Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGCCAAGTTAGAGAAAAAACTCTTAGAGAGCTTTCTGAACCTAATGAAGACCAAAGGCCCCTATGTATAGTAATTCCCCCAACAACTCAACCCTTCGAGCTTAAACCTAGACTAATCCACCTCTTACCAATTTATAAAGGTAGCTCAGGTGAAAACCCTCATAAACACCTTAAGGATTTCCATATGTTTTGTGACTCTATAAGACCCCACGGAGTTTTTGAAGAACAACTTAATCTTAGAGCCTTTCCATTCTCCTTAACCGATACGGCCAAACGATGGCTTTATTACTTAGAACCAGGGTCTATCACAACTTGGGGAGGACTTAAAAAGAAATTCCTAGAAAAATTCTTTCCCGCTTCTAGAGCAAATAACATTAGGAAGGAAATCTATGGAATTAGGCAAGCCCTTGGGGAGTCTTTATCAGAATATTGGGAACGTTTCAAAGAGCTTTGCGCTAGCTTTCCCCACCATCATATTTCTGACCCCTCTTTAATACAGTATTTTTATTCTGGACTACTAACCACGGATAGAAATACAGTAGATGCTGCAGCAGGTGGTGCCTTAGCTGATAAAACCCCTACTGAAGCAAGAGAGCTAATTTCACGGATGGCTGAGAACTCTCAGAACTTTGGCAACAGAGCATCCGAGCTCGACAATTCCTTAACAAAAGAGGTTAGTGAACTTAAATCACAAATGTTGAATATGACTACACTGCTCACTTCTTTTGTACAAGGTGGAAATATGAAAGTTGCAAAATGTGGAGTTTGCGGTCTCATTAGACATCCTAATGACAAGTGTCCCGACCTTGTGGAAGAGGCAAATGTCATTAGGAAGTACGATCCTCATGGAAACACTTATAATGCCGGTTGGAGAGACAACCCTAACCTTAGATGGGGAAATGACGCCCAACGATCCGCACAAGCAACTTCATCCTCGAACAATCAAGGTAGTAATTTGGAAGATTTGGTAAAAGCTCTTGCTACCAACACAATTTCTTTCCAAAATGAAATGAAGCAACAAATGTCCCAATTGACCAATGCAATAAGCAAACTAGAAGGTAAAGGCAAGCTTCCAGCTCAGCCCGATCACGCAAATGTAAGTGCCATCTCGCTTAGAAGCGGTACAATTCTGCAAACCCCTCTAAGCAATGAAAAGGTACCTTCTAACCTACCCTTCTAG
mRNA sequence
ATGGGCCAAGTTAGAGAAAAAACTCTTAGAGAGCTTTCTGAACCTAATGAAGACCAAAGGCCCCTATGTATAGTAATTCCCCCAACAACTCAACCCTTCGAGCTTAAACCTAGACTAATCCACCTCTTACCAATTTATAAAGGTAGCTCAGGTGAAAACCCTCATAAACACCTTAAGGATTTCCATATGTTTTGTGACTCTATAAGACCCCACGGAGTTTTTGAAGAACAACTTAATCTTAGAGCCTTTCCATTCTCCTTAACCGATACGGCCAAACGATGGCTTTATTACTTAGAACCAGGGTCTATCACAACTTGGGGAGGACTTAAAAAGAAATTCCTAGAAAAATTCTTTCCCGCTTCTAGAGCAAATAACATTAGGAAGGAAATCTATGGAATTAGGCAAGCCCTTGGGGAGTCTTTATCAGAATATTGGGAACGTTTCAAAGAGCTTTGCGCTAGCTTTCCCCACCATCATATTTCTGACCCCTCTTTAATACAGTATTTTTATTCTGGACTACTAACCACGGATAGAAATACAGTAGATGCTGCAGCAGGTGGTGCCTTAGCTGATAAAACCCCTACTGAAGCAAGAGAGCTAATTTCACGGATGGCTGAGAACTCTCAGAACTTTGGCAACAGAGCATCCGAGCTCGACAATTCCTTAACAAAAGAGGTTAGTGAACTTAAATCACAAATGTTGAATATGACTACACTGCTCACTTCTTTTGTACAAGGTGGAAATATGAAAGTTGCAAAATGTGGAGTTTGCGGTCTCATTAGACATCCTAATGACAAGTGTCCCGACCTTGTGGAAGAGGCAAATGTCATTAGGAAGTACGATCCTCATGGAAACACTTATAATGCCGGTTGGAGAGACAACCCTAACCTTAGATGGGGAAATGACGCCCAACGATCCGCACAAGCAACTTCATCCTCGAACAATCAAGGTAGTAATTTGGAAGATTTGGTAAAAGCTCTTGCTACCAACACAATTTCTTTCCAAAATGAAATGAAGCAACAAATGTCCCAATTGACCAATGCAATAAGCAAACTAGAAGGTAAAGGCAAGCTTCCAGCTCAGCCCGATCACGCAAATGTAAGTGCCATCTCGCTTAGAAGCGGTACAATTCTGCAAACCCCTCTAAGCAATGAAAAGGTACCTTCTAACCTACCCTTCTAG
Coding sequence (CDS)
