PI0001139 (gene) Melon (PI 482460) v1

Overview
NamePI0001139
Typegene
OrganismCucumis metuliferus (Melon (PI 482460) v1)
DescriptionCytochrome b6-F complex subunit 5
Locationtig00003626: 1034426 .. 1034831 (-)
RNA-Seq ExpressionPI0001139
SyntenyPI0001139
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCCTACTATCACTAGTTATTTCGGTTTTCTACTAGCAGTTTTAACTATAACCTCAGCTCTATTTATCGGTCTGAACAAGATACGACTTATTTGATTAAAATTAATTGAATGCACAATGAAAAAAAAGAGATTTCGGTCTTATTCAATATATTCTATATATTCTATATTGTAGAGTTCTTTACCTTGTCAATTCAATTTCCAATTCTTGGTCATTGAGATTCATGGGCAATACCGATTAATATTTTAAGGATAGATATTACCTCTCCTTTTCCTCGTTCAACTAAATTGAAATGATTGAAGTTTTTCTATTTGGAATCGTATTAGGTCTAATTCCTATGACTTTGGCTGGATTATTTGTGACCGCATATTTACAATACAGACGGGGGGATCAGTTGGACCTTTGA

mRNA sequence

ATGCCTACTATCACTAGTTATTTCGGTTTTCTACTAGCAGTTTTAACTATAACCTCAGCTCTATTTATCGTTTTTCTATTTGGAATCGTATTAGGTCTAATTCCTATGACTTTGGCTGGATTATTTGTGACCGCATATTTACAATACAGACGGGGGGATCAGTTGGACCTTTGA

Coding sequence (CDS)

ATGCCTACTATCACTAGTTATTTCGGTTTTCTACTAGCAGTTTTAACTATAACCTCAGCTCTATTTATCGTTTTTCTATTTGGAATCGTATTAGGTCTAATTCCTATGACTTTGGCTGGATTATTTGTGACCGCATