISSSSHDSASSWTPNQNKAFERALAVFDKDTPDRWLNVANAIGGGKTPDEVKRHFDRLVE 63
           ++S+S  S S WT +QNK FERALAV+DKDTPDRW NVA A+ GGKT +EVKRH+D LVE
Sbjct: 1   MASNSRSSISPWTFSQNKMFERALAVYDKDTPDRWHNVAKAV-GGKTVEEVKRHYDILVE 60

Query: 64  DVKHIESGRVPFPKYTSSSTPRTSNTNIKDQEQR-MRNMKL 104
           D+ +IE+GRVP P Y    T  +++ +I D + R M+N+K+
Sbjct: 61  DLINIETGRVPLPNY---KTFESNSRSINDFDTRKMKNLKI 97

[Close]

BLAST of PI0002725 vs. ExPASy Swiss-Prot
Match: Q8GW75 (Protein RADIALIS-like 5 OS=Arabidopsis thaliana OX=3702 GN=RL5 PE=3 SV=1)

HSP 1 Score: 100.1 bits (248), Expect = 1.5e-20
Identity = 56/101 (55.45%), Postives = 71/101 (70.30%), Query Frame = 0


Query: 4   ISSSSHDSASSWTPNQNKAFERALAVFDKDTPDRWLNVANAIGGGKTPDEVKRHFDRLVE 63
           ++SSS  S+SSWT  QNK FERALAV+DKDTPDRW NVA A+ G K+ +EVKRH+D LVE
Sbjct: 1   MASSSMSSSSSWTSKQNKMFERALAVYDKDTPDRWQNVAKAV-GSKSAEEVKRHYDILVE 60

Query: 64  DVKHIESGRVPFPKYTSSSTPRTSNTNIKDQEQR-MRNMKL 104
           D+ +IE   VP PKY +      S   I D + R M+NM++
Sbjct: 61  DLMNIEQDLVPLPKYKTVDVGSKSR-GIDDFDLRLMKNMRI 99

[Close]

BLAST of PI0002725 vs. ExPASy TrEMBL
Match: A0A1S3CDK8 (protein RADIALIS-like 2 OS=Cucumis melo OX=3656 GN=LOC103499673 PE=4 SV=1)

HSP 1 Score: 192.2 bits (487), Expect = 1.1e-45
Identity = 101/110 (91.82%), Postives = 103/110 (93.64%), Query Frame = 0


Query: 1   MASISSSSHDSA-SSWTPNQNKAFERALAVFDKDTPDRWLNVANAIGGGKTPDEVKRHFD 60
           MASISSSSHDSA SSWTPNQNKAFERALAVFDKDTPDRWLNVANA+GGGKTPDEVKRHFD
Sbjct: 1   MASISSSSHDSASSSWTPNQNKAFERALAVFDKDTPDRWLNVANAVGGGKTPDEVKRHFD 60

Query: 61  RLVEDVKHIESGRVPFPKYTSSST----PRT-SNTNIKDQEQRMRNMKLH 105
           RLVEDVKHIESGRVPFPKYTSSS+    PRT SN NIKDQEQRMRNMKLH
Sbjct: 61  RLVEDVKHIESGRVPFPKYTSSSSSSSAPRTSSNANIKDQEQRMRNMKLH 110

[Close]

BLAST of PI0002725 vs. ExPASy TrEMBL
Match: A0A0A0LL58 (MYB transcription factor MYB142 OS=Cucumis sativus OX=3659 GN=Csa_2G247060 PE=4 SV=1)

HSP 1 Score: 184.1 bits (466), Expect = 3.0e-43
Identity = 95/105 (90.48%), Postives = 97/105 (92.38%), Query Frame = 0


Query: 1   MASISSSSHDSASSWTPNQNKAFERALAVFDKDTPDRWLNVANAIGGGKTPDEVKRHFDR 60
           MASISSSS    SSWTPNQNKAFERALAVFDKDTPDRWLNVA A+GGGKTPDEVKRHFDR
Sbjct: 1   MASISSSS----SSWTPNQNKAFERALAVFDKDTPDRWLNVAKAVGGGKTPDEVKRHFDR 60