ATGGGCCAAGTTAGAGAAAAAACTCTTAGAGAGCTTTCTGAACCTAATGAAGACCAAAGGCCCCTATGTATAGTAATTCCCCCAACAACTCAACCCTTCGAGCTTAAACCTAGACTAATCCACCTCTTACCAATTTATAAAGGTAGCTCAGGTGAAAACCCTCATAAACACCTTAAGGATTTCCATATGTTTTGTGACTCTATAAGACCCCACGGAGTTTTTGAAGAACAACTTAATCTTAGAGCCTTTCCATTCTCCTTAACCGATACGGCCAAACGATGGCTTTATTACTTAGAACCAGGGTCTATCACAACTTGGGGAGGACTTAAAAAGAAATTCCTAGAAAAATTCTTTCCCGCTTCTAGAGCAAATAACATTAGGAAGGAAATCTATGGAATTAGGCAAGCCCTTGGGGAGTCTTTATCAGAATATTGGGAACGTTTCAAAGAGCTTTGCGCTAGCTTTCCCCACCATCATATTTCTGACCCCTCTTTAATACAGTATTTTTATTCTGGACTACTAACCACGGATAGAAATACAGTAGATGCTGCAGCAGGTGGTGCCTTAGCTGATAAAACCCCTACTGAAGCAAGAGAGCTAATTTCACGGATGGCTGAGAACTCTCAGAACTTTGGCAACAGAGCATCCGAGCTCGACAATTCCTTAACAAAAGAGGTTAGTGAACTTAAATCACAAATGTTGAATATGACTACACTGCTCACTTCTTTTGTACAAGGTGGAAATATGAAAGTTGCAAAATGTGGAGTTTGCGGTCTCATTAGACATCCTAATGACAAGTGTCCCGACCTTGTGGAAGAGGCAAATGTCATTAGGAAGTACGATCCTCATGGAAACACTTATAATGCCGGTTGGAGAGACAACCCTAACCTTAGATGGGGAAATGACGCCCAACGATCCGCACAAGCAACTTCATCCTCGAACAATCAAGGTAGTAATTTGGAAGATTTGGTAAAAGCTCTTGCTACCAACACAATTTCTTTCCAAAATGAAATGAAGCAACAAATGTCCCAATTGACCAATGCAATAAGCAAACTAGAAGGTAAAGGCAAGCTTCCAGCTCAGCCCGATCACGCAAATGTAAGTGCCATCTCGCTTAGAAGCGGTACAATTCTGCAAACCCCTCTAAGCAATGAAAAGGTACCTTCTAACCTACCCTTCTAG
Protein sequence
MGQVREKTLRELSEPNEDQRPLCIVIPPTTQPFELKPRLIHLLPIYKGSSGENPHKHLKDFHMFCDSIRPHGVFEEQLNLRAFPFSLTDTAKRWLYYLEPGSITTWGGLKKKFLEKFFPASRANNIRKEIYGIRQALGESLSEYWERFKELCASFPHHHISDPSLIQYFYSGLLTTDRNTVDAAAGGALADKTPTEARELISRMAENSQNFGNRASELDNSLTKEVSELKSQMLNMTTLLTSFVQGGNMKVAKCGVCGLIRHPNDKCPDLVEEANVIRKYDPHGNTYNAGWRDNPNLRWGNDAQRSAQATSSSNNQGSNLEDLVKALATNTISFQNEMKQQMSQLTNAISKLEGKGKLPAQPDHANVSAISLRSGTILQTPLSNEKVPSNLPF
Homology
BLAST of PI0001942 vs. ExPASy TrEMBL
Match:
A0A5A7SRF5 (Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold96G00500 PE=4 SV=1)
HSP 1 Score: 643.7 bits (1659), Expect = 5.1e-181
Identity = 309/392 (78.83%), Postives = 352/392 (89.80%), Query Frame = 0
Query: 1 MGQVREKTLRELSEPNEDQRPLCIVIPPTTQPFELKPRLIHLLPIYKGSSGENPHKHLKD 60
MG+VREKT+R+L E +EDQRPLCIVI TTQPFELKPRLIHLLPI+KG+SGE+PHKHLKD
Sbjct: 61 MGEVREKTIRKLDELDEDQRPLCIVISLTTQPFELKPRLIHLLPIFKGNSGEDPHKHLKD 120
Query: 61 FHMFCDSIRPHGVFEEQLNLRAFPFSLTDTAKRWLYYLEPGSITTWGGLKKKFLEKFFPA 120
FHM CDS+RPHG+ EEQLNLRAFPFSLTD AKRWLYYLEPGSITTWG LKKKFLEKFFPA
Sbjct: 121 FHMVCDSMRPHGISEEQLNLRAFPFSLTDVAKRWLYYLEPGSITTWGSLKKKFLEKFFPA 180
Query: 121 SRANNIRKEIYGIRQALGESLSEYWERFKELCASFPHHHISDPSLIQYFYSGLLTTDRNT 180
SR NNIRKEIYGIRQA GESL +YWE+FKELCA+FPHHHI PSLIQYFY GLL++DRNT
Sbjct: 181 SRTNNIRKEIYGIRQAFGESLLKYWEKFKELCANFPHHHIFYPSLIQYFYFGLLSSDRNT 240
Query: 181 VDAAAGGALADKTPTEARELISRMAENSQNFGNRASELDNSLTKEVSELKSQMLNMTTLL 240
VDAAAGGALA+K PTEARELISRMA+NSQ FGNRASEL+NSLTKEVSELKSQMLNMTTLL
Sbjct: 241 VDAAAGGALANKIPTEARELISRMAKNSQRFGNRASELENSLTKEVSELKSQMLNMTTLL 300
Query: 241 TSFVQGGNMKVAKCGVCGLIRHPNDKCPDLVEEANVIRKYDPHGNTYNAGWRDNPNLRWG 300
