PI0002563 (gene) Melon (PI 482460) v1

Overview
NamePI0002563
Typegene
OrganismCucumis metuliferus (Melon (PI 482460) v1)
DescriptionRetrotransposon protein
Locationchr11: 13216522 .. 13218074 (+)
RNA-Seq ExpressionPI0002563
SyntenyPI0002563
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCAAGTTCTTCAAGAGCACCCAAACACACATGGACTAAAGAGGAAGAAGCGAAGTTGGTTGAGTGTTTGGTGGAATTGGTTTCATCTGGCAGGTGGAGGTCAGATAATGGGACATTTCGACCTGGATATTTAGCACAATTACAACAGATGATGGCGAAGAAGTTGCCCGACACTAACATCCAAGGATCACCGACTATTGATTGTCGTGTGAAATCCCTTAAGAAAGCTTATCAGGCAATTGCAGAAATGAGGGGGTCATCCTGTAATGGGTTTGGGTGGAATGAAGAATATCAATGCATCATTGCAGAACGGGACTTGTTTAATAGTTGGGTCAAGGTACAATTTTCATAATGTGAATTTTATATACTTTTGAAATCACAACCATCAACTAATCTGTCTGTTTCATGTTTGTACAAAGTCATCCTGGGGCCAAAGGACTTTTACACAAATCATTTCCATATTATGACGATTTGTCGTATGTGTTCGGTAGAGGTTGGGCAACAGGAGCACGTGCGGAGACCTTTGCTGACGTGGGATCTAATGTGCCAAACAGTTTTAATGACAGTGTTCCACTTGATGATCTACATGATGAAGACATCCCGACAATGTATAGCCAAGGAGTGGATATGTCCCCAGATGACATGGTAGGAACATGTGCAGGTCGATAAAGTGAAGGACGAAATTGTTCAAGTGGGAGTAAGAGGAAACGGGGTGGCTAACATAATGAAACAGTGGAGGTGATCAGGAATGCAATGGACTTTACGAATGATCAATTGAAGGCAATTGCTGATTGGCCAAAAGAGAAGCGTGCAACAGAGGTTGAATTGCATGCTGAAGTCGTGAAACAACTGGATGATATCCCTGAACTACGGAGCCGAGATAGAGTAAAGCTTATGCGAATATTATTCCGTAGTGTTGATGACACACAGAGATTCCTGTCGGTCCCAACGAAACTTAAATTGGAGTATTGCAGTATTCTCTTGGAAGAAAATGTTTGACCCGTTTCCGATTTTATAACTTTGTATGTAAATTATGTGAACTTGTTATCTATTAGTTTGTATAGTCCTATGGTTAATTATGAATGTCATGGAAAATTTATATTTCACTAAATACATATTGAAGATTTGTTTCTTTGTGTTGTTTTCTTATTTTCTAAAATTCGTCCACGATTTATACGGATTATCTCTAACATAATTTAAAAAACGATCACCTAAACGAATGAGGAAATTACTTTATGGAAGTTATAGTTCAATTTTGATAAGACTATTTTCTTAGGAAAATATCTATCTTAATTATTAATAATAATTGCAAATACTTATCAATATTGTATTTTTGTATAGGAAATAACACAAAGCCCCTTCACAAACCCTTGTGCACAAAAGCAAGCTAAAACAAGCTTCTTGCGGCCAAAAACCGTGAAATACAAATTCAAGGGCAAAATAGTAATTCTCCTGGAAGTATTCAAAAACCTTCTTCGCGGCAAAACTACTTCAGAACGCGTAGCTCATCGCAGACTGCCGACTTCGCGAGGCAAATGCTTCACAACCTGA