Query: 61  LVEDVKHIESGRVPFPKYT-SSSTPRTSNTNIKDQEQRMRNMKLH 105
           LVEDVKHIESGRVPFPKYT SSS+P TSN NIKDQEQRMRNMKLH
Sbjct: 61  LVEDVKHIESGRVPFPKYTSSSSSPTTSNANIKDQEQRMRNMKLH 101

[Close]

BLAST of PI0002725 vs. ExPASy TrEMBL
Match: A0A6J1JBS7 (protein RADIALIS-like 2 OS=Cucurbita maxima OX=3661 GN=LOC111484324 PE=4 SV=1)

HSP 1 Score: 157.9 bits (398), Expect = 2.3e-35
Identity = 81/104 (77.88%), Postives = 88/104 (84.62%), Query Frame = 0


Query: 1   MASISSSSHDSASSWTPNQNKAFERALAVFDKDTPDRWLNVANAIGGGKTPDEVKRHFDR 60
           MAS+SSS H  +SSWTP +NKAFERALAVFDKDTPDRWLNVA A+GGGKTPDEVK HFD 
Sbjct: 1   MASMSSSHH--SSSWTPKENKAFERALAVFDKDTPDRWLNVAKAVGGGKTPDEVKTHFDL 60

Query: 61  LVEDVKHIESGRVPFPKYTS-SSTPRTSNTNIKDQEQRMRNMKL 104
           LVEDVKHIE G VPFP Y+S +S   TSN NI DQEQRMRN+KL
Sbjct: 61  LVEDVKHIEFGHVPFPNYSSTASATGTSNANINDQEQRMRNLKL 102

[Close]

BLAST of PI0002725 vs. ExPASy TrEMBL
Match: A0A6J1FXX9 (protein RADIALIS-like 2 OS=Cucurbita moschata OX=3662 GN=LOC111448798 PE=4 SV=1)

HSP 1 Score: 155.2 bits (391), Expect = 1.5e-34
Identity = 80/104 (76.92%), Postives = 88/104 (84.62%), Query Frame = 0


Query: 1   MASISSSSHDSASSWTPNQNKAFERALAVFDKDTPDRWLNVANAIGGGKTPDEVKRHFDR 60
           MAS++SS    +SSWTP QNKAFERALAVFDKDTPDRWLNVA A+GGGKTPDEVK HFD 
Sbjct: 1   MASMASSHR--SSSWTPKQNKAFERALAVFDKDTPDRWLNVAKAVGGGKTPDEVKTHFDL 60

Query: 61  LVEDVKHIESGRVPFPKYTS-SSTPRTSNTNIKDQEQRMRNMKL 104
           LVEDVKHIESG VPFP Y+S +S   TSN NI DQEQRMR++KL
Sbjct: 61  LVEDVKHIESGHVPFPNYSSTASASGTSNANINDQEQRMRDLKL 102

[Close]

BLAST of PI0002725 vs. ExPASy TrEMBL
Match: A0A6J1CYR5 (protein RADIALIS-like 2 OS=Momordica charantia OX=3673 GN=LOC111015511 PE=4 SV=1)

HSP 1 Score: 154.8 bits (390), Expect = 1.9e-34
Identity = 76/98 (77.55%), Postives = 87/98 (88.78%), Query Frame = 0


Query: 7   SSHDSASSWTPNQNKAFERALAVFDKDTPDRWLNVANAIGGGKTPDEVKRHFDRLVEDVK 66
           SS DS+ SWTPNQNKAFERALAVFDKDTPDRW NVANA+ GGKT DEVKRHFD LVEDVK
Sbjct: 5   SSRDSSGSWTPNQNKAFERALAVFDKDTPDRWHNVANAV-GGKTADEVKRHFDLLVEDVK 64