TSFVQG +KV KC VCGL+ HPNDKCP+++EE N+++KYDP+ NTYN GWRDNP LRWG
Sbjct: 301 TSFVQGTPLKVTKCRVCGLVGHPNDKCPEVIEELNIVKKYDPYSNTYNTGWRDNPILRWG 360
Query: 301 NDAQRSAQATSSSNNQGSNLEDLVKALATNTISFQNEMKQQMSQLTNAISKLEGKGKLPA 360
ND Q+ QA ++S+NQ +NL+D++KALATNT+SFQ EMKQQM+QLT ISK++GKGKLPA
Sbjct: 361 NDNQKHTQAPTTSSNQSTNLKDIIKALATNTLSFQQEMKQQMTQLTTTISKMDGKGKLPA 420
Query: 361 QPDHANVSAISLRSGTILQTPLSNEKVPSNLP 393
QP+HANVS ISLRSG IL TP + EK +++P
Sbjct: 421 QPNHANVSVISLRSGKILDTPSTKEKKVTSIP 452
BLAST of PI0001942 vs. ExPASy TrEMBL
Match:
A0A5A7USL5 (Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold274G004630 PE=4 SV=1)
HSP 1 Score: 576.6 bits (1485), Expect = 7.7e-161
Identity = 290/394 (73.60%), Postives = 320/394 (81.22%), Query Frame = 0
Query: 1 MGQVREKTLRELSEPNEDQRPLCIVIPPTTQPFELKPRLIHLLPIYKGSSGENPHKHLKD 60
MG+VREK LREL+EPNED RPLCIVIPPTTQPFELKP LIHLLPI+KGSSGE+PHKHLKD
Sbjct: 1 MGEVREKILRELAEPNEDHRPLCIVIPPTTQPFELKPGLIHLLPIFKGSSGEDPHKHLKD 60
Query: 61 FHMFCDSIRPHGVFEEQLNLRAFPFSLTDTAKRWLYYLEPGSITTWGGLKKKFLEKFFPA 120
FHM CDS+RP+ + EEQLNLRAFPF LTD AK WLYYLEPGSITTWG LKKKFLEKFFPA
Sbjct: 61 FHMVCDSMRPYSISEEQLNLRAFPFFLTDVAKIWLYYLEPGSITTWGSLKKKFLEKFFPA 120
Query: 121 SRANNIRKEIYGIRQALGESLSEYWERFKELCASFPHHHISDPSLIQYFYSGLLTTDRNT 180
SRANNIRKEIYGIRQA GESLS+YWERFKELCAS PH+HI DPSLIQYFYSGLL+ DRNT
Sbjct: 121 SRANNIRKEIYGIRQAFGESLSKYWERFKELCASLPHYHIFDPSLIQYFYSGLLSFDRNT 180
Query: 181 VDAAAGGALADKTPTEARELISRMAENSQNFGNRASELDNSLTKEVSELKSQMLNMTTLL 240
VDAA GGALADKTPTEAR+LISRM ENSQ+FGNRASELDNSLTKEVSELKSQMLNMTTLL
Sbjct: 181 VDAATGGALADKTPTEARKLISRMMENSQSFGNRASELDNSLTKEVSELKSQMLNMTTLL 240
Query: 241 TSFVQGGNMKVAKCGVCGLIRHPNDKCPDLVEEANVIRKYDPHGNTYNAGWRDNPNLRWG 300
TSFVQG +KV KCGVCGL+ HPNDKCP+++E+ N++R+YDPH
Sbjct: 241 TSFVQGTPLKVTKCGVCGLVGHPNDKCPEVIEDVNIVRRYDPH----------------- 300
Query: 301 NDAQRSAQATSSSNNQGSNLEDLVKALATNTISFQNEMKQQMSQLTNAISKLEGKGKLPA 360
G+NLED++KALATNT+SFQ EMKQQM+QLT AISK++GKGKLPA
Sbjct: 301 ----------------GTNLEDIIKALATNTLSFQQEMKQQMTQLTTAISKMDGKGKLPA 353
Query: 361 QPDHANVSAISLRSGTILQTP----LSNEKVPSN 391
QPDHAN + QTP L N+K P N
Sbjct: 361 QPDHAN--------KRLKQTPHHLILKNDKSPLN 353
BLAST of PI0001942 vs. ExPASy TrEMBL
Match:
A0A5A7V0Q7 (Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold753G00020 PE=4 SV=1)
HSP 1 Score: 540.4 bits (1391), Expect = 6.1e-150
Identity = 260/319 (81.50%), Postives = 290/319 (90.91%), Query Frame = 0
Query: 68 IRPHGVFEEQLNLRAFPFSLTDTAKRWLYYLEPGSITTWGGLKKKFLEKFFPASRANNIR 127
+RPHG+ +EQLNLRAFPFSLTD AKRWLYY+EPGSITTWG LKKKFLEKFFPASRANNIR
Sbjct: 1 MRPHGISKEQLNLRAFPFSLTDVAKRWLYYVEPGSITTWGSLKKKFLEKFFPASRANNIR 60