mRNA sequence

ATGGCAAGTTCTTCAAGAGCACCCAAACACACATGGACTAAAGAGGAAGAAGCGAAGTTGGTTGAGTGTTTGGTGGAATTGGTTTCATCTGGCAGGTGGAGGTCAGATAATGGGACATTTCGACCTGGATATTTAGCACAATTACAACAGATGATGGCGAAGAAGTTGCCCGACACTAACATCCAAGGATCACCGACTATTGATTGTCGTGTGAAATCCCTTAAGAAAGCTTATCAGGCAATTGCAGAAATGAGGGGGTCATCCTGTAATGGGTTTGGGTGGAATGAAGAATATCAATGCATCATTGCAGAACGGGACTTGTTTAATAGTTGGGTCAAGGACTTTTACACAAATCATTTCCATATTATGACGATTTGTCGTATGTGTTCGGTAGAGGTTGGGCAACAGGAGCACGTGCGGAGACCTTTGCTGACGTGGGATCTAATGTGCCAAACAGTTTTAATGACAGTCGATAAAGTGAAGGACGAAATTGTTCAAGTGGGAGTAAGAGGAAACGGGGCAATTGCTGATTGGCCAAAAGAGAAGCGTGCAACAGAGGTTGAATTGCATGCTGAAGTCGTGAAACAACTGGATGATATCCCTGAACTACGGAGCCGAGATAGAGTAAAGCTTATGCGAATATTATTCCGTAGTGTTGATGACACACAGAGATTCCTGTCGGTCCCAACGAAACTTAAATTGGAGTATTGCAGTATTCTCTTGGAAGAAAATGAAATAACACAAAGCCCCTTCACAAACCCTTGTGCACAAAAGCAAGCTAAAACAAGCTTCTTGCGGCCAAAAACCGTGAAATACAAATTCAAGGGCAAAATAGTAATTCTCCTGGAAGTATTCAAAAACCTTCTTCGCGGCAAAACTACTTCAGAACGCGTAGCTCATCGCAGACTGCCGACTTCGCGAGGCAAATGCTTCACAACCTGA

Coding sequence (CDS)

ATGGCAAGTTCTTCAAGAGCACCCAAACACACATGGACTAAAGAGGAAGAAGCGAAGTTGGTTGAGTGTTTGGTGGAATTGGTTTCATCTGGCAGGTGGAGGTCAGATAATGGGACATTTCGACCTGGATATTTAGCACAATTACAACAGATGATGGCGAAGAAGTTGCCCGACACTAACATCCAAGGATCACCGACTATTGATTGTCGTGTGAAATCCCTTAAGAAAGCTTATCAGGCAATTGCAGAAATGAGGGGGTCATCCTGTAATGGGTTTGGGTGGAATGAAGAATATCAATGCATCATTGCAGAACGGGACTTGTTTAATAGTTGGGTCAAGGACTTTTACACAAATCATTTCCATATTATGACGATTTGTCGTATGTGTTCGGTAGAGGTTGGGCAACAGGAGCACGTGCGGAGACCTTTGCTGACGTGGGATCTAATGTGCCAAACAGTTTTAATGACAGTCGATAAAGTGAAGGACGAAATTGTTCAAGTGGGAGTAAGAGGAAACGGGGCAATTGCTGATTGGCCAAAAGAGAAGCGTGCAACAGAGGTTGAATTGCATGCTGAAGTCGTGAAACAACTGGATGATATCCCTGAACTACGGAGCCGAGATAGAGTAAAGCTTATGCGAATATTATTCCGTAGTGTTGATGACACACAGAGATTCCTGTCGGTCCCAACGAAACTTAAATTGGAGTATTGCAGTATTCTCTTGGAAGAAAATGAAATAACACAAAGCCCCTTCACAAACCCTTGTGCACAAAAGCAAGCTAAAACAAGCTTCTTGCGGCCAAAAACCGTGAAATACAAATTCAAGGGCAAAATAGTAATTCTCCTGGAAGTATTCAAAAACCTTCTTCGCGGCAAAACTACTTCAGAACGCGTAGCTCATCGCAGACTGCCGACTTCGCGAGGCAAATGCTTCACAACCTGA

Protein sequence

MASSSRAPKHTWTKEEEAKLVECLVELVSSGRWRSDNGTFRPGYLAQLQQMMAKKLPDTNIQGSPTIDCRVKSLKKAYQAIAEMRGSSCNGFGWNEEYQCIIAERDLFNSWVKDFYTNHFHIMTICRMCSVEVGQQEHVRRPLLTWDLMCQTVLMTVDKVKDEIVQVGVRGNGAIADWPKEKRATEVELHAEVVKQLDDIPELRSRDRVKLMRILFRSVDDTQRFLSVPTKLKLEYCSILLEENEITQSPFTNPCAQKQAKTSFLRPKTVKYKFKGKIVILLEVFKNLLRGKTTSERVAHRRLPTSRGKCFTT
Homology
BLAST of PI0002563 vs. ExPASy TrEMBL
Match: A0A5A7U0H7 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold648G002060 PE=4 SV=1)

HSP 1 Score: 276.2 bits (705), Expect = 1.7e-70
Identity = 157/313 (50.16%), Postives = 186/313 (59.42%), Query Frame = 0

Query: 1   MASSSRAPKHTWTKEEEAKLVECLVELVSSGRWRSDNGTFRPGYLAQLQQMMAKKLPDTN 60
           MAS SRAPKHTWTKEEE K VECLVELVSSG WRSDNGTF+PGYLAQLQ+MMA+KLP TN
Sbjct: 1   MASLSRAPKHTWTKEEEEKFVECLVELVSSGGWRSDNGTFQPGYLAQLQRMMAEKLPGTN 60

Query: 61  IQGSPTIDCRVKSLKKAYQAIAEMRGSSCNGFGWNEEYQCIIAERDLFNSWVKD------ 120
           IQ S TIDC VKSLKK Y AIAEMRG SC+GFGWNEE+QCIIAERDLF+SW+K       
Sbjct: 61  IQESSTIDCHVKSLKKTYHAIAEMRGPSCSGFGWNEEFQCIIAERDLFDSWIKSHPAAKG 120

Query: 121 --------------------------------------------------------FYTN 180
                                                                    Y+ 
Sbjct: 121 LLHKSFPYYDDLSYVFGKDRATGARSETFPNVGSNVSNMFNDTIPLGDSHDEDIPTMYSQ 180

Query: 181 HFHIMTICRMCSVEVGQQEHVRRPLLTWDLMCQTV---------LMTVDKVKDEIVQVGV 240
             H M+   M  +  GQ    R         C +V           TV+ ++  +++ G 
Sbjct: 181 GVH-MSPDEMFGIRAGQASERRN--------CSSVSKRKRGSERYETVEVIR-SVMEFGN 240

Query: 241 RGNGAIADWPKEKRATEVELHAEVVKQLDDIPELRSRDRVKLMRILFRSVDDTQRFLSVP 243
               AIADWPKEKRA EVE+ A+VVKQL DIP+LRS+DR KLM+ILFRS++  + FLS+P
Sbjct: 241 EQLKAIADWPKEKRAMEVEMRAQVVKQLQDIPKLRSQDRAKLMQILFRSLEAIEGFLSIP 300

BLAST of PI0002563 vs. ExPASy TrEMBL
Match: A0A1S3B4L3 (uncharacterized protein LOC103485953 OS=Cucumis melo OX=3656 GN=LOC103485953 PE=4 SV=1)

HSP 1 Score: 276.2 bits (705), Expect = 1.7e-70
Identity = 157/313 (50.16%), Postives = 186/313 (59.42%), Query Frame = 0

Query: 1   MASSSRAPKHTWTKEEEAKLVECLVELVSSGRWRSDNGTFRPGYLAQLQQMMAKKLPDTN 60
           MAS SRAPKHTWTKEEE K VECLVELVSSG WRSDNGTF+PGYLAQLQ+MMA+KLP TN
Sbjct: 1   MASLSRAPKHTWTKEEEEKFVECLVELVSSGGWRSDNGTFQPGYLAQLQRMMAEKLPGTN 60

Query: 61  IQGSPTIDCRVKSLKKAYQAIAEMRGSSCNGFGWNEEYQCIIAERDLFNSWVKD------ 120
           IQ S TIDC VKSLKK Y AIAEMRG SC+GFGWNEE+QCIIAERDLF+SW+K       
Sbjct: 61  IQESSTIDCHVKSLKKTYHAIAEMRGPSCSGFGWNEEFQCIIAERDLFDSWIKSHPAAKG 120

Query: 121 --------------------------------------------------------FYTN 180
                                                                    Y+ 
Sbjct: 121 LLHKSFPYYDDLSYVFGKDRATGARSETFPNVGSNVSNMFNDTIPLGDSHDEDIPTMYSQ 180