Query: 67  HIESGRVPFPKYTSSSTPRTSNTNIKDQEQRMRNMKLH 105
           HIESGR+PFP YT+++T  +SN N+ D+E+RMRN+KLH
Sbjct: 65  HIESGRIPFPNYTATTT-GSSNGNVNDEEKRMRNLKLH 100

[Close]

BLAST of PI0002725 vs. NCBI nr
Match: XP_008460938.1 (PREDICTED: protein RADIALIS-like 2 [Cucumis melo])

HSP 1 Score: 192.2 bits (487), Expect = 2.2e-45
Identity = 101/110 (91.82%), Postives = 103/110 (93.64%), Query Frame = 0


Query: 1   MASISSSSHDSA-SSWTPNQNKAFERALAVFDKDTPDRWLNVANAIGGGKTPDEVKRHFD 60
           MASISSSSHDSA SSWTPNQNKAFERALAVFDKDTPDRWLNVANA+GGGKTPDEVKRHFD
Sbjct: 1   MASISSSSHDSASSSWTPNQNKAFERALAVFDKDTPDRWLNVANAVGGGKTPDEVKRHFD 60

Query: 61  RLVEDVKHIESGRVPFPKYTSSST----PRT-SNTNIKDQEQRMRNMKLH 105
           RLVEDVKHIESGRVPFPKYTSSS+    PRT SN NIKDQEQRMRNMKLH
Sbjct: 61  RLVEDVKHIESGRVPFPKYTSSSSSSSAPRTSSNANIKDQEQRMRNMKLH 110

[Close]

BLAST of PI0002725 vs. NCBI nr
Match: XP_004148844.1 (transcription factor RADIALIS [Cucumis sativus] >KGN61794.1 hypothetical protein Csa_006459 [Cucumis sativus])

HSP 1 Score: 184.1 bits (466), Expect = 6.1e-43
Identity = 95/105 (90.48%), Postives = 97/105 (92.38%), Query Frame = 0


Query: 1   MASISSSSHDSASSWTPNQNKAFERALAVFDKDTPDRWLNVANAIGGGKTPDEVKRHFDR 60
           MASISSSS    SSWTPNQNKAFERALAVFDKDTPDRWLNVA A+GGGKTPDEVKRHFDR
Sbjct: 1   MASISSSS----SSWTPNQNKAFERALAVFDKDTPDRWLNVAKAVGGGKTPDEVKRHFDR 60

Query: 61  LVEDVKHIESGRVPFPKYT-SSSTPRTSNTNIKDQEQRMRNMKLH 105
           LVEDVKHIESGRVPFPKYT SSS+P TSN NIKDQEQRMRNMKLH
Sbjct: 61  LVEDVKHIESGRVPFPKYTSSSSSPTTSNANIKDQEQRMRNMKLH 101

[Close]

BLAST of PI0002725 vs. NCBI nr
Match: XP_038902123.1 (protein RADIALIS-like 2 [Benincasa hispida])

HSP 1 Score: 174.9 bits (442), Expect = 3.7e-40
Identity = 91/105 (86.67%), Postives = 95/105 (90.48%), Query Frame = 0


Query: 1   MASISSSSHDSASSWTPNQNKAFERALAVFDKDTPDRWLNVANAIGGGKTPDEVKRHFDR 60
           MASI SSSHDS  SWTPNQNKAFERALAVFDKDTPDRWLNVANA+GGGKT DEVKRHFD 
Sbjct: 1   MASI-SSSHDS-GSWTPNQNKAFERALAVFDKDTPDRWLNVANAVGGGKTADEVKRHFDL 60

Query: 61  LVEDVKHIESGRVPFPKYTSSSTPRTS-NTNIKDQEQRMRNMKLH 105
           LVEDVKHIESGRVPFP YTS+STP TS N N+ DQEQRMRN+KLH
Sbjct: 61  LVEDVKHIESGRVPFPNYTSTSTPATSDNGNLNDQEQRMRNLKLH 103

