PI0001253 (gene) Melon (PI 482460) v1

Overview
NamePI0001253
Typegene
OrganismCucumis metuliferus (Melon (PI 482460) v1)
DescriptionLow-molecular-weight cysteine-rich
Locationchr02: 1364236 .. 1365367 (+)
RNA-Seq ExpressionPI0001253
SyntenyPI0001253
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
GATTTTAAACAATTCAGTTTAGATTGTTTGTTGTCTTTGGCAAACAAAGGTTCCAAAATGGCCTCAAAATTGCTTGGAGTTGAGCTCCAAAAAAAGACATGGCAATCAAAAATGGCAAGACTTCTTCTTTTCATTTGCTTGCTAATGAGCTACTCCTTCTTCTATGGTAATATGCTTCATCCTACTCTAGTTGAAATCATTTGTATGGTGTATTAATGTTTTTATTTTAATATAAGTTTGAAGCTTTTTACACTAAAATCTTTTTTTTAGAATTTTATAATGTATTAATACTCACTGGATTCAAAAGATTCAACAAAAGGATTTTATAAATTAGAAAAAAAACAATGCTTCAAGTTTGGTAAAATCGATAAAGAATTTATCACTAACGGGTAAACATTCAATCATTATTTTTGTTATTAGCTCCTTAATTCTTCAAAAGTTGTGATATATAACTTTTGACATTTCATAAATGCTATAAAAATTTCTTTATAGTAGAACTTTAGAATGTTAGACAAATACTGAGAATCTAGAATAATGTCTCGACTATATGTAATGAAAACTGGGATTAGAATAAATATTGTTCTAGATCTTAGCTTAGGTTCAAAATTCTTATAAAATTACTCCCAATGATGGTTTTTAAACATTTTTTAAAAGTTAGTATAAAGGTAAAAGTATAGTTATTACGAATAATAATATTTTTCAAACAAACGACCGTCTTCAAGACCATATTTTTATAACATCCCATTATCATATCTCATGATATAAAAAGTACATACCAAGTAAAGTATATTATTTTAAAAAAATCTTCATAATTTCTTTGTTATTTTCTCAAGGTATATGAAGCAACTATGATAGTGAAAACATTTTGTTTAAATTTATGGAACTGATTTTTGTTTTCTATGAGTAATGATAGCACAAGCAAAGAACTGTCATAGAGTGTGGACTTGCAAAGGAGACATCAGGTGTTGGGAAGATTGCAAGAATCAACACAATGGAAAGGGACTTTGTGACTTGTACACTGCACCTTCGGTTCCTAAACAATGCTTTTGTGCCTATAAATGTTAAAACGTTTATGTTACTCCTCATCAACCATCTAAGTCAGAGCTAATAACATTTGATCTTTTGTATTTAC

mRNA sequence

GATTTTAAACAATTCAGTTTAGATTGTTTGTTGTCTTTGGCAAACAAAGGTTCCAAAATGGCCTCAAAATTGCTTGGAGTTGAGCTCCAAAAAAAGACATGGCAATCAAAAATGGCAAGACTTCTTCTTTTCATTTGCTTGCTAATGAGCTACTCCTTCTTCTATGCACAAGCAAAGAACTGTCATAGAGTGTGGACTTGCAAAGGAGACATCAGGTGTTGGGAAGATTGCAAGAATCAACACAATGGAAAGGGACTTTGTGACTTGTACACTGCACCTTCGGTTCCTAAACAATGCTTTTGTGCCTATAAATGTTAAAACGTTTATGTTACTCCTCATCAACCATCTAAGTCAGAGCTAATAACATTTGATCTTTTGTATTTAC

Coding sequence (CDS)

ATGGCCTCAAAATTGCTTGGAGTTGAGCTCCAAAAAAAGACATGGCAATCAAAAATGGCAAGACTTCTTCTTTTCATTTGCTTGCTAATGAGCTACTCCTTCTTCTATGCACAAGCAAAGAACTGTCATAGAGTGTGGACTTGCAAAGGAGACATCAGGTGTTGGGAAGATTGCAAGAATCAACACAATGGAAAGGGACTTTGTGACTTGTACACTGCACCTTCGGTTCCTAAACAATGCTTTTGTGCCTATAAATGTTAA

