PI0001942 (gene) Melon (PI 482460) v1

Overview


Name	PI0001942
Type	gene
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	Retrotransposon gag protein
Location	chr08: 10194515 .. 10195696 (-)
RNA-Seq Expression	PI0001942
Synteny	PI0001942

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGCCAAGTTAGAGAAAAAACTCTTAGAGAGCTTTCTGAACCTAATGAAGACCAAAGGCCCCTATGTATAGTAATTCCCCCAACAACTCAACCCTTCGAGCTTAAACCTAGACTAATCCACCTCTTACCAATTTATAAAGGTAGCTCAGGTGAAAACCCTCATAAACACCTTAAGGATTTCCATATGTTTTGTGACTCTATAAGACCCCACGGAGTTTTTGAAGAACAACTTAATCTTAGAGCCTTTCCATTCTCCTTAACCGATACGGCCAAACGATGGCTTTATTACTTAGAACCAGGGTCTATCACAACTTGGGGAGGACTTAAAAAGAAATTCCTAGAAAAATTCTTTCCCGCTTCTAGAGCAAATAACATTAGGAAGGAAATCTATGGAATTAGGCAAGCCCTTGGGGAGTCTTTATCAGAATATTGGGAACGTTTCAAAGAGCTTTGCGCTAGCTTTCCCCACCATCATATTTCTGACCCCTCTTTAATACAGTATTTTTATTCTGGACTACTAACCACGGATAGAAATACAGTAGATGCTGCAGCAGGTGGTGCCTTAGCTGATAAAACCCCTACTGAAGCAAGAGAGCTAATTTCACGGATGGCTGAGAACTCTCAGAACTTTGGCAACAGAGCATCCGAGCTCGACAATTCCTTAACAAAAGAGGTTAGTGAACTTAAATCACAAATGTTGAATATGACTACACTGCTCACTTCTTTTGTACAAGGTGGAAATATGAAAGTTGCAAAATGTGGAGTTTGCGGTCTCATTAGACATCCTAATGACAAGTGTCCCGACCTTGTGGAAGAGGCAAATGTCATTAGGAAGTACGATCCTCATGGAAACACTTATAATGCCGGTTGGAGAGACAACCCTAACCTTAGATGGGGAAATGACGCCCAACGATCCGCACAAGCAACTTCATCCTCGAACAATCAAGGTAGTAATTTGGAAGATTTGGTAAAAGCTCTTGCTACCAACACAATTTCTTTCCAAAATGAAATGAAGCAACAAATGTCCCAATTGACCAATGCAATAAGCAAACTAGAAGGTAAAGGCAAGCTTCCAGCTCAGCCCGATCACGCAAATGTAAGTGCCATCTCGCTTAGAAGCGGTACAATTCTGCAAACCCCTCTAAGCAATGAAAAGGTACCTTCTAACCTACCCTTCTAG

mRNA sequence

ATGGGCCAAGTTAGAGAAAAAACTCTTAGAGAGCTTTCTGAACCTAATGAAGACCAAAGGCCCCTATGTATAGTAATTCCCCCAACAACTCAACCCTTCGAGCTTAAACCTAGACTAATCCACCTCTTACCAATTTATAAAGGTAGCTCAGGTGAAAACCCTCATAAACACCTTAAGGATTTCCATATGTTTTGTGACTCTATAAGACCCCACGGAGTTTTTGAAGAACAACTTAATCTTAGAGCCTTTCCATTCTCCTTAACCGATACGGCCAAACGATGGCTTTATTACTTAGAACCAGGGTCTATCACAACTTGGGGAGGACTTAAAAAGAAATTCCTAGAAAAATTCTTTCCCGCTTCTAGAGCAAATAACATTAGGAAGGAAATCTATGGAATTAGGCAAGCCCTTGGGGAGTCTTTATCAGAATATTGGGAACGTTTCAAAGAGCTTTGCGCTAGCTTTCCCCACCATCATATTTCTGACCCCTCTTTAATACAGTATTTTTATTCTGGACTACTAACCACGGATAGAAATACAGTAGATGCTGCAGCAGGTGGTGCCTTAGCTGATAAAACCCCTACTGAAGCAAGAGAGCTAATTTCACGGATGGCTGAGAACTCTCAGAACTTTGGCAACAGAGCATCCGAGCTCGACAATTCCTTAACAAAAGAGGTTAGTGAACTTAAATCACAAATGTTGAATATGACTACACTGCTCACTTCTTTTGTACAAGGTGGAAATATGAAAGTTGCAAAATGTGGAGTTTGCGGTCTCATTAGACATCCTAATGACAAGTGTCCCGACCTTGTGGAAGAGGCAAATGTCATTAGGAAGTACGATCCTCATGGAAACACTTATAATGCCGGTTGGAGAGACAACCCTAACCTTAGATGGGGAAATGACGCCCAACGATCCGCACAAGCAACTTCATCCTCGAACAATCAAGGTAGTAATTTGGAAGATTTGGTAAAAGCTCTTGCTACCAACACAATTTCTTTCCAAAATGAAATGAAGCAACAAATGTCCCAATTGACCAATGCAATAAGCAAACTAGAAGGTAAAGGCAAGCTTCCAGCTCAGCCCGATCACGCAAATGTAAGTGCCATCTCGCTTAGAAGCGGTACAATTCTGCAAACCCCTCTAAGCAATGAAAAGGTACCTTCTAACCTACCCTTCTAG