[Close]

BLAST of PI0002725 vs. NCBI nr
Match: XP_023515007.1 (transcription factor RADIALIS-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 164.1 bits (414), Expect = 6.5e-37
Identity = 87/104 (83.65%), Postives = 92/104 (88.46%), Query Frame = 0


Query: 1   MASISSSSHDSASSWTPNQNKAFERALAVFDKDTPDRWLNVANAIGGGKTPDEVKRHFDR 60
           MASI SSSHDS +SW+PNQNKAFERALAVFDKDTPDRWLNVA A+ G KT DEVKRHF+ 
Sbjct: 1   MASI-SSSHDS-TSWSPNQNKAFERALAVFDKDTPDRWLNVAKAV-GDKTADEVKRHFEL 60

Query: 61  LVEDVKHIESGRVPFPKYTSSSTPRTSNTNIKDQEQRMRNMKLH 105
           LVEDVKHIESG VPFP YTSSS PRTS+ NI DQEQRMRNMKLH
Sbjct: 61  LVEDVKHIESGLVPFPNYTSSSAPRTSHDNINDQEQRMRNMKLH 101

[Close]

BLAST of PI0002725 vs. NCBI nr
Match: XP_023513343.1 (protein RADIALIS-like 2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 161.8 bits (408), Expect = 3.2e-36
Identity = 82/104 (78.85%), Postives = 89/104 (85.58%), Query Frame = 0


Query: 1   MASISSSSHDSASSWTPNQNKAFERALAVFDKDTPDRWLNVANAIGGGKTPDEVKRHFDR 60
           MAS+SSS H  +SSWTP QNKAFERALAVFDKDTPDRWLNVA A+GGGKTPDEVK HFD 
Sbjct: 1   MASMSSSHH--SSSWTPKQNKAFERALAVFDKDTPDRWLNVAKAVGGGKTPDEVKTHFDL 60

Query: 61  LVEDVKHIESGRVPFPKYTS-SSTPRTSNTNIKDQEQRMRNMKL 104
           LVEDVKHIESG VPFP Y+S +S   TSN N+ DQEQRMRN+KL
Sbjct: 61  LVEDVKHIESGHVPFPNYSSTASASETSNANVSDQEQRMRNLKL 102

[Close]

BLAST of PI0002725 vs. TAIR 10
Match: AT2G21650.1 (Homeodomain-like superfamily protein )

HSP 1 Score: 114.8 bits (286), Expect = 4.2e-26
Identity = 61/103 (59.22%), Postives = 79/103 (76.70%), Query Frame = 0


Query: 1   MASISSSSHDSASSWTPNQNKAFERALAVFDKDTPDRWLNVANAIGGGKTPDEVKRHFDR 60
           MAS S SS+ S  SWT  QNKAFERALAV+D+DTPDRW NVA A+ GGKTP+E KR +D 
Sbjct: 1   MASGSMSSYGS-GSWTVKQNKAFERALAVYDQDTPDRWHNVARAV-GGKTPEEAKRQYDL 60

Query: 61  LVEDVKHIESGRVPFPKYTSSSTPRTSNTNIKDQEQRMRNMKL 104
           LV D++ IE+G VPFP Y  ++T  ++   ++D+E+RMR+MKL
Sbjct: 61  LVRDIESIENGHVPFPDY-KTTTGNSNRGRLRDEEKRMRSMKL 100

[Close]

BLAST of PI0002725 vs. TAIR 10
Match: AT4G39250.1 (RAD-like 1 )

HSP 1 Score: 108.2 bits (269), Expect = 4.0e-24
Identity = 57/103 (55.34%), Postives = 75/103 (72.82%), Query Frame = 0