Protein sequence

MASKLLGVELQKKTWQSKMARLLLFICLLMSYSFFYAQAKNCHRVWTCKGDIRCWEDCKNQHNGKGLCDLYTAPSVPKQCFCAYKC
Homology
BLAST of PI0001253 vs. ExPASy Swiss-Prot
Match: P82732 (Putative defensin-like protein 184 OS=Arabidopsis thaliana OX=3702 GN=LCR18 PE=3 SV=1)

HSP 1 Score: 78.2 bits (191), Expect = 5.1e-14
Identity = 35/73 (47.95%), Postives = 46/73 (63.01%), Query Frame = 0

Query: 17 SKMARLLLFICLLMSYS---FFYAQAKNCHRVWTCKGDIRCWEDCKNQHNGKGLCDLYTA 76
          S +  +L+ +  L+S S       +AK C + WTC+G+ +C E C   HNG G+CDLYTA
Sbjct: 4  SSILFVLIIVVFLISSSGNKKMVGEAKKCDQTWTCEGEDKCREKCLTLHNGVGVCDLYTA 63

Query: 77 PSVPKQCFCAYKC 87
          P VPKQCFC Y C
Sbjct: 64 PLVPKQCFCHYDC 76

BLAST of PI0001253 vs. ExPASy Swiss-Prot
Match: P82754 (Putative defensin-like protein 185 OS=Arabidopsis thaliana OX=3702 GN=LCR39 PE=3 SV=1)

HSP 1 Score: 49.7 bits (117), Expect = 1.9e-05
Identity = 27/73 (36.99%), Postives = 37/73 (50.68%), Query Frame = 0

Query: 22 LLLFICLLMSYSFFYAQAKNCHRVWTCKG---DIRCWEDCKNQHNGKGLCDLYTAPSVPK 81
          LLL +  ++S S    +AK C   WTC G   + +C E+C  +H G G C+LYT P  P 
Sbjct: 8  LLLVVFFVISSS---GEAKTCSDGWTCLGPKEEDKCKENCMAKHKGVGTCNLYTIPEFPA 67

Query: 82 -----QCFCAYKC 87
                C C + C
Sbjct: 68 PITYYMCDCMFDC 77

BLAST of PI0001253 vs. ExPASy TrEMBL
Match: A0A1S4DZ19 (putative defensin-like protein 184 OS=Cucumis melo OX=3656 GN=LOC103492238 PE=4 SV=1)

HSP 1 Score: 159.5 bits (402), Expect = 6.4e-36
Identity = 74/86 (86.05%), Postives = 77/86 (89.53%), Query Frame = 0

Query: 1  MASKLLGVELQKKTWQSKMARLLLFICLLMSYSFFYAQAKNCHRVWTCKGDIRCWEDCKN 60
          MASKLL VELQKK      A LLLFICLLMS+ FFYAQA+NCHRVW+CKGDIRCWEDCKN
Sbjct: 1  MASKLLRVELQKK------ATLLLFICLLMSFFFFYAQARNCHRVWSCKGDIRCWEDCKN 60

Query: 61 QHNGKGLCDLYTAPSVPKQCFCAYKC 87
          QHNGKGLCDLYTAPSVPKQCFCAYKC
Sbjct: 61 QHNGKGLCDLYTAPSVPKQCFCAYKC 80

BLAST of PI0001253 vs. ExPASy TrEMBL
Match: A0A6J1HN36 (putative defensin-like protein 184 isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111465678 PE=4 SV=1)

HSP 1 Score: 144.4 bits (363), Expect = 2.1e-31
Identity = 64/79 (81.01%), Postives = 69/79 (87.34%), Query Frame = 0

Query: 8  VELQKKTWQSKMARLLLFICLLMSYSFFYAQAKNCHRVWTCKGDIRCWEDCKNQHNGKGL 67
          V+LQ K   SKMA LLLF+C L SY F YAQA+NCHRVW CKGDIRCWE+CKN+HNGKGL
Sbjct: 9  VQLQTKPCLSKMATLLLFLCFLFSY-FSYAQARNCHRVWNCKGDIRCWEECKNEHNGKGL 68