Coding sequence (CDS)

ATGGGCCAAGTTAGAGAAAAAACTCTTAGAGAGCTTTCTGAACCTAATGAAGACCAAAGGCCCCTATGTATAGTAATTCCCCCAACAACTCAACCCTTCGAGCTTAAACCTAGACTAATCCACCTCTTACCAATTTATAAAGGTAGCTCAGGTGAAAACCCTCATAAACACCTTAAGGATTTCCATATGTTTTGTGACTCTATAAGACCCCACGGAGTTTTTGAAGAACAACTTAATCTTAGAGCCTTTCCATTCTCCTTAACCGATACGGCCAAACGATGGCTTTATTACTTAGAACCAGGGTCTATCACAACTTGGGGAGGACTTAAAAAGAAATTCCTAGAAAAATTCTTTCCCGCTTCTAGAGCAAATAACATTAGGAAGGAAATCTATGGAATTAGGCAAGCCCTTGGGGAGTCTTTATCAGAATATTGGGAACGTTTCAAAGAGCTTTGCGCTAGCTTTCCCCACCATCATATTTCTGACCCCTCTTTAATACAGTATTTTTATTCTGGACTACTAACCACGGATAGAAATACAGTAGATGCTGCAGCAGGTGGTGCCTTAGCTGATAAAACCCCTACTGAAGCAAGAGAGCTAATTTCACGGATGGCTGAGAACTCTCAGAACTTTGGCAACAGAGCATCCGAGCTCGACAATTCCTTAACAAAAGAGGTTAGTGAACTTAAATCACAAATGTTGAATATGACTACACTGCTCACTTCTTTTGTACAAGGTGGAAATATGAAAGTTGCAAAATGTGGAGTTTGCGGTCTCATTAGACATCCTAATGACAAGTGTCCCGACCTTGTGGAAGAGGCAAATGTCATTAGGAAGTACGATCCTCATGGAAACACTTATAATGCCGGTTGGAGAGACAACCCTAACCTTAGATGGGGAAATGACGCCCAACGATCCGCACAAGCAACTTCATCCTCGAACAATCAAGGTAGTAATTTGGAAGATTTGGTAAAAGCTCTTGCTACCAACACAATTTCTTTCCAAAATGAAATGAAGCAACAAATGTCCCAATTGACCAATGCAATAAGCAAACTAGAAGGTAAAGGCAAGCTTCCAGCTCAGCCCGATCACGCAAATGTAAGTGCCATCTCGCTTAGAAGCGGTACAATTCTGCAAACCCCTCTAAGCAATGAAAAGGTACCTTCTAACCTACCCTTCTAG

Protein sequence

MGQVREKTLRELSEPNEDQRPLCIVIPPTTQPFELKPRLIHLLPIYKGSSGENPHKHLKDFHMFCDSIRPHGVFEEQLNLRAFPFSLTDTAKRWLYYLEPGSITTWGGLKKKFLEKFFPASRANNIRKEIYGIRQALGESLSEYWERFKELCASFPHHHISDPSLIQYFYSGLLTTDRNTVDAAAGGALADKTPTEARELISRMAENSQNFGNRASELDNSLTKEVSELKSQMLNMTTLLTSFVQGGNMKVAKCGVCGLIRHPNDKCPDLVEEANVIRKYDPHGNTYNAGWRDNPNLRWGNDAQRSAQATSSSNNQGSNLEDLVKALATNTISFQNEMKQQMSQLTNAISKLEGKGKLPAQPDHANVSAISLRSGTILQTPLSNEKVPSNLPF

Homology

[Close]

BLAST of PI0001942 vs. ExPASy TrEMBL
Match: A0A5A7SRF5 (Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold96G00500 PE=4 SV=1)

HSP 1 Score: 643.7 bits (1659), Expect = 5.1e-181
Identity = 309/392 (78.83%), Postives = 352/392 (89.80%), Query Frame = 0


Query: 1   MGQVREKTLRELSEPNEDQRPLCIVIPPTTQPFELKPRLIHLLPIYKGSSGENPHKHLKD 60
           MG+VREKT+R+L E +EDQRPLCIVI  TTQPFELKPRLIHLLPI+KG+SGE+PHKHLKD
Sbjct: 61  MGEVREKTIRKLDELDEDQRPLCIVISLTTQPFELKPRLIHLLPIFKGNSGEDPHKHLKD 120

Query: 61  FHMFCDSIRPHGVFEEQLNLRAFPFSLTDTAKRWLYYLEPGSITTWGGLKKKFLEKFFPA 120
           FHM CDS+RPHG+ EEQLNLRAFPFSLTD AKRWLYYLEPGSITTWG LKKKFLEKFFPA
Sbjct: 121 FHMVCDSMRPHGISEEQLNLRAFPFSLTDVAKRWLYYLEPGSITTWGSLKKKFLEKFFPA 180

Query: 121 SRANNIRKEIYGIRQALGESLSEYWERFKELCASFPHHHISDPSLIQYFYSGLLTTDRNT 180
           SR NNIRKEIYGIRQA GESL +YWE+FKELCA+FPHHHI  PSLIQYFY GLL++DRNT
Sbjct: 181 SRTNNIRKEIYGIRQAFGESLLKYWEKFKELCANFPHHHIFYPSLIQYFYFGLLSSDRNT 240