Query: 181 HFHIMTICRMCSVEVGQQEHVRRPLLTWDLMCQTV---------LMTVDKVKDEIVQVGV 240
             H M+   M  +  GQ    R         C +V           TV+ ++  +++ G 
Sbjct: 181 GVH-MSPDEMFGIRAGQASERRN--------CSSVSKRKRGSERYETVEVIR-SVMEFGN 240

Query: 241 RGNGAIADWPKEKRATEVELHAEVVKQLDDIPELRSRDRVKLMRILFRSVDDTQRFLSVP 243
               AIADWPKEKRA EVE+ A+VVKQL DIP+LRS+DR KLM+ILFRS++  + FLS+P
Sbjct: 241 EQLKAIADWPKEKRAMEVEMRAQVVKQLQDIPKLRSQDRAKLMQILFRSLEAIEGFLSIP 300

BLAST of PI0002563 vs. ExPASy TrEMBL
Match: A0A5D3BZU3 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold409G00280 PE=4 SV=1)

HSP 1 Score: 222.6 bits (566), Expect = 2.3e-54
Identity = 130/263 (49.43%), Postives = 158/263 (60.08%), Query Frame = 0

Query: 1   MASSSRAPKHTWTKEEEAKLVECLVELVSSGRWRSDNGTFRPGYLAQLQQMMAKKLPDTN 60
           MASSSRA KH WTKEEEAKLVECLVELVS+G WRSDNGTFR GYL QLQ+MMA+KLPDTN
Sbjct: 1   MASSSRATKHAWTKEEEAKLVECLVELVSAGGWRSDNGTFRHGYLTQLQRMMAEKLPDTN 60

Query: 61  IQGSPTIDCRVKSLKKA--------YQAIAEMRGS-----------SCNGFGWNEEYQCI 120
           IQGSPTIDCR     K         Y  ++ + G+           +  G   +  +   
Sbjct: 61  IQGSPTIDCRSHPAAKGLLHKSFPYYDDLSYVFGNDGATGAHSETFADGGSNVSNMFNDG 120

Query: 121 IAERDLFNSWVKDFYTNHFHIMTICRMCSVEVGQQEHVRRPLLTWDLMCQTVLMTVDKVK 180
           +   D  N  +   Y+   H M++  +  +  GQ    R           +    + +V 
Sbjct: 121 VPLGDSHNQDILTIYSQGVH-MSLDEIFGIRAGQASERRNYSSGSKRKRGSKHYEMVEVI 180

Query: 181 DEIVQVGVRGNGAIADWPKEKRATEVELHAEVVKQLDDIPELRSRDRVKLMRILFRSVDD 240
               + G      I DWPKEKRATEVEL  EVVKQL DIP+LRS+DR KLM+ILFRSV+ 
Sbjct: 181 SSATEFGNDQLKTITDWPKEKRATEVELRTEVVKQLQDIPQLRSQDRAKLMQILFRSVEA 240

Query: 241 TQRFLSVPTKLKLEYCSILLEEN 245
            + FLS+PTKLKLEYC+ILLE N
Sbjct: 241 IEGFLSIPTKLKLEYCNILLENN 262

BLAST of PI0002563 vs. ExPASy TrEMBL
Match: A0A5A7TDD6 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold205G00890 PE=4 SV=1)

HSP 1 Score: 214.2 bits (544), Expect = 8.0e-52
Identity = 117/278 (42.09%), Postives = 161/278 (57.91%), Query Frame = 0

Query: 1   MASSSRAPKHTWTKEEEAKLVECLVELVSSGRWRSDNGTFRPGYLAQLQQMMAKKLPDTN 60
           M SS R PKH+WTKEEEA LVECLVELV++G WR DNGTFRPGYL QL++MM  K+ D N
Sbjct: 55  MTSSLRLPKHSWTKEEEAGLVECLVELVNAGGWRFDNGTFRPGYLNQLERMMTFKILDCN 114

Query: 61  IQGSPTIDCRVKSLKKAYQAIAEMRGSSCNGFGWNEEYQCIIAERDLFNSWVKDF----- 120
           I  SP  D R+K +K+ + A+AEMRG +C+GFGWN+E +CI+AE+++FN W+K F     
Sbjct: 115 IHASPN-DSRIKLMKRMFHALAEMRGPTCSGFGWNDEQKCIVAEKEVFNDWIKSFADVGS 174

Query: 121 ----------------------YTNHFHIMTICRMCSVEVGQQEH------VRRPLLTWD 180
                                 Y    ++ +   M +     +EH       +R      
Sbjct: 175 NDPAGYDAFLADAAPDMDFPPMYNQGLNMSSDDLMGTRTAWVREHRNVSSGSKRKRAGHS 234

Query: 181 LMCQTVLMTVDKVKDEIVQVGVRGNGAIADWPKEKRATEVELHAEVVKQLDDIPELRSRD 240
                ++ T+ + ++E +         IA+WP  +R    E   EVV+QL+ IPEL   D
Sbjct: 235 ADSGDIIRTLIEYENEQL-------NHIAEWPALQRQDASETRQEVVRQLEAIPELTLMD 294

Query: 241 RVKLMRILFRSVDDTQRFLSVPTKLKLEYCSILLEENE 246
           R +LMRIL R+VDD + FL VP  +K  YCSI+L+EN+
Sbjct: 295 RCRLMRILMRNVDDMKAFLDVPNNMKYPYCSIILQENQ 324

BLAST of PI0002563 vs. ExPASy TrEMBL
Match: A0A5A7U216 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold498G001370 PE=4 SV=1)

HSP 1 Score: 211.1 bits (536), Expect = 6.8e-51
Identity = 121/280 (43.21%), Postives = 160/280 (57.14%), Query Frame = 0

Query: 1   MASSSRAPKHTWTKEEEAKLVECLVELVSSGRWRSDNGTFRPGYLAQLQQMMAKKLPDTN 60
           M SSSR PKHTWTKEEE  LVECLVELV++G WRSDNGTFRPGYL QL +MMA K+P  N
Sbjct: 1   MTSSSRLPKHTWTKEEEVGLVECLVELVNAGGWRSDNGTFRPGYLNQLARMMAFKIPGCN 60

Query: 61  IQGSPTIDCRVKSLKKAYQAIAEMRGSSCNGFGWNEEYQCIIAERDLFNSW----VKDFY 120
           I  S TID R+K +K+ + A+AEMRG +C+GFGWN+E +CIIAE+++F+ W     K   
Sbjct: 61  IHAS-TIDSRIKLMKRMFHALAEMRGPNCSGFGWNDEKKCIIAEKEVFDDWSHPAAKGLL 120

Query: 121 TNHF-HIMTICRMCS------------VEVGQQEHVRRPLLTWDLMCQT----------- 180
              F H   +  +               ++G  +         D +  T           
Sbjct: 121 NKSFVHYDELSYVFGKDPATGGRAESFTDIGSNDPAGYDAFAADAVPDTDFPPMYSPGLN 180

Query: 181 ----VLMTVDKVKDEIVQVGVR-GN---GAIADWPKEKRATEVELHAEVVKQLDDIPELR 240
                LM     + +IV+  V  GN     IA+WP  +R    +   E+V+QL+ IPEL 
Sbjct: 181 MSPDDLMETRTARWDIVRTAVEYGNEQLHRIAEWPILQRQDATQTRQEIVRQLEAIPELT 240

Query: 241 SRDRVKLMRILFRSVDDTQRFLSVPTKLKLEYCSILLEEN 245
             DR +LMRI+ R+VDD + FL VP  +   YCSI+L+EN
Sbjct: 241 LMDRCRLMRIIMRNVDDMKAFLEVPDNMNYPYCSIILQEN 279

BLAST of PI0002563 vs. NCBI nr
Match: XP_008441954.1 (PREDICTED: uncharacterized protein LOC103485953 [Cucumis melo] >KAA0047736.1 retrotransposon protein [Cucumis melo var. makuwa] >TYK08388.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 276.2 bits (705), Expect = 3.6e-70
Identity = 157/313 (50.16%), Postives = 186/313 (59.42%), Query Frame = 0

Query: 1   MASSSRAPKHTWTKEEEAKLVECLVELVSSGRWRSDNGTFRPGYLAQLQQMMAKKLPDTN 60
           MAS SRAPKHTWTKEEE K VECLVELVSSG WRSDNGTF+PGYLAQLQ+MMA+KLP TN
Sbjct: 1   MASLSRAPKHTWTKEEEEKFVECLVELVSSGGWRSDNGTFQPGYLAQLQRMMAEKLPGTN 60

Query: 61  IQGSPTIDCRVKSLKKAYQAIAEMRGSSCNGFGWNEEYQCIIAERDLFNSWVKD------ 120
           IQ S TIDC VKSLKK Y AIAEMRG SC+GFGWNEE+QCIIAERDLF+SW+K       
Sbjct: 61  IQESSTIDCHVKSLKKTYHAIAEMRGPSCSGFGWNEEFQCIIAERDLFDSWIKSHPAAKG 120

Query: 121 --------------------------------------------------------FYTN 180
                                                                    Y+ 
Sbjct: 121 LLHKSFPYYDDLSYVFGKDRATGARSETFPNVGSNVSNMFNDTIPLGDSHDEDIPTMYSQ 180

Query: 181 HFHIMTICRMCSVEVGQQEHVRRPLLTWDLMCQTV---------LMTVDKVKDEIVQVGV 240
             H M+   M  +  GQ    R         C +V           TV+ ++  +++ G 
Sbjct: 181 GVH-MSPDEMFGIRAGQASERRN--------CSSVSKRKRGSERYETVEVIR-SVMEFGN 240

Query: 241 RGNGAIADWPKEKRATEVELHAEVVKQLDDIPELRSRDRVKLMRILFRSVDDTQRFLSVP 243
               AIADWPKEKRA EVE+ A+VVKQL DIP+LRS+DR KLM+ILFRS++  + FLS+P
Sbjct: 241 EQLKAIADWPKEKRAMEVEMRAQVVKQLQDIPKLRSQDRAKLMQILFRSLEAIEGFLSIP 300

BLAST of PI0002563 vs. NCBI nr
Match: KAA0031678.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYK04432.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 222.6 bits (566), Expect = 4.7e-54
Identity = 130/263 (49.43%), Postives = 158/263 (60.08%), Query Frame = 0

Query: 1   MASSSRAPKHTWTKEEEAKLVECLVELVSSGRWRSDNGTFRPGYLAQLQQMMAKKLPDTN 60
           MASSSRA KH WTKEEEAKLVECLVELVS+G WRSDNGTFR GYL QLQ+MMA+KLPDTN
Sbjct: 1   MASSSRATKHAWTKEEEAKLVECLVELVSAGGWRSDNGTFRHGYLTQLQRMMAEKLPDTN 60

Query: 61  IQGSPTIDCRVKSLKKA--------YQAIAEMRGS-----------SCNGFGWNEEYQCI 120
           IQGSPTIDCR     K         Y  ++ + G+           +  G   +  +   
Sbjct: 61  IQGSPTIDCRSHPAAKGLLHKSFPYYDDLSYVFGNDGATGAHSETFADGGSNVSNMFNDG 120

Query: 121 IAERDLFNSWVKDFYTNHFHIMTICRMCSVEVGQQEHVRRPLLTWDLMCQTVLMTVDKVK 180
           +   D  N  +   Y+   H M++  +  +  GQ    R           +    + +V 
Sbjct: 121 VPLGDSHNQDILTIYSQGVH-MSLDEIFGIRAGQASERRNYSSGSKRKRGSKHYEMVEVI 180

Query: 181 DEIVQVGVRGNGAIADWPKEKRATEVELHAEVVKQLDDIPELRSRDRVKLMRILFRSVDD 240
               + G      I DWPKEKRATEVEL  EVVKQL DIP+LRS+DR KLM+ILFRSV+ 
Sbjct: 181 SSATEFGNDQLKTITDWPKEKRATEVELRTEVVKQLQDIPQLRSQDRAKLMQILFRSVEA 240

Query: 241 TQRFLSVPTKLKLEYCSILLEEN 245
            + FLS+PTKLKLEYC+ILLE N
Sbjct: 241 IEGFLSIPTKLKLEYCNILLENN 262

BLAST of PI0002563 vs. NCBI nr
Match: KAA0041444.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYK24318.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 214.2 bits (544), Expect = 1.7e-51
Identity = 117/278 (42.09%), Postives = 161/278 (57.91%), Query Frame = 0