Query: 128 KEIYGIRQALGESLSEYWERFKELCASFPHHHISDPSLIQYFYSGLLTTDRNTVDAAAGG 187
KEIYGIRQA GESLS+YW+R KELCASFPHHHISDPSLIQYF+SGLL+ DRNT+D AGG
Sbjct: 61 KEIYGIRQAFGESLSKYWKRSKELCASFPHHHISDPSLIQYFHSGLLSFDRNTIDVVAGG 120
Query: 188 ALADKTPTEARELISRMAENSQNFGNRASELDNSLTKEVSELKSQMLNMTTLLTSFVQGG 247
ALADKTPTEARELISRM ENSQ+FGNRASELDNSLTKEVSELKSQMLNMTTLLTSFVQG
Sbjct: 121 ALADKTPTEARELISRMVENSQSFGNRASELDNSLTKEVSELKSQMLNMTTLLTSFVQGT 180
Query: 248 NMKVAKCGVCGLIRHPNDKCPDLVEEANVIRKYDPHGNTYNAGWRDNPNLRWGNDAQRSA 307
KV KCGVCGL+ HPNDKC ++E+ N++R+YDPH NTYN+GWRDNPNLRWGND Q+
Sbjct: 181 PPKVTKCGVCGLVGHPNDKCLKVIEDVNIVRRYDPHSNTYNSGWRDNPNLRWGNDNQKHT 240
Query: 308 QATSSSNNQGSNLEDLVKALATNTISFQNEMKQQMSQLTNAISKLEGKGKLPAQPDHANV 367
QA S+S+NQG+NLED++KAL TNT+SFQ EMKQQM+QLT AISK++GKGKLPAQPD+ANV
Sbjct: 241 QAPSTSSNQGTNLEDIIKALGTNTLSFQQEMKQQMTQLTTAISKMDGKGKLPAQPDYANV 300
Query: 368 SAISLRSGTILQTPLSNEK 387
SAISLRSG IL TP + EK
Sbjct: 301 SAISLRSGKILDTPTTKEK 319
BLAST of PI0001942 vs. ExPASy TrEMBL
Match:
A0A5A7ULC7 (Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold29G00020 PE=4 SV=1)
HSP 1 Score: 538.5 bits (1386), Expect = 2.3e-149
Identity = 274/381 (71.92%), Postives = 306/381 (80.31%), Query Frame = 0
Query: 1 MGQVREKTLRELSEPNEDQRPLCIVIPPTTQPFELKPRLIHLLPIYKGSSGENPHKHLKD 60
MG+VREKTL+EL +P+EDQRPLCIVIPPTTQPFELK LIHLLPI+KG
Sbjct: 1 MGKVREKTLKELVDPDEDQRPLCIVIPPTTQPFELKQGLIHLLPIFKGK----------- 60
Query: 61 FHMFCDSIRPHGVFEEQLNLRAFPFSLTDTAKRWLYYLEPGSITTWGGLKKKFLEKFFPA 120
KRWLYYLEPGSITTWG LKKKFLEKFFPA
Sbjct: 61 -------------------------------KRWLYYLEPGSITTWGSLKKKFLEKFFPA 120
Query: 121 SRANNIRKEIYGIRQALGESLSEYWERFKELCASFPHHHISDPSLIQYFYSGLLTTDRNT 180
S+ANNIRKEIYGIRQA GESLS YWERFKELCASFP HIS+PSLIQYFYSGLL++D+NT
Sbjct: 121 SKANNIRKEIYGIRQAFGESLSRYWERFKELCASFPFLHISNPSLIQYFYSGLLSSDKNT 180
Query: 181 VDAAAGGALADKTPTEARELISRMAENSQNFGNRASELDNSLTKEVSELKSQMLNMTTLL 240
VDAAAGGALADKTP EA+ELISRMAENSQ+FGNRASEL NSLTKEVSE+KSQMLNMTTLL
Sbjct: 181 VDAAAGGALADKTPIEAQELISRMAENSQSFGNRASELVNSLTKEVSEIKSQMLNMTTLL 240
Query: 241 TSFVQGGNMKVAKCGVCGLIRHPNDKCPDLVEEANVIRKYDPHGNTYNAGWRDNPNLRWG 300
TSFVQG +KV KCGV G + HPNDKCP+++E+ N+++KYDPHGNTYN+GWRDNPNLRWG
Sbjct: 241 TSFVQGTPIKVTKCGVFGFVGHPNDKCPEVIEDVNIVQKYDPHGNTYNSGWRDNPNLRWG 300
Query: 301 NDAQRSAQATSSSNNQGSNLEDLVKALATNTISFQNEMKQQMSQLTNAISKLEGKGKLPA 360
ND Q QA +S+NQG+NLE ++KALATNT SFQ EMKQQ++QLT AISK++GKGKL A
Sbjct: 301 NDNQTHTQAPPTSSNQGTNLEVIIKALATNTFSFQQEMKQQITQLTTAISKMDGKGKLLA 339
Query: 361 QPDHANVSAISLRSGTILQTP 382
QPDHANVSAISLRS I Q P
Sbjct: 361 QPDHANVSAISLRSDAIQQVP 339
BLAST of PI0001942 vs. ExPASy TrEMBL
Match:
A0A5D3CFE7 (Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold315G00840 PE=4 SV=1)