Query: 181 VDAAAGGALADKTPTEARELISRMAENSQNFGNRASELDNSLTKEVSELKSQMLNMTTLL 240
           VDAAAGGALA+K PTEARELISRMA+NSQ FGNRASEL+NSLTKEVSELKSQMLNMTTLL
Sbjct: 241 VDAAAGGALANKIPTEARELISRMAKNSQRFGNRASELENSLTKEVSELKSQMLNMTTLL 300

Query: 241 TSFVQGGNMKVAKCGVCGLIRHPNDKCPDLVEEANVIRKYDPHGNTYNAGWRDNPNLRWG 300
           TSFVQG  +KV KC VCGL+ HPNDKCP+++EE N+++KYDP+ NTYN GWRDNP LRWG
Sbjct: 301 TSFVQGTPLKVTKCRVCGLVGHPNDKCPEVIEELNIVKKYDPYSNTYNTGWRDNPILRWG 360

Query: 301 NDAQRSAQATSSSNNQGSNLEDLVKALATNTISFQNEMKQQMSQLTNAISKLEGKGKLPA 360
           ND Q+  QA ++S+NQ +NL+D++KALATNT+SFQ EMKQQM+QLT  ISK++GKGKLPA
Sbjct: 361 NDNQKHTQAPTTSSNQSTNLKDIIKALATNTLSFQQEMKQQMTQLTTTISKMDGKGKLPA 420

Query: 361 QPDHANVSAISLRSGTILQTPLSNEKVPSNLP 393
           QP+HANVS ISLRSG IL TP + EK  +++P
Sbjct: 421 QPNHANVSVISLRSGKILDTPSTKEKKVTSIP 452

[Close]

BLAST of PI0001942 vs. ExPASy TrEMBL
Match: A0A5A7USL5 (Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold274G004630 PE=4 SV=1)

HSP 1 Score: 576.6 bits (1485), Expect = 7.7e-161
Identity = 290/394 (73.60%), Postives = 320/394 (81.22%), Query Frame = 0


Query: 1   MGQVREKTLRELSEPNEDQRPLCIVIPPTTQPFELKPRLIHLLPIYKGSSGENPHKHLKD 60
           MG+VREK LREL+EPNED RPLCIVIPPTTQPFELKP LIHLLPI+KGSSGE+PHKHLKD
Sbjct: 1   MGEVREKILRELAEPNEDHRPLCIVIPPTTQPFELKPGLIHLLPIFKGSSGEDPHKHLKD 60

Query: 61  FHMFCDSIRPHGVFEEQLNLRAFPFSLTDTAKRWLYYLEPGSITTWGGLKKKFLEKFFPA 120
           FHM CDS+RP+ + EEQLNLRAFPF LTD AK WLYYLEPGSITTWG LKKKFLEKFFPA
Sbjct: 61  FHMVCDSMRPYSISEEQLNLRAFPFFLTDVAKIWLYYLEPGSITTWGSLKKKFLEKFFPA 120

Query: 121 SRANNIRKEIYGIRQALGESLSEYWERFKELCASFPHHHISDPSLIQYFYSGLLTTDRNT 180
           SRANNIRKEIYGIRQA GESLS+YWERFKELCAS PH+HI DPSLIQYFYSGLL+ DRNT
Sbjct: 121 SRANNIRKEIYGIRQAFGESLSKYWERFKELCASLPHYHIFDPSLIQYFYSGLLSFDRNT 180

Query: 181 VDAAAGGALADKTPTEARELISRMAENSQNFGNRASELDNSLTKEVSELKSQMLNMTTLL 240
           VDAA GGALADKTPTEAR+LISRM ENSQ+FGNRASELDNSLTKEVSELKSQMLNMTTLL
Sbjct: 181 VDAATGGALADKTPTEARKLISRMMENSQSFGNRASELDNSLTKEVSELKSQMLNMTTLL 240

Query: 241 TSFVQGGNMKVAKCGVCGLIRHPNDKCPDLVEEANVIRKYDPHGNTYNAGWRDNPNLRWG 300
           TSFVQG  +KV KCGVCGL+ HPNDKCP+++E+ N++R+YDPH                 
Sbjct: 241 TSFVQGTPLKVTKCGVCGLVGHPNDKCPEVIEDVNIVRRYDPH----------------- 300

Query: 301 NDAQRSAQATSSSNNQGSNLEDLVKALATNTISFQNEMKQQMSQLTNAISKLEGKGKLPA 360
                           G+NLED++KALATNT+SFQ EMKQQM+QLT AISK++GKGKLPA
Sbjct: 301 ----------------GTNLEDIIKALATNTLSFQQEMKQQMTQLTTAISKMDGKGKLPA 353

Query: 361 QPDHANVSAISLRSGTILQTP----LSNEKVPSN 391
           QPDHAN          + QTP    L N+K P N
Sbjct: 361 QPDHAN--------KRLKQTPHHLILKNDKSPLN 353

[Close]

BLAST of PI0001942 vs. ExPASy TrEMBL
Match: A0A5A7V0Q7 (Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold753G00020 PE=4 SV=1)

HSP 1 Score: 540.4 bits (1391), Expect = 6.1e-150
Identity = 260/319 (81.50%), Postives = 290/319 (90.91%), Query Frame = 0