Query: 68 CDLYTAPSVPKQCFCAYKC 87
          CDLYTAPSVPKQCFCAYKC
Sbjct: 69 CDLYTAPSVPKQCFCAYKC 86

BLAST of PI0001253 vs. ExPASy TrEMBL
Match: A0A6J1HSC8 (putative defensin-like protein 184 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111465678 PE=4 SV=1)

HSP 1 Score: 144.1 bits (362), Expect = 2.8e-31
Identity = 62/79 (78.48%), Postives = 68/79 (86.08%), Query Frame = 0

Query: 8  VELQKKTWQSKMARLLLFICLLMSYSFFYAQAKNCHRVWTCKGDIRCWEDCKNQHNGKGL 67
          V+LQ K   SKMA LLLF+C L SY  + AQA+NCHRVW CKGDIRCWE+CKN+HNGKGL
Sbjct: 9  VQLQTKPCLSKMATLLLFLCFLFSYFSYAAQARNCHRVWNCKGDIRCWEECKNEHNGKGL 68

Query: 68 CDLYTAPSVPKQCFCAYKC 87
          CDLYTAPSVPKQCFCAYKC
Sbjct: 69 CDLYTAPSVPKQCFCAYKC 87

BLAST of PI0001253 vs. ExPASy TrEMBL
Match: A0A6J1F252 (putative defensin-like protein 184 isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111439087 PE=4 SV=1)

HSP 1 Score: 141.7 bits (356), Expect = 1.4e-30
Identity = 66/87 (75.86%), Postives = 73/87 (83.91%), Query Frame = 0

Query: 1  MASKL-LGVELQKKTWQSKMARLLLFICLLMSYSFFYAQAKNCHRVWTCKGDIRCWEDCK 60
          MASK+   + LQ K   SKMA LLLF+C L + SF YA+A+NCHRVW CKGDIRCWEDCK
Sbjct: 1  MASKVHTRLHLQTKPCLSKMATLLLFLCFLFT-SFSYAEARNCHRVWNCKGDIRCWEDCK 60

Query: 61 NQHNGKGLCDLYTAPSVPKQCFCAYKC 87
          N+HNGKGLCDLYTAPSVPKQCFCAYKC
Sbjct: 61 NEHNGKGLCDLYTAPSVPKQCFCAYKC 86

BLAST of PI0001253 vs. ExPASy TrEMBL
Match: A0A6J1F2J5 (putative defensin-like protein 184 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111439087 PE=4 SV=1)

HSP 1 Score: 138.7 bits (348), Expect = 1.2e-29
Identity = 63/87 (72.41%), Postives = 71/87 (81.61%), Query Frame = 0

Query: 1  MASKL-LGVELQKKTWQSKMARLLLFICLLMSYSFFYAQAKNCHRVWTCKGDIRCWEDCK 60
          MASK+   + LQ K   SKMA LLLF+C L +   + A+A+NCHRVW CKGDIRCWEDCK
Sbjct: 1  MASKVHTRLHLQTKPCLSKMATLLLFLCFLFTSFSYAAEARNCHRVWNCKGDIRCWEDCK 60

Query: 61 NQHNGKGLCDLYTAPSVPKQCFCAYKC 87
          N+HNGKGLCDLYTAPSVPKQCFCAYKC
Sbjct: 61 NEHNGKGLCDLYTAPSVPKQCFCAYKC 87

BLAST of PI0001253 vs. NCBI nr
Match: XP_031740117.1 (putative defensin-like protein 184 [Cucumis sativus])

HSP 1 Score: 179.5 bits (454), Expect = 1.2e-41
Identity = 81/86 (94.19%), Postives = 83/86 (96.51%), Query Frame = 0

Query: 1  MASKLLGVELQKKTWQSKMARLLLFICLLMSYSFFYAQAKNCHRVWTCKGDIRCWEDCKN 60
          MASKLL VELQKKTWQSKMARLLLFI LLMSY FFYAQA+NCHRVW+CKGDIRCWEDCKN
Sbjct: 1  MASKLLRVELQKKTWQSKMARLLLFISLLMSYFFFYAQARNCHRVWSCKGDIRCWEDCKN 60