Query: 1   MASSSRAPKHTWTKEEEAKLVECLVELVSSGRWRSDNGTFRPGYLAQLQQMMAKKLPDTN 60
           M SS R PKH+WTKEEEA LVECLVELV++G WR DNGTFRPGYL QL++MM  K+ D N
Sbjct: 55  MTSSLRLPKHSWTKEEEAGLVECLVELVNAGGWRFDNGTFRPGYLNQLERMMTFKILDCN 114

Query: 61  IQGSPTIDCRVKSLKKAYQAIAEMRGSSCNGFGWNEEYQCIIAERDLFNSWVKDF----- 120
           I  SP  D R+K +K+ + A+AEMRG +C+GFGWN+E +CI+AE+++FN W+K F     
Sbjct: 115 IHASPN-DSRIKLMKRMFHALAEMRGPTCSGFGWNDEQKCIVAEKEVFNDWIKSFADVGS 174

Query: 121 ----------------------YTNHFHIMTICRMCSVEVGQQEH------VRRPLLTWD 180
                                 Y    ++ +   M +     +EH       +R      
Sbjct: 175 NDPAGYDAFLADAAPDMDFPPMYNQGLNMSSDDLMGTRTAWVREHRNVSSGSKRKRAGHS 234

Query: 181 LMCQTVLMTVDKVKDEIVQVGVRGNGAIADWPKEKRATEVELHAEVVKQLDDIPELRSRD 240
                ++ T+ + ++E +         IA+WP  +R    E   EVV+QL+ IPEL   D
Sbjct: 235 ADSGDIIRTLIEYENEQL-------NHIAEWPALQRQDASETRQEVVRQLEAIPELTLMD 294

Query: 241 RVKLMRILFRSVDDTQRFLSVPTKLKLEYCSILLEENE 246
           R +LMRIL R+VDD + FL VP  +K  YCSI+L+EN+
Sbjct: 295 RCRLMRILMRNVDDMKAFLDVPNNMKYPYCSIILQENQ 324

BLAST of PI0002563 vs. NCBI nr
Match: KAA0047509.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 211.1 bits (536), Expect = 1.4e-50
Identity = 121/280 (43.21%), Postives = 160/280 (57.14%), Query Frame = 0

Query: 1   MASSSRAPKHTWTKEEEAKLVECLVELVSSGRWRSDNGTFRPGYLAQLQQMMAKKLPDTN 60
           M SSSR PKHTWTKEEE  LVECLVELV++G WRSDNGTFRPGYL QL +MMA K+P  N
Sbjct: 1   MTSSSRLPKHTWTKEEEVGLVECLVELVNAGGWRSDNGTFRPGYLNQLARMMAFKIPGCN 60

Query: 61  IQGSPTIDCRVKSLKKAYQAIAEMRGSSCNGFGWNEEYQCIIAERDLFNSW----VKDFY 120
           I  S TID R+K +K+ + A+AEMRG +C+GFGWN+E +CIIAE+++F+ W     K   
Sbjct: 61  IHAS-TIDSRIKLMKRMFHALAEMRGPNCSGFGWNDEKKCIIAEKEVFDDWSHPAAKGLL 120

Query: 121 TNHF-HIMTICRMCS------------VEVGQQEHVRRPLLTWDLMCQT----------- 180
              F H   +  +               ++G  +         D +  T           
Sbjct: 121 NKSFVHYDELSYVFGKDPATGGRAESFTDIGSNDPAGYDAFAADAVPDTDFPPMYSPGLN 180

Query: 181 ----VLMTVDKVKDEIVQVGVR-GN---GAIADWPKEKRATEVELHAEVVKQLDDIPELR 240
                LM     + +IV+  V  GN     IA+WP  +R    +   E+V+QL+ IPEL 
Sbjct: 181 MSPDDLMETRTARWDIVRTAVEYGNEQLHRIAEWPILQRQDATQTRQEIVRQLEAIPELT 240

Query: 241 SRDRVKLMRILFRSVDDTQRFLSVPTKLKLEYCSILLEEN 245
             DR +LMRI+ R+VDD + FL VP  +   YCSI+L+EN
Sbjct: 241 LMDRCRLMRIIMRNVDDMKAFLEVPDNMNYPYCSIILQEN 279