Query: 68  IRPHGVFEEQLNLRAFPFSLTDTAKRWLYYLEPGSITTWGGLKKKFLEKFFPASRANNIR 127
           +RPHG+ +EQLNLRAFPFSLTD AKRWLYY+EPGSITTWG LKKKFLEKFFPASRANNIR
Sbjct: 1   MRPHGISKEQLNLRAFPFSLTDVAKRWLYYVEPGSITTWGSLKKKFLEKFFPASRANNIR 60

Query: 128 KEIYGIRQALGESLSEYWERFKELCASFPHHHISDPSLIQYFYSGLLTTDRNTVDAAAGG 187
           KEIYGIRQA GESLS+YW+R KELCASFPHHHISDPSLIQYF+SGLL+ DRNT+D  AGG
Sbjct: 61  KEIYGIRQAFGESLSKYWKRSKELCASFPHHHISDPSLIQYFHSGLLSFDRNTIDVVAGG 120

Query: 188 ALADKTPTEARELISRMAENSQNFGNRASELDNSLTKEVSELKSQMLNMTTLLTSFVQGG 247
           ALADKTPTEARELISRM ENSQ+FGNRASELDNSLTKEVSELKSQMLNMTTLLTSFVQG 
Sbjct: 121 ALADKTPTEARELISRMVENSQSFGNRASELDNSLTKEVSELKSQMLNMTTLLTSFVQGT 180

Query: 248 NMKVAKCGVCGLIRHPNDKCPDLVEEANVIRKYDPHGNTYNAGWRDNPNLRWGNDAQRSA 307
             KV KCGVCGL+ HPNDKC  ++E+ N++R+YDPH NTYN+GWRDNPNLRWGND Q+  
Sbjct: 181 PPKVTKCGVCGLVGHPNDKCLKVIEDVNIVRRYDPHSNTYNSGWRDNPNLRWGNDNQKHT 240

Query: 308 QATSSSNNQGSNLEDLVKALATNTISFQNEMKQQMSQLTNAISKLEGKGKLPAQPDHANV 367
           QA S+S+NQG+NLED++KAL TNT+SFQ EMKQQM+QLT AISK++GKGKLPAQPD+ANV
Sbjct: 241 QAPSTSSNQGTNLEDIIKALGTNTLSFQQEMKQQMTQLTTAISKMDGKGKLPAQPDYANV 300

Query: 368 SAISLRSGTILQTPLSNEK 387
           SAISLRSG IL TP + EK
Sbjct: 301 SAISLRSGKILDTPTTKEK 319

[Close]

BLAST of PI0001942 vs. ExPASy TrEMBL
Match: A0A5A7ULC7 (Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold29G00020 PE=4 SV=1)

HSP 1 Score: 538.5 bits (1386), Expect = 2.3e-149
Identity = 274/381 (71.92%), Postives = 306/381 (80.31%), Query Frame = 0


Query: 1   MGQVREKTLRELSEPNEDQRPLCIVIPPTTQPFELKPRLIHLLPIYKGSSGENPHKHLKD 60
           MG+VREKTL+EL +P+EDQRPLCIVIPPTTQPFELK  LIHLLPI+KG            
Sbjct: 1   MGKVREKTLKELVDPDEDQRPLCIVIPPTTQPFELKQGLIHLLPIFKGK----------- 60

Query: 61  FHMFCDSIRPHGVFEEQLNLRAFPFSLTDTAKRWLYYLEPGSITTWGGLKKKFLEKFFPA 120
                                          KRWLYYLEPGSITTWG LKKKFLEKFFPA
Sbjct: 61  -------------------------------KRWLYYLEPGSITTWGSLKKKFLEKFFPA 120

Query: 121 SRANNIRKEIYGIRQALGESLSEYWERFKELCASFPHHHISDPSLIQYFYSGLLTTDRNT 180
           S+ANNIRKEIYGIRQA GESLS YWERFKELCASFP  HIS+PSLIQYFYSGLL++D+NT
Sbjct: 121 SKANNIRKEIYGIRQAFGESLSRYWERFKELCASFPFLHISNPSLIQYFYSGLLSSDKNT 180

Query: 181 VDAAAGGALADKTPTEARELISRMAENSQNFGNRASELDNSLTKEVSELKSQMLNMTTLL 240
           VDAAAGGALADKTP EA+ELISRMAENSQ+FGNRASEL NSLTKEVSE+KSQMLNMTTLL
Sbjct: 181 VDAAAGGALADKTPIEAQELISRMAENSQSFGNRASELVNSLTKEVSEIKSQMLNMTTLL 240

Query: 241 TSFVQGGNMKVAKCGVCGLIRHPNDKCPDLVEEANVIRKYDPHGNTYNAGWRDNPNLRWG 300
           TSFVQG  +KV KCGV G + HPNDKCP+++E+ N+++KYDPHGNTYN+GWRDNPNLRWG
Sbjct: 241 TSFVQGTPIKVTKCGVFGFVGHPNDKCPEVIEDVNIVQKYDPHGNTYNSGWRDNPNLRWG 300

Query: 301 NDAQRSAQATSSSNNQGSNLEDLVKALATNTISFQNEMKQQMSQLTNAISKLEGKGKLPA 360
           ND Q   QA  +S+NQG+NLE ++KALATNT SFQ EMKQQ++QLT AISK++GKGKL A
Sbjct: 301 NDNQTHTQAPPTSSNQGTNLEVIIKALATNTFSFQQEMKQQITQLTTAISKMDGKGKLLA 339