Query: 61 QHNGKGLCDLYTAPSVPKQCFCAYKC 87
          QHNGKGLCDLYTAPSVPKQCFCAYKC
Sbjct: 61 QHNGKGLCDLYTAPSVPKQCFCAYKC 86

BLAST of PI0001253 vs. NCBI nr
Match: XP_016900965.1 (PREDICTED: putative defensin-like protein 184 [Cucumis melo])

HSP 1 Score: 159.5 bits (402), Expect = 1.3e-35
Identity = 74/86 (86.05%), Postives = 77/86 (89.53%), Query Frame = 0

Query: 1  MASKLLGVELQKKTWQSKMARLLLFICLLMSYSFFYAQAKNCHRVWTCKGDIRCWEDCKN 60
          MASKLL VELQKK      A LLLFICLLMS+ FFYAQA+NCHRVW+CKGDIRCWEDCKN
Sbjct: 1  MASKLLRVELQKK------ATLLLFICLLMSFFFFYAQARNCHRVWSCKGDIRCWEDCKN 60

Query: 61 QHNGKGLCDLYTAPSVPKQCFCAYKC 87
          QHNGKGLCDLYTAPSVPKQCFCAYKC
Sbjct: 61 QHNGKGLCDLYTAPSVPKQCFCAYKC 80

BLAST of PI0001253 vs. NCBI nr
Match: XP_022965971.1 (putative defensin-like protein 184 isoform X2 [Cucurbita maxima])

HSP 1 Score: 144.4 bits (363), Expect = 4.4e-31
Identity = 64/79 (81.01%), Postives = 69/79 (87.34%), Query Frame = 0

Query: 8  VELQKKTWQSKMARLLLFICLLMSYSFFYAQAKNCHRVWTCKGDIRCWEDCKNQHNGKGL 67
          V+LQ K   SKMA LLLF+C L SY F YAQA+NCHRVW CKGDIRCWE+CKN+HNGKGL
Sbjct: 9  VQLQTKPCLSKMATLLLFLCFLFSY-FSYAQARNCHRVWNCKGDIRCWEECKNEHNGKGL 68

Query: 68 CDLYTAPSVPKQCFCAYKC 87
          CDLYTAPSVPKQCFCAYKC
Sbjct: 69 CDLYTAPSVPKQCFCAYKC 86

BLAST of PI0001253 vs. NCBI nr
Match: XP_022965959.1 (putative defensin-like protein 184 isoform X1 [Cucurbita maxima])

HSP 1 Score: 144.1 bits (362), Expect = 5.8e-31
Identity = 62/79 (78.48%), Postives = 68/79 (86.08%), Query Frame = 0

Query: 8  VELQKKTWQSKMARLLLFICLLMSYSFFYAQAKNCHRVWTCKGDIRCWEDCKNQHNGKGL 67
          V+LQ K   SKMA LLLF+C L SY  + AQA+NCHRVW CKGDIRCWE+CKN+HNGKGL
Sbjct: 9  VQLQTKPCLSKMATLLLFLCFLFSYFSYAAQARNCHRVWNCKGDIRCWEECKNEHNGKGL 68

Query: 68 CDLYTAPSVPKQCFCAYKC 87
          CDLYTAPSVPKQCFCAYKC
Sbjct: 69 CDLYTAPSVPKQCFCAYKC 87

BLAST of PI0001253 vs. NCBI nr
Match: XP_022932583.1 (putative defensin-like protein 184 isoform X2 [Cucurbita moschata])

HSP 1 Score: 141.7 bits (356), Expect = 2.9e-30
Identity = 66/87 (75.86%), Postives = 73/87 (83.91%), Query Frame = 0

Query: 1  MASKL-LGVELQKKTWQSKMARLLLFICLLMSYSFFYAQAKNCHRVWTCKGDIRCWEDCK 60
          MASK+   + LQ K   SKMA LLLF+C L + SF YA+A+NCHRVW CKGDIRCWEDCK
Sbjct: 1  MASKVHTRLHLQTKPCLSKMATLLLFLCFLFT-SFSYAEARNCHRVWNCKGDIRCWEDCK 60