HSP 1 Score: 535.0 bits (1377), Expect = 2.6e-148
Identity = 273/386 (70.73%), Postives = 302/386 (78.24%), Query Frame = 0
Query: 1 MGQVREKTLRELSEPNEDQRPLCIVIPPTTQPFELKPRLIHLLPIYKGSSGENPHKHLKD 60
MG+VREKTLREL+EP+EDQRPLCIVIPPTTQPFELK LIHLLPI+KG
Sbjct: 1 MGEVREKTLRELAEPDEDQRPLCIVIPPTTQPFELKSGLIHLLPIFKG------------ 60
Query: 61 FHMFCDSIRPHGVFEEQLNLRAFPFSLTDTAKRWLYYLEPGSITTWGGLKKKFLEKFFPA 120
+P SITTWG LKKKFLEKFF A
Sbjct: 61 --------------------------------------KPSSITTWGSLKKKFLEKFFLA 120
Query: 121 SRANNIRKEIYGIRQALGESLSEYWERFKELCASFPHHHISDPSLIQYFYSGLLTTDRNT 180
SRANNIRKEIYGIRQA ESLSEYWERFKELCASFPHHHI DPSL QYFYSGLL++DRNT
Sbjct: 121 SRANNIRKEIYGIRQAFEESLSEYWERFKELCASFPHHHIFDPSLFQYFYSGLLSSDRNT 180
Query: 181 VDAAAGGALADKTPTEARELISRMAENSQNFGNRASELDNSLTKEVSELKSQMLNMTTLL 240
VDA AG ALADKTPTEA ELISRMAEN Q+FGNRAS+L+N LTKEVSELKS+MLNMTTLL
Sbjct: 181 VDAVAGRALADKTPTEAWELISRMAENFQSFGNRASKLENYLTKEVSELKSKMLNMTTLL 240
Query: 241 TSFVQGGNMKVAKCGVCGLIRHPNDKCPDLVEEANVIRKYDPHGNTYNAGWRDNPNLRWG 300
TSFVQG KV KCGVCGL+ HPNDKCP+++E+ N++R+YDPHGNTYN GWRD PNLRWG
Sbjct: 241 TSFVQGTPFKVTKCGVCGLVGHPNDKCPEVIEDINIVRRYDPHGNTYNLGWRDKPNLRWG 300
Query: 301 NDAQRSAQATSSSNNQGSNLEDLVKALATNTISFQNEMKQQMSQLTNAISKLEGKGKLPA 360
ND Q QA S+S+NQG+NLED++KAL TNT+SFQ EMKQQM+QLT AISK++GKGKLPA
Sbjct: 301 NDKQNHTQAPSTSSNQGTNLEDIIKALTTNTLSFQQEMKQQMTQLTTAISKMDGKGKLPA 336
Query: 361 QPDHANVSAISLRSGTILQTPLSNEK 387
QPDHANVSAISLRSG IL TP + EK
Sbjct: 361 QPDHANVSAISLRSGKILDTPTTKEK 336
BLAST of PI0001942 vs. NCBI nr
Match:
KAA0031967.1 (retrotransposon gag protein [Cucumis melo var. makuwa] >TYK16787.1 retrotransposon gag protein [Cucumis melo var. makuwa])
HSP 1 Score: 643.7 bits (1659), Expect = 1.1e-180
Identity = 309/392 (78.83%), Postives = 352/392 (89.80%), Query Frame = 0
Query: 1 MGQVREKTLRELSEPNEDQRPLCIVIPPTTQPFELKPRLIHLLPIYKGSSGENPHKHLKD 60
MG+VREKT+R+L E +EDQRPLCIVI TTQPFELKPRLIHLLPI+KG+SGE+PHKHLKD
Sbjct: 61 MGEVREKTIRKLDELDEDQRPLCIVISLTTQPFELKPRLIHLLPIFKGNSGEDPHKHLKD 120
Query: 61 FHMFCDSIRPHGVFEEQLNLRAFPFSLTDTAKRWLYYLEPGSITTWGGLKKKFLEKFFPA 120
FHM CDS+RPHG+ EEQLNLRAFPFSLTD AKRWLYYLEPGSITTWG LKKKFLEKFFPA
Sbjct: 121 FHMVCDSMRPHGISEEQLNLRAFPFSLTDVAKRWLYYLEPGSITTWGSLKKKFLEKFFPA 180
Query: 121 SRANNIRKEIYGIRQALGESLSEYWERFKELCASFPHHHISDPSLIQYFYSGLLTTDRNT 180
SR NNIRKEIYGIRQA GESL +YWE+FKELCA+FPHHHI PSLIQYFY GLL++DRNT
Sbjct: 181 SRTNNIRKEIYGIRQAFGESLLKYWEKFKELCANFPHHHIFYPSLIQYFYFGLLSSDRNT 240
Query: 181 VDAAAGGALADKTPTEARELISRMAENSQNFGNRASELDNSLTKEVSELKSQMLNMTTLL 240
VDAAAGGALA+K PTEARELISRMA+NSQ FGNRASEL+NSLTKEVSELKSQMLNMTTLL
Sbjct: 241 VDAAAGGALANKIPTEARELISRMAKNSQRFGNRASELENSLTKEVSELKSQMLNMTTLL 300