Query: 361 QPDHANVSAISLRSGTILQTP 382
           QPDHANVSAISLRS  I Q P
Sbjct: 361 QPDHANVSAISLRSDAIQQVP 339

[Close]

BLAST of PI0001942 vs. ExPASy TrEMBL
Match: A0A5D3CFE7 (Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold315G00840 PE=4 SV=1)

HSP 1 Score: 535.0 bits (1377), Expect = 2.6e-148
Identity = 273/386 (70.73%), Postives = 302/386 (78.24%), Query Frame = 0


Query: 1   MGQVREKTLRELSEPNEDQRPLCIVIPPTTQPFELKPRLIHLLPIYKGSSGENPHKHLKD 60
           MG+VREKTLREL+EP+EDQRPLCIVIPPTTQPFELK  LIHLLPI+KG            
Sbjct: 1   MGEVREKTLRELAEPDEDQRPLCIVIPPTTQPFELKSGLIHLLPIFKG------------ 60

Query: 61  FHMFCDSIRPHGVFEEQLNLRAFPFSLTDTAKRWLYYLEPGSITTWGGLKKKFLEKFFPA 120
                                                 +P SITTWG LKKKFLEKFF A
Sbjct: 61  --------------------------------------KPSSITTWGSLKKKFLEKFFLA 120

Query: 121 SRANNIRKEIYGIRQALGESLSEYWERFKELCASFPHHHISDPSLIQYFYSGLLTTDRNT 180
           SRANNIRKEIYGIRQA  ESLSEYWERFKELCASFPHHHI DPSL QYFYSGLL++DRNT
Sbjct: 121 SRANNIRKEIYGIRQAFEESLSEYWERFKELCASFPHHHIFDPSLFQYFYSGLLSSDRNT 180

Query: 181 VDAAAGGALADKTPTEARELISRMAENSQNFGNRASELDNSLTKEVSELKSQMLNMTTLL 240
           VDA AG ALADKTPTEA ELISRMAEN Q+FGNRAS+L+N LTKEVSELKS+MLNMTTLL
Sbjct: 181 VDAVAGRALADKTPTEAWELISRMAENFQSFGNRASKLENYLTKEVSELKSKMLNMTTLL 240

Query: 241 TSFVQGGNMKVAKCGVCGLIRHPNDKCPDLVEEANVIRKYDPHGNTYNAGWRDNPNLRWG 300
           TSFVQG   KV KCGVCGL+ HPNDKCP+++E+ N++R+YDPHGNTYN GWRD PNLRWG
Sbjct: 241 TSFVQGTPFKVTKCGVCGLVGHPNDKCPEVIEDINIVRRYDPHGNTYNLGWRDKPNLRWG 300

Query: 301 NDAQRSAQATSSSNNQGSNLEDLVKALATNTISFQNEMKQQMSQLTNAISKLEGKGKLPA 360
           ND Q   QA S+S+NQG+NLED++KAL TNT+SFQ EMKQQM+QLT AISK++GKGKLPA
Sbjct: 301 NDKQNHTQAPSTSSNQGTNLEDIIKALTTNTLSFQQEMKQQMTQLTTAISKMDGKGKLPA 336

Query: 361 QPDHANVSAISLRSGTILQTPLSNEK 387
           QPDHANVSAISLRSG IL TP + EK
Sbjct: 361 QPDHANVSAISLRSGKILDTPTTKEK 336

[Close]

BLAST of PI0001942 vs. NCBI nr
Match: KAA0031967.1 (retrotransposon gag protein [Cucumis melo var. makuwa] >TYK16787.1 retrotransposon gag protein [Cucumis melo var. makuwa])

HSP 1 Score: 643.7 bits (1659), Expect = 1.1e-180
Identity = 309/392 (78.83%), Postives = 352/392 (89.80%), Query Frame = 0


Query: 1   MGQVREKTLRELSEPNEDQRPLCIVIPPTTQPFELKPRLIHLLPIYKGSSGENPHKHLKD 60
           MG+VREKT+R+L E +EDQRPLCIVI  TTQPFELKPRLIHLLPI+KG+SGE+PHKHLKD
Sbjct: 61  MGEVREKTIRKLDELDEDQRPLCIVISLTTQPFELKPRLIHLLPIFKGNSGEDPHKHLKD 120

Query: 61  FHMFCDSIRPHGVFEEQLNLRAFPFSLTDTAKRWLYYLEPGSITTWGGLKKKFLEKFFPA 120
           FHM CDS+RPHG+ EEQLNLRAFPFSLTD AKRWLYYLEPGSITTWG LKKKFLEKFFPA
Sbjct: 121 FHMVCDSMRPHGISEEQLNLRAFPFSLTDVAKRWLYYLEPGSITTWGSLKKKFLEKFFPA 180

Query: 121 SRANNIRKEIYGIRQALGESLSEYWERFKELCASFPHHHISDPSLIQYFYSGLLTTDRNT 180
           SR NNIRKEIYGIRQA GESL +YWE+FKELCA+FPHHHI  PSLIQYFY GLL++DRNT
Sbjct: 181 SRTNNIRKEIYGIRQAFGESLLKYWEKFKELCANFPHHHIFYPSLIQYFYFGLLSSDRNT 240