BLAST of PI0002563 vs. NCBI nr
Match: KAA0035621.1 (retrotransposon protein [Cucumis melo var. makuwa] >KAA0041647.1 retrotransposon protein [Cucumis melo var. makuwa] >KAA0046728.1 retrotransposon protein [Cucumis melo var. makuwa] >KAA0052099.1 retrotransposon protein [Cucumis melo var. makuwa] >KAA0054495.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 205.3 bits (521), Expect = 7.7e-49
Identity = 122/303 (40.26%), Postives = 168/303 (55.45%), Query Frame = 0

Query: 1   MASSSRAPKHTWTKEEEAKLVECLVELVSSGRWRSDNGTFRPGYLAQLQQMMAKKLPDTN 60
           M SSSR PKHTWTKEEEA LVECLVELV++G WRSDNGTFRPGYL QL +MMA K+P +N
Sbjct: 1   MTSSSRLPKHTWTKEEEAGLVECLVELVNAGGWRSDNGTFRPGYLNQLARMMAFKIPGSN 60

Query: 61  IQGSPTIDCRVKSLKKAYQAIAEMRGSSCNGFGWNEEYQCIIAERDLFNSWV-------- 120
           I  S TID R+K +K+ + A+AEMRG +C+GFGWN+E +CI+AE+++F+ W         
Sbjct: 61  IHAS-TIDSRIKLMKRMFHALAEMRGPNCSGFGWNDEKKCIVAEKEVFDDWSHPAAKGLL 120

Query: 121 -KDF--YTNHFHIMTICRMCS------VEVGQQEHVRRPLLTWDLMCQT---------VL 180
            K F  Y    ++    R          ++G  +      +  D M  T         + 
Sbjct: 121 NKSFVHYDELSYVFGKDRATGGRAESFADIGSNDPPGYDAVAADAMPDTDFPPMYSPGLN 180

Query: 181 MTVDKVKD----------------------------EIVQVGVR-GN---GAIADWPKEK 240
           M+ D + +                            +IV+  +  GN     IA+WP  +
Sbjct: 181 MSPDDLMETRTARVSERRNVSSGSKRKRPGHATDSGDIVRTAIEYGNEQLHRIAEWPILQ 240

Query: 241 RATEVELHAEVVKQLDDIPELRSRDRVKLMRILFRSVDDTQRFLSVPTKLKLEYCSILLE 246
           R    +   E+V+ L+ IPEL   DR +LMRIL R+VDD + FL VP  +K  YCS++L+
Sbjct: 241 RQDATQTRQEIVRHLEAIPELTLMDRCRLMRILMRNVDDMKAFLEVPDHMKYPYCSLILQ 300

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5A7U0H71.7e-7050.16Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A1S3B4L31.7e-7050.16uncharacterized protein LOC103485953 OS=Cucumis melo OX=3656 GN=LOC103485953 PE=... [more]
A0A5D3BZU32.3e-5449.43Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5A7TDD68.0e-5242.09Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5A7U2166.8e-5143.21Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
Match NameE-valueIdentityDescription
XP_008441954.13.6e-7050.16PREDICTED: uncharacterized protein LOC103485953 [Cucumis melo] >KAA0047736.1 ret... [more]
KAA0031678.14.7e-5449.43retrotransposon protein [Cucumis melo var. makuwa] >TYK04432.1 retrotransposon p... [more]
KAA0041444.11.7e-5142.09retrotransposon protein [Cucumis melo var. makuwa] >TYK24318.1 retrotransposon p... [more]
KAA0047509.11.4e-5043.21retrotransposon protein [Cucumis melo var. makuwa][more]
KAA0035621.17.7e-4940.26retrotransposon protein [Cucumis melo var. makuwa] >KAA0041647.1 retrotransposon... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR024752Myb/SANT-like domainPFAMPF12776Myb_DNA-bind_3coord: 11..107
e-value: 8.8E-7
score: 29.8
NoneNo IPR availablePANTHERPTHR46250:SF3MYB/SANT-LIKE DNA-BINDING DOMAIN PROTEINcoord: 3..114
NoneNo IPR availablePANTHERPTHR46250MYB/SANT-LIKE DNA-BINDING DOMAIN PROTEIN-RELATEDcoord: 3..114

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
PI0002563.1PI0002563.1mRNA