Query: 61 NQHNGKGLCDLYTAPSVPKQCFCAYKC 87
          N+HNGKGLCDLYTAPSVPKQCFCAYKC
Sbjct: 61 NEHNGKGLCDLYTAPSVPKQCFCAYKC 86

BLAST of PI0001253 vs. TAIR 10
Match: AT3G04945.1 (low-molecular-weight cysteine-rich 18 )

HSP 1 Score: 78.2 bits (191), Expect = 3.6e-15
Identity = 35/73 (47.95%), Postives = 46/73 (63.01%), Query Frame = 0

Query: 17 SKMARLLLFICLLMSYS---FFYAQAKNCHRVWTCKGDIRCWEDCKNQHNGKGLCDLYTA 76
          S +  +L+ +  L+S S       +AK C + WTC+G+ +C E C   HNG G+CDLYTA
Sbjct: 4  SSILFVLIIVVFLISSSGNKKMVGEAKKCDQTWTCEGEDKCREKCLTLHNGVGVCDLYTA 63

Query: 77 PSVPKQCFCAYKC 87
          P VPKQCFC Y C
Sbjct: 64 PLVPKQCFCHYDC 76

BLAST of PI0001253 vs. TAIR 10
Match: AT3G23167.1 (low-molecular-weight cysteine-rich 39 )

HSP 1 Score: 49.7 bits (117), Expect = 1.4e-06
Identity = 27/73 (36.99%), Postives = 37/73 (50.68%), Query Frame = 0

Query: 22 LLLFICLLMSYSFFYAQAKNCHRVWTCKG---DIRCWEDCKNQHNGKGLCDLYTAPSVPK 81
          LLL +  ++S S    +AK C   WTC G   + +C E+C  +H G G C+LYT P  P 
Sbjct: 8  LLLVVFFVISSS---GEAKTCSDGWTCLGPKEEDKCKENCMAKHKGVGTCNLYTIPEFPA 67

Query: 82 -----QCFCAYKC 87
                C C + C
Sbjct: 68 PITYYMCDCMFDC 77

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
P827325.1e-1447.95Putative defensin-like protein 184 OS=Arabidopsis thaliana OX=3702 GN=LCR18 PE=3... [more]
P827541.9e-0536.99Putative defensin-like protein 185 OS=Arabidopsis thaliana OX=3702 GN=LCR39 PE=3... [more]
Match NameE-valueIdentityDescription
A0A1S4DZ196.4e-3686.05putative defensin-like protein 184 OS=Cucumis melo OX=3656 GN=LOC103492238 PE=4 ... [more]
A0A6J1HN362.1e-3181.01putative defensin-like protein 184 isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC... [more]
A0A6J1HSC82.8e-3178.48putative defensin-like protein 184 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC... [more]
A0A6J1F2521.4e-3075.86putative defensin-like protein 184 isoform X2 OS=Cucurbita moschata OX=3662 GN=L... [more]
A0A6J1F2J51.2e-2972.41putative defensin-like protein 184 isoform X1 OS=Cucurbita moschata OX=3662 GN=L... [more]
Match NameE-valueIdentityDescription
XP_031740117.11.2e-4194.19putative defensin-like protein 184 [Cucumis sativus][more]
XP_016900965.11.3e-3586.05PREDICTED: putative defensin-like protein 184 [Cucumis melo][more]
XP_022965971.14.4e-3181.01putative defensin-like protein 184 isoform X2 [Cucurbita maxima][more]
XP_022965959.15.8e-3178.48putative defensin-like protein 184 isoform X1 [Cucurbita maxima][more]
XP_022932583.12.9e-3075.86putative defensin-like protein 184 isoform X2 [Cucurbita moschata][more]
Match NameE-valueIdentityDescription
AT3G04945.13.6e-1547.95low-molecular-weight cysteine-rich 18 [more]
AT3G23167.11.4e-0636.99low-molecular-weight cysteine-rich 39 [more]
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
PI0001253.1PI0001253.1mRNA