Query: 181 VDAAAGGALADKTPTEARELISRMAENSQNFGNRASELDNSLTKEVSELKSQMLNMTTLL 240
           VDAAAGGALA+K PTEARELISRMA+NSQ FGNRASEL+NSLTKEVSELKSQMLNMTTLL
Sbjct: 241 VDAAAGGALANKIPTEARELISRMAKNSQRFGNRASELENSLTKEVSELKSQMLNMTTLL 300

Query: 241 TSFVQGGNMKVAKCGVCGLIRHPNDKCPDLVEEANVIRKYDPHGNTYNAGWRDNPNLRWG 300
           TSFVQG  +KV KC VCGL+ HPNDKCP+++EE N+++KYDP+ NTYN GWRDNP LRWG
Sbjct: 301 TSFVQGTPLKVTKCRVCGLVGHPNDKCPEVIEELNIVKKYDPYSNTYNTGWRDNPILRWG 360

Query: 301 NDAQRSAQATSSSNNQGSNLEDLVKALATNTISFQNEMKQQMSQLTNAISKLEGKGKLPA 360
           ND Q+  QA ++S+NQ +NL+D++KALATNT+SFQ EMKQQM+QLT  ISK++GKGKLPA
Sbjct: 361 NDNQKHTQAPTTSSNQSTNLKDIIKALATNTLSFQQEMKQQMTQLTTTISKMDGKGKLPA 420

Query: 361 QPDHANVSAISLRSGTILQTPLSNEKVPSNLP 393
           QP+HANVS ISLRSG IL TP + EK  +++P
Sbjct: 421 QPNHANVSVISLRSGKILDTPSTKEKKVTSIP 452

[Close]

BLAST of PI0001942 vs. NCBI nr
Match: KAA0058150.1 (uncharacterized protein E6C27_scaffold274G004630 [Cucumis melo var. makuwa])

HSP 1 Score: 576.6 bits (1485), Expect = 1.6e-160
Identity = 290/394 (73.60%), Postives = 320/394 (81.22%), Query Frame = 0


Query: 1   MGQVREKTLRELSEPNEDQRPLCIVIPPTTQPFELKPRLIHLLPIYKGSSGENPHKHLKD 60
           MG+VREK LREL+EPNED RPLCIVIPPTTQPFELKP LIHLLPI+KGSSGE+PHKHLKD
Sbjct: 1   MGEVREKILRELAEPNEDHRPLCIVIPPTTQPFELKPGLIHLLPIFKGSSGEDPHKHLKD 60

Query: 61  FHMFCDSIRPHGVFEEQLNLRAFPFSLTDTAKRWLYYLEPGSITTWGGLKKKFLEKFFPA 120
           FHM CDS+RP+ + EEQLNLRAFPF LTD AK WLYYLEPGSITTWG LKKKFLEKFFPA
Sbjct: 61  FHMVCDSMRPYSISEEQLNLRAFPFFLTDVAKIWLYYLEPGSITTWGSLKKKFLEKFFPA 120

Query: 121 SRANNIRKEIYGIRQALGESLSEYWERFKELCASFPHHHISDPSLIQYFYSGLLTTDRNT 180
           SRANNIRKEIYGIRQA GESLS+YWERFKELCAS PH+HI DPSLIQYFYSGLL+ DRNT
Sbjct: 121 SRANNIRKEIYGIRQAFGESLSKYWERFKELCASLPHYHIFDPSLIQYFYSGLLSFDRNT 180

Query: 181 VDAAAGGALADKTPTEARELISRMAENSQNFGNRASELDNSLTKEVSELKSQMLNMTTLL 240
           VDAA GGALADKTPTEAR+LISRM ENSQ+FGNRASELDNSLTKEVSELKSQMLNMTTLL
Sbjct: 181 VDAATGGALADKTPTEARKLISRMMENSQSFGNRASELDNSLTKEVSELKSQMLNMTTLL 240

Query: 241 TSFVQGGNMKVAKCGVCGLIRHPNDKCPDLVEEANVIRKYDPHGNTYNAGWRDNPNLRWG 300
           TSFVQG  +KV KCGVCGL+ HPNDKCP+++E+ N++R+YDPH                 
Sbjct: 241 TSFVQGTPLKVTKCGVCGLVGHPNDKCPEVIEDVNIVRRYDPH----------------- 300

Query: 301 NDAQRSAQATSSSNNQGSNLEDLVKALATNTISFQNEMKQQMSQLTNAISKLEGKGKLPA 360
                           G+NLED++KALATNT+SFQ EMKQQM+QLT AISK++GKGKLPA
Sbjct: 301 ----------------GTNLEDIIKALATNTLSFQQEMKQQMTQLTTAISKMDGKGKLPA 353

Query: 361 QPDHANVSAISLRSGTILQTP----LSNEKVPSN 391
           QPDHAN          + QTP    L N+K P N
Sbjct: 361 QPDHAN--------KRLKQTPHHLILKNDKSPLN 353

[Close]

BLAST of PI0001942 vs. NCBI nr
Match: KAA0061138.1 (retrotransposon gag protein [Cucumis melo var. makuwa])

HSP 1 Score: 540.4 bits (1391), Expect = 1.3e-149
Identity = 260/319 (81.50%), Postives = 290/319 (90.91%), Query Frame = 0