Query: 241 TSFVQGGNMKVAKCGVCGLIRHPNDKCPDLVEEANVIRKYDPHGNTYNAGWRDNPNLRWG 300
TSFVQG +KV KC VCGL+ HPNDKCP+++EE N+++KYDP+ NTYN GWRDNP LRWG
Sbjct: 301 TSFVQGTPLKVTKCRVCGLVGHPNDKCPEVIEELNIVKKYDPYSNTYNTGWRDNPILRWG 360
Query: 301 NDAQRSAQATSSSNNQGSNLEDLVKALATNTISFQNEMKQQMSQLTNAISKLEGKGKLPA 360
ND Q+ QA ++S+NQ +NL+D++KALATNT+SFQ EMKQQM+QLT ISK++GKGKLPA
Sbjct: 361 NDNQKHTQAPTTSSNQSTNLKDIIKALATNTLSFQQEMKQQMTQLTTTISKMDGKGKLPA 420
Query: 361 QPDHANVSAISLRSGTILQTPLSNEKVPSNLP 393
QP+HANVS ISLRSG IL TP + EK +++P
Sbjct: 421 QPNHANVSVISLRSGKILDTPSTKEKKVTSIP 452
BLAST of PI0001942 vs. NCBI nr
Match:
KAA0058150.1 (uncharacterized protein E6C27_scaffold274G004630 [Cucumis melo var. makuwa])
HSP 1 Score: 576.6 bits (1485), Expect = 1.6e-160
Identity = 290/394 (73.60%), Postives = 320/394 (81.22%), Query Frame = 0
Query: 1 MGQVREKTLRELSEPNEDQRPLCIVIPPTTQPFELKPRLIHLLPIYKGSSGENPHKHLKD 60
MG+VREK LREL+EPNED RPLCIVIPPTTQPFELKP LIHLLPI+KGSSGE+PHKHLKD
Sbjct: 1 MGEVREKILRELAEPNEDHRPLCIVIPPTTQPFELKPGLIHLLPIFKGSSGEDPHKHLKD 60
Query: 61 FHMFCDSIRPHGVFEEQLNLRAFPFSLTDTAKRWLYYLEPGSITTWGGLKKKFLEKFFPA 120
FHM CDS+RP+ + EEQLNLRAFPF LTD AK WLYYLEPGSITTWG LKKKFLEKFFPA
Sbjct: 61 FHMVCDSMRPYSISEEQLNLRAFPFFLTDVAKIWLYYLEPGSITTWGSLKKKFLEKFFPA 120
Query: 121 SRANNIRKEIYGIRQALGESLSEYWERFKELCASFPHHHISDPSLIQYFYSGLLTTDRNT 180
SRANNIRKEIYGIRQA GESLS+YWERFKELCAS PH+HI DPSLIQYFYSGLL+ DRNT
Sbjct: 121 SRANNIRKEIYGIRQAFGESLSKYWERFKELCASLPHYHIFDPSLIQYFYSGLLSFDRNT 180
Query: 181 VDAAAGGALADKTPTEARELISRMAENSQNFGNRASELDNSLTKEVSELKSQMLNMTTLL 240
VDAA GGALADKTPTEAR+LISRM ENSQ+FGNRASELDNSLTKEVSELKSQMLNMTTLL
Sbjct: 181 VDAATGGALADKTPTEARKLISRMMENSQSFGNRASELDNSLTKEVSELKSQMLNMTTLL 240
Query: 241 TSFVQGGNMKVAKCGVCGLIRHPNDKCPDLVEEANVIRKYDPHGNTYNAGWRDNPNLRWG 300
TSFVQG +KV KCGVCGL+ HPNDKCP+++E+ N++R+YDPH
Sbjct: 241 TSFVQGTPLKVTKCGVCGLVGHPNDKCPEVIEDVNIVRRYDPH----------------- 300
Query: 301 NDAQRSAQATSSSNNQGSNLEDLVKALATNTISFQNEMKQQMSQLTNAISKLEGKGKLPA 360
G+NLED++KALATNT+SFQ EMKQQM+QLT AISK++GKGKLPA
Sbjct: 301 ----------------GTNLEDIIKALATNTLSFQQEMKQQMTQLTTAISKMDGKGKLPA 353
Query: 361 QPDHANVSAISLRSGTILQTP----LSNEKVPSN 391
QPDHAN + QTP L N+K P N
Sbjct: 361 QPDHAN--------KRLKQTPHHLILKNDKSPLN 353
BLAST of PI0001942 vs. NCBI nr
Match:
KAA0061138.1 (retrotransposon gag protein [Cucumis melo var. makuwa])
HSP 1 Score: 540.4 bits (1391), Expect = 1.3e-149
Identity = 260/319 (81.50%), Postives = 290/319 (90.91%), Query Frame = 0
Query: 68 IRPHGVFEEQLNLRAFPFSLTDTAKRWLYYLEPGSITTWGGLKKKFLEKFFPASRANNIR 127
+RPHG+ +EQLNLRAFPFSLTD AKRWLYY+EPGSITTWG LKKKFLEKFFPASRANNIR
Sbjct: 1 MRPHGISKEQLNLRAFPFSLTDVAKRWLYYVEPGSITTWGSLKKKFLEKFFPASRANNIR 60
Query: 128 KEIYGIRQALGESLSEYWERFKELCASFPHHHISDPSLIQYFYSGLLTTDRNTVDAAAGG 187
KEIYGIRQA GESLS+YW+R KELCASFPHHHISDPSLIQYF+SGLL+ DRNT+D AGG
Sbjct: 61 KEIYGIRQAFGESLSKYWKRSKELCASFPHHHISDPSLIQYFHSGLLSFDRNTIDVVAGG 120
Query: 188 ALADKTPTEARELISRMAENSQNFGNRASELDNSLTKEVSELKSQMLNMTTLLTSFVQGG 247
ALADKTPTEARELISRM ENSQ+FGNRASELDNSLTKEVSELKSQMLNMTTLLTSFVQG
Sbjct: 121 ALADKTPTEARELISRMVENSQSFGNRASELDNSLTKEVSELKSQMLNMTTLLTSFVQGT 180
Query: 248 NMKVAKCGVCGLIRHPNDKCPDLVEEANVIRKYDPHGNTYNAGWRDNPNLRWGNDAQRSA 307
KV KCGVCGL+ HPNDKC ++E+ N++R+YDPH NTYN+GWRDNPNLRWGND Q+
Sbjct: 181 PPKVTKCGVCGLVGHPNDKCLKVIEDVNIVRRYDPHSNTYNSGWRDNPNLRWGNDNQKHT 240
Query: 308 QATSSSNNQGSNLEDLVKALATNTISFQNEMKQQMSQLTNAISKLEGKGKLPAQPDHANV 367
QA S+S+NQG+NLED++KAL TNT+SFQ EMKQQM+QLT AISK++GKGKLPAQPD+ANV
Sbjct: 241 QAPSTSSNQGTNLEDIIKALGTNTLSFQQEMKQQMTQLTTAISKMDGKGKLPAQPDYANV 300
Query: 368 SAISLRSGTILQTPLSNEK 387
SAISLRSG IL TP + EK
Sbjct: 301 SAISLRSGKILDTPTTKEK 319
BLAST of PI0001942 vs. NCBI nr
Match:
KAA0056713.1 (retrotransposon gag protein [Cucumis melo var. makuwa])
HSP 1 Score: 538.5 bits (1386), Expect = 4.8e-149
Identity = 274/381 (71.92%), Postives = 306/381 (80.31%), Query Frame = 0
Query: 1 MGQVREKTLRELSEPNEDQRPLCIVIPPTTQPFELKPRLIHLLPIYKGSSGENPHKHLKD 60
MG+VREKTL+EL +P+EDQRPLCIVIPPTTQPFELK LIHLLPI+KG
Sbjct: 1 MGKVREKTLKELVDPDEDQRPLCIVIPPTTQPFELKQGLIHLLPIFKGK----------- 60
Query: 61 FHMFCDSIRPHGVFEEQLNLRAFPFSLTDTAKRWLYYLEPGSITTWGGLKKKFLEKFFPA 120
KRWLYYLEPGSITTWG LKKKFLEKFFPA
Sbjct: 61 -------------------------------KRWLYYLEPGSITTWGSLKKKFLEKFFPA 120
Query: 121 SRANNIRKEIYGIRQALGESLSEYWERFKELCASFPHHHISDPSLIQYFYSGLLTTDRNT 180
S+ANNIRKEIYGIRQA GESLS YWERFKELCASFP HIS+PSLIQYFYSGLL++D+NT
Sbjct: 121 SKANNIRKEIYGIRQAFGESLSRYWERFKELCASFPFLHISNPSLIQYFYSGLLSSDKNT 180
Query: 181 VDAAAGGALADKTPTEARELISRMAENSQNFGNRASELDNSLTKEVSELKSQMLNMTTLL 240
VDAAAGGALADKTP EA+ELISRMAENSQ+FGNRASEL NSLTKEVSE+KSQMLNMTTLL
Sbjct: 181 VDAAAGGALADKTPIEAQELISRMAENSQSFGNRASELVNSLTKEVSEIKSQMLNMTTLL 240
Query: 241 TSFVQGGNMKVAKCGVCGLIRHPNDKCPDLVEEANVIRKYDPHGNTYNAGWRDNPNLRWG 300
TSFVQG +KV KCGV G + HPNDKCP+++E+ N+++KYDPHGNTYN+GWRDNPNLRWG
Sbjct: 241 TSFVQGTPIKVTKCGVFGFVGHPNDKCPEVIEDVNIVQKYDPHGNTYNSGWRDNPNLRWG 300
Query: 301 NDAQRSAQATSSSNNQGSNLEDLVKALATNTISFQNEMKQQMSQLTNAISKLEGKGKLPA 360
ND Q QA +S+NQG+NLE ++KALATNT SFQ EMKQQ++QLT AISK++GKGKL A
Sbjct: 301 NDNQTHTQAPPTSSNQGTNLEVIIKALATNTFSFQQEMKQQITQLTTAISKMDGKGKLLA 339
Query: 361 QPDHANVSAISLRSGTILQTP 382
QPDHANVSAISLRS I Q P
Sbjct: 361 QPDHANVSAISLRSDAIQQVP 339
BLAST of PI0001942 vs. NCBI nr
Match:
TYK10613.1 (retrotransposon gag protein [Cucumis melo var. makuwa])
HSP 1 Score: 535.0 bits (1377), Expect = 5.3e-148
Identity = 273/386 (70.73%), Postives = 302/386 (78.24%), Query Frame = 0
Query: 1 MGQVREKTLRELSEPNEDQRPLCIVIPPTTQPFELKPRLIHLLPIYKGSSGENPHKHLKD 60
MG+VREKTLREL+EP+EDQRPLCIVIPPTTQPFELK LIHLLPI+KG
Sbjct: 1 MGEVREKTLRELAEPDEDQRPLCIVIPPTTQPFELKSGLIHLLPIFKG------------ 60
Query: 61 FHMFCDSIRPHGVFEEQLNLRAFPFSLTDTAKRWLYYLEPGSITTWGGLKKKFLEKFFPA 120
+P SITTWG LKKKFLEKFF A
Sbjct: 61 --------------------------------------KPSSITTWGSLKKKFLEKFFLA 120
Query: 121 SRANNIRKEIYGIRQALGESLSEYWERFKELCASFPHHHISDPSLIQYFYSGLLTTDRNT 180
SRANNIRKEIYGIRQA ESLSEYWERFKELCASFPHHHI DPSL QYFYSGLL++DRNT
Sbjct: 121 SRANNIRKEIYGIRQAFEESLSEYWERFKELCASFPHHHIFDPSLFQYFYSGLLSSDRNT 180
Query: 181 VDAAAGGALADKTPTEARELISRMAENSQNFGNRASELDNSLTKEVSELKSQMLNMTTLL 240
VDA AG ALADKTPTEA ELISRMAEN Q+FGNRAS+L+N LTKEVSELKS+MLNMTTLL
Sbjct: 181 VDAVAGRALADKTPTEAWELISRMAENFQSFGNRASKLENYLTKEVSELKSKMLNMTTLL 240
Query: 241 TSFVQGGNMKVAKCGVCGLIRHPNDKCPDLVEEANVIRKYDPHGNTYNAGWRDNPNLRWG 300
TSFVQG KV KCGVCGL+ HPNDKCP+++E+ N++R+YDPHGNTYN GWRD PNLRWG
Sbjct: 241 TSFVQGTPFKVTKCGVCGLVGHPNDKCPEVIEDINIVRRYDPHGNTYNLGWRDKPNLRWG 300
Query: 301 NDAQRSAQATSSSNNQGSNLEDLVKALATNTISFQNEMKQQMSQLTNAISKLEGKGKLPA 360
ND Q QA S+S+NQG+NLED++KAL TNT+SFQ EMKQQM+QLT AISK++GKGKLPA
Sbjct: 301 NDKQNHTQAPSTSSNQGTNLEDIIKALTTNTLSFQQEMKQQMTQLTTAISKMDGKGKLPA 336
Query: 361 QPDHANVSAISLRSGTILQTPLSNEK 387
QPDHANVSAISLRSG IL TP + EK
Sbjct: 361 QPDHANVSAISLRSGKILDTPTTKEK 336
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A5A7SRF5 | 5.1e-181 | 78.83 | Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaf... | [more] |
A0A5A7USL5 | 7.7e-161 | 73.60 | Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 ... | [more] |
A0A5A7V0Q7 | 6.1e-150 | 81.50 | Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaf... | [more] |
A0A5A7ULC7 | 2.3e-149 | 71.92 | Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaf... | [more] |
A0A5D3CFE7 | 2.6e-148 | 70.73 | Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaf... | [more] |
Match Name | E-value | Identity | Description | |
KAA0031967.1 | 1.1e-180 | 78.83 | retrotransposon gag protein [Cucumis melo var. makuwa] >TYK16787.1 retrotranspos... | [more] |
KAA0058150.1 | 1.6e-160 | 73.60 | uncharacterized protein E6C27_scaffold274G004630 [Cucumis melo var. makuwa] | [more] |
KAA0061138.1 | 1.3e-149 | 81.50 | retrotransposon gag protein [Cucumis melo var. makuwa] | [more] |
KAA0056713.1 | 4.8e-149 | 71.92 | retrotransposon gag protein [Cucumis melo var. makuwa] | [more] |
TYK10613.1 | 5.3e-148 | 70.73 | retrotransposon gag protein [Cucumis melo var. makuwa] | [more] |
Match Name | E-value | Identity | Description | |