Query: 1   MASISSSSHDSASSWTPNQNKAFERALAVFDKDTPDRWLNVANAIGGGKTPDEVKRHFDR 60
           MAS SS S  S+ SWT  QNKAFE+ALA +D+DTP+RW NVA  + GGKT +EVKRH++ 
Sbjct: 1   MAS-SSMSSQSSGSWTAKQNKAFEQALATYDQDTPNRWQNVAKVV-GGKTTEEVKRHYEL 60

Query: 61  LVEDVKHIESGRVPFPKYTSSSTPRTSNTNIKDQEQRMRNMKL 104
           LV+D+  IE+G VPFP Y +S     +N  +  +E+RMRNM+L
Sbjct: 61  LVQDINSIENGHVPFPNYRTSG--GCTNGRLSQEEKRMRNMRL 99

[Close]

BLAST of PI0002725 vs. TAIR 10
Match: AT1G75250.2 (RAD-like 6 )

HSP 1 Score: 104.8 bits (260), Expect = 4.4e-23
Identity = 57/101 (56.44%), Postives = 76/101 (75.25%), Query Frame = 0


Query: 4   ISSSSHDSASSWTPNQNKAFERALAVFDKDTPDRWLNVANAIGGGKTPDEVKRHFDRLVE 63
           ++S+S  S S WT +QNK FERALAV+DKDTPDRW NVA A+ GGKT +EVKRH+D LVE
Sbjct: 1   MASNSRSSISPWTFSQNKMFERALAVYDKDTPDRWHNVAKAV-GGKTVEEVKRHYDILVE 60

Query: 64  DVKHIESGRVPFPKYTSSSTPRTSNTNIKDQEQR-MRNMKL 104
           D+ +IE+GRVP P Y    T  +++ +I D + R M+N+K+
Sbjct: 61  DLINIETGRVPLPNY---KTFESNSRSINDFDTRKMKNLKI 97

[Close]

BLAST of PI0002725 vs. TAIR 10
Match: AT1G75250.1 (RAD-like 6 )

HSP 1 Score: 102.8 bits (255), Expect = 1.7e-22
Identity = 54/86 (62.79%), Postives = 66/86 (76.74%), Query Frame = 0


Query: 4  ISSSSHDSASSWTPNQNKAFERALAVFDKDTPDRWLNVANAIGGGKTPDEVKRHFDRLVE 63
          ++S+S  S S WT +QNK FERALAV+DKDTPDRW NVA A+ GGKT +EVKRH+D LVE
Sbjct: 1  MASNSRSSISPWTFSQNKMFERALAVYDKDTPDRWHNVAKAV-GGKTVEEVKRHYDILVE 60

Query: 64 DVKHIESGRVPFPKY-TSSSTPRTSN 89
          D+ +IE+GRVP P Y T  S  R+ N
Sbjct: 61 DLINIETGRVPLPNYKTFESNSRSIN 85

[Close]

BLAST of PI0002725 vs. TAIR 10
Match: AT1G19510.1 (RAD-like 5 )

HSP 1 Score: 100.1 bits (248), Expect = 1.1e-21
Identity = 56/101 (55.45%), Postives = 71/101 (70.30%), Query Frame = 0


Query: 4   ISSSSHDSASSWTPNQNKAFERALAVFDKDTPDRWLNVANAIGGGKTPDEVKRHFDRLVE 63
           ++SSS  S+SSWT  QNK FERALAV+DKDTPDRW NVA A+ G K+ +EVKRH+D LVE
Sbjct: 1   MASSSMSSSSSWTSKQNKMFERALAVYDKDTPDRWQNVAKAV-GSKSAEEVKRHYDILVE 60

Query: 64  DVKHIESGRVPFPKYTSSSTPRTSNTNIKDQEQR-MRNMKL 104
           D+ +IE   VP PKY +      S   I D + R M+NM++
Sbjct: 61  DLMNIEQDLVPLPKYKTVDVGSKSR-GIDDFDLRLMKNMRI 99

The following BLAST results are available for this feature:

BLAST of PI0002725 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SIJ5	6.0e-25	59.22	Protein RADIALIS-like 2 OS=Arabidopsis thaliana OX=3702 GN=RL2 PE=2 SV=1	[more]
Q58FS3	1.7e-24	56.12	Transcription factor RADIALIS OS=Antirrhinum majus OX=4151 GN=RAD PE=1 SV=1	[more]
F4JVB8	5.6e-23	55.34	Protein RADIALIS-like 1 OS=Arabidopsis thaliana OX=3702 GN=RL1 PE=2 SV=1	[more]
Q1A173	6.2e-22	56.44	Protein RADIALIS-like 6 OS=Arabidopsis thaliana OX=3702 GN=RL6 PE=2 SV=1	[more]
Q8GW75	1.5e-20	55.45	Protein RADIALIS-like 5 OS=Arabidopsis thaliana OX=3702 GN=RL5 PE=3 SV=1	[more]

BLAST of PI0002725 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3CDK8	1.1e-45	91.82	protein RADIALIS-like 2 OS=Cucumis melo OX=3656 GN=LOC103499673 PE=4 SV=1	[more]
A0A0A0LL58	3.0e-43	90.48	MYB transcription factor MYB142 OS=Cucumis sativus OX=3659 GN=Csa_2G247060 PE=4 ...	[more]
A0A6J1JBS7	2.3e-35	77.88	protein RADIALIS-like 2 OS=Cucurbita maxima OX=3661 GN=LOC111484324 PE=4 SV=1	[more]
A0A6J1FXX9	1.5e-34	76.92	protein RADIALIS-like 2 OS=Cucurbita moschata OX=3662 GN=LOC111448798 PE=4 SV=1	[more]
A0A6J1CYR5	1.9e-34	77.55	protein RADIALIS-like 2 OS=Momordica charantia OX=3673 GN=LOC111015511 PE=4 SV=1	[more]

BLAST of PI0002725 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008460938.1	2.2e-45	91.82	PREDICTED: protein RADIALIS-like 2 [Cucumis melo]	[more]
XP_004148844.1	6.1e-43	90.48	transcription factor RADIALIS [Cucumis sativus] >KGN61794.1 hypothetical protein...	[more]
XP_038902123.1	3.7e-40	86.67	protein RADIALIS-like 2 [Benincasa hispida]	[more]
XP_023515007.1	6.5e-37	83.65	transcription factor RADIALIS-like [Cucurbita pepo subsp. pepo]	[more]
XP_023513343.1	3.2e-36	78.85	protein RADIALIS-like 2 [Cucurbita pepo subsp. pepo]	[more]

BLAST of PI0002725 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G21650.1	4.2e-26	59.22	Homeodomain-like superfamily protein	[more]
AT4G39250.1	4.0e-24	55.34	RAD-like 1	[more]
AT1G75250.2	4.4e-23	56.44	RAD-like 6	[more]
AT1G75250.1	1.7e-22	62.79	RAD-like 6	[more]
AT1G19510.1	1.1e-21	55.45	RAD-like 5	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001005	SANT/Myb domain	SMART	SM00717	sant	coord: 11..64 e-value: 9.4E-4 score: 28.5
IPR001005	SANT/Myb domain	PROSITE	PS50090	MYB_LIKE	coord: 7..62 score: 6.097918
None	No IPR available	GENE3D	1.10.10.60		coord: 5..75 e-value: 1.4E-21 score: 78.0
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 75..94
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 73..104
None	No IPR available	PANTHER	PTHR43952:SF53	TRANSCRIPTION FACTOR MYB/SANT FAMILY-RELATED	coord: 5..99
IPR044636	Transcription factor RADIALIS-like	PANTHER	PTHR43952	MYB FAMILY TRANSCRIPTION FACTOR-RELATED	coord: 5..99
IPR009057	Homeobox-like domain superfamily	SUPERFAMILY	46689	Homeodomain-like	coord: 13..70

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
PI0002725.1	PI0002725.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
molecular_function	GO:0003700	DNA-binding transcription factor activity