Query: 68  IRPHGVFEEQLNLRAFPFSLTDTAKRWLYYLEPGSITTWGGLKKKFLEKFFPASRANNIR 127
           +RPHG+ +EQLNLRAFPFSLTD AKRWLYY+EPGSITTWG LKKKFLEKFFPASRANNIR
Sbjct: 1   MRPHGISKEQLNLRAFPFSLTDVAKRWLYYVEPGSITTWGSLKKKFLEKFFPASRANNIR 60

Query: 128 KEIYGIRQALGESLSEYWERFKELCASFPHHHISDPSLIQYFYSGLLTTDRNTVDAAAGG 187
           KEIYGIRQA GESLS+YW+R KELCASFPHHHISDPSLIQYF+SGLL+ DRNT+D  AGG
Sbjct: 61  KEIYGIRQAFGESLSKYWKRSKELCASFPHHHISDPSLIQYFHSGLLSFDRNTIDVVAGG 120

Query: 188 ALADKTPTEARELISRMAENSQNFGNRASELDNSLTKEVSELKSQMLNMTTLLTSFVQGG 247
           ALADKTPTEARELISRM ENSQ+FGNRASELDNSLTKEVSELKSQMLNMTTLLTSFVQG 
Sbjct: 121 ALADKTPTEARELISRMVENSQSFGNRASELDNSLTKEVSELKSQMLNMTTLLTSFVQGT 180

Query: 248 NMKVAKCGVCGLIRHPNDKCPDLVEEANVIRKYDPHGNTYNAGWRDNPNLRWGNDAQRSA 307
             KV KCGVCGL+ HPNDKC  ++E+ N++R+YDPH NTYN+GWRDNPNLRWGND Q+  
Sbjct: 181 PPKVTKCGVCGLVGHPNDKCLKVIEDVNIVRRYDPHSNTYNSGWRDNPNLRWGNDNQKHT 240

Query: 308 QATSSSNNQGSNLEDLVKALATNTISFQNEMKQQMSQLTNAISKLEGKGKLPAQPDHANV 367
           QA S+S+NQG+NLED++KAL TNT+SFQ EMKQQM+QLT AISK++GKGKLPAQPD+ANV
Sbjct: 241 QAPSTSSNQGTNLEDIIKALGTNTLSFQQEMKQQMTQLTTAISKMDGKGKLPAQPDYANV 300

Query: 368 SAISLRSGTILQTPLSNEK 387
           SAISLRSG IL TP + EK
Sbjct: 301 SAISLRSGKILDTPTTKEK 319

[Close]

BLAST of PI0001942 vs. NCBI nr
Match: KAA0056713.1 (retrotransposon gag protein [Cucumis melo var. makuwa])

HSP 1 Score: 538.5 bits (1386), Expect = 4.8e-149
Identity = 274/381 (71.92%), Postives = 306/381 (80.31%), Query Frame = 0


Query: 1   MGQVREKTLRELSEPNEDQRPLCIVIPPTTQPFELKPRLIHLLPIYKGSSGENPHKHLKD 60
           MG+VREKTL+EL +P+EDQRPLCIVIPPTTQPFELK  LIHLLPI+KG            
Sbjct: 1   MGKVREKTLKELVDPDEDQRPLCIVIPPTTQPFELKQGLIHLLPIFKGK----------- 60

Query: 61  FHMFCDSIRPHGVFEEQLNLRAFPFSLTDTAKRWLYYLEPGSITTWGGLKKKFLEKFFPA 120
                                          KRWLYYLEPGSITTWG LKKKFLEKFFPA
Sbjct: 61  -------------------------------KRWLYYLEPGSITTWGSLKKKFLEKFFPA 120

Query: 121 SRANNIRKEIYGIRQALGESLSEYWERFKELCASFPHHHISDPSLIQYFYSGLLTTDRNT 180
           S+ANNIRKEIYGIRQA GESLS YWERFKELCASFP  HIS+PSLIQYFYSGLL++D+NT
Sbjct: 121 SKANNIRKEIYGIRQAFGESLSRYWERFKELCASFPFLHISNPSLIQYFYSGLLSSDKNT 180

Query: 181 VDAAAGGALADKTPTEARELISRMAENSQNFGNRASELDNSLTKEVSELKSQMLNMTTLL 240
           VDAAAGGALADKTP EA+ELISRMAENSQ+FGNRASEL NSLTKEVSE+KSQMLNMTTLL
Sbjct: 181 VDAAAGGALADKTPIEAQELISRMAENSQSFGNRASELVNSLTKEVSEIKSQMLNMTTLL 240

Query: 241 TSFVQGGNMKVAKCGVCGLIRHPNDKCPDLVEEANVIRKYDPHGNTYNAGWRDNPNLRWG 300
           TSFVQG  +KV KCGV G + HPNDKCP+++E+ N+++KYDPHGNTYN+GWRDNPNLRWG
Sbjct: 241 TSFVQGTPIKVTKCGVFGFVGHPNDKCPEVIEDVNIVQKYDPHGNTYNSGWRDNPNLRWG 300

Query: 301 NDAQRSAQATSSSNNQGSNLEDLVKALATNTISFQNEMKQQMSQLTNAISKLEGKGKLPA 360
           ND Q   QA  +S+NQG+NLE ++KALATNT SFQ EMKQQ++QLT AISK++GKGKL A
Sbjct: 301 NDNQTHTQAPPTSSNQGTNLEVIIKALATNTFSFQQEMKQQITQLTTAISKMDGKGKLLA 339

Query: 361 QPDHANVSAISLRSGTILQTP 382
           QPDHANVSAISLRS  I Q P
Sbjct: 361 QPDHANVSAISLRSDAIQQVP 339

[Close]

BLAST of PI0001942 vs. NCBI nr
Match: TYK10613.1 (retrotransposon gag protein [Cucumis melo var. makuwa])

HSP 1 Score: 535.0 bits (1377), Expect = 5.3e-148
Identity = 273/386 (70.73%), Postives = 302/386 (78.24%), Query Frame = 0


Query: 1   MGQVREKTLRELSEPNEDQRPLCIVIPPTTQPFELKPRLIHLLPIYKGSSGENPHKHLKD 60
           MG+VREKTLREL+EP+EDQRPLCIVIPPTTQPFELK  LIHLLPI+KG            
Sbjct: 1   MGEVREKTLRELAEPDEDQRPLCIVIPPTTQPFELKSGLIHLLPIFKG------------ 60

Query: 61  FHMFCDSIRPHGVFEEQLNLRAFPFSLTDTAKRWLYYLEPGSITTWGGLKKKFLEKFFPA 120
                                                 +P SITTWG LKKKFLEKFF A
Sbjct: 61  --------------------------------------KPSSITTWGSLKKKFLEKFFLA 120

Query: 121 SRANNIRKEIYGIRQALGESLSEYWERFKELCASFPHHHISDPSLIQYFYSGLLTTDRNT 180
           SRANNIRKEIYGIRQA  ESLSEYWERFKELCASFPHHHI DPSL QYFYSGLL++DRNT
Sbjct: 121 SRANNIRKEIYGIRQAFEESLSEYWERFKELCASFPHHHIFDPSLFQYFYSGLLSSDRNT 180

Query: 181 VDAAAGGALADKTPTEARELISRMAENSQNFGNRASELDNSLTKEVSELKSQMLNMTTLL 240
           VDA AG ALADKTPTEA ELISRMAEN Q+FGNRAS+L+N LTKEVSELKS+MLNMTTLL
Sbjct: 181 VDAVAGRALADKTPTEAWELISRMAENFQSFGNRASKLENYLTKEVSELKSKMLNMTTLL 240

Query: 241 TSFVQGGNMKVAKCGVCGLIRHPNDKCPDLVEEANVIRKYDPHGNTYNAGWRDNPNLRWG 300
           TSFVQG   KV KCGVCGL+ HPNDKCP+++E+ N++R+YDPHGNTYN GWRD PNLRWG
Sbjct: 241 TSFVQGTPFKVTKCGVCGLVGHPNDKCPEVIEDINIVRRYDPHGNTYNLGWRDKPNLRWG 300

Query: 301 NDAQRSAQATSSSNNQGSNLEDLVKALATNTISFQNEMKQQMSQLTNAISKLEGKGKLPA 360
           ND Q   QA S+S+NQG+NLED++KAL TNT+SFQ EMKQQM+QLT AISK++GKGKLPA
Sbjct: 301 NDKQNHTQAPSTSSNQGTNLEDIIKALTTNTLSFQQEMKQQMTQLTTAISKMDGKGKLPA 336

Query: 361 QPDHANVSAISLRSGTILQTPLSNEK 387
           QPDHANVSAISLRSG IL TP + EK
Sbjct: 361 QPDHANVSAISLRSGKILDTPTTKEK 336

The following BLAST results are available for this feature:

BLAST of PI0001942 vs.


Match Name	E-value	Identity	Description

BLAST of PI0001942 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7SRF5	5.1e-181	78.83	Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaf...	[more]
A0A5A7USL5	7.7e-161	73.60	Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 ...	[more]
A0A5A7V0Q7	6.1e-150	81.50	Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaf...	[more]
A0A5A7ULC7	2.3e-149	71.92	Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaf...	[more]
A0A5D3CFE7	2.6e-148	70.73	Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaf...	[more]

BLAST of PI0001942 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0031967.1	1.1e-180	78.83	retrotransposon gag protein [Cucumis melo var. makuwa] >TYK16787.1 retrotranspos...	[more]
KAA0058150.1	1.6e-160	73.60	uncharacterized protein E6C27_scaffold274G004630 [Cucumis melo var. makuwa]	[more]
KAA0061138.1	1.3e-149	81.50	retrotransposon gag protein [Cucumis melo var. makuwa]	[more]
KAA0056713.1	4.8e-149	71.92	retrotransposon gag protein [Cucumis melo var. makuwa]	[more]
TYK10613.1	5.3e-148	70.73	retrotransposon gag protein [Cucumis melo var. makuwa]	[more]

BLAST of PI0001942 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 335..355
None	No IPR available	PANTHER	PTHR24559:SF334	SUBFAMILY NOT NAMED	coord: 54..305
None	No IPR available	PANTHER	PTHR24559	TRANSPOSON TY3-I GAG-POL POLYPROTEIN	coord: 54..305
IPR005162	Retrotransposon gag domain	PFAM	PF03732	Retrotrans_gag	coord: 82..173 e-value: 1.2E-18 score: 67.2

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
PI0001942.1	PI0001942.1	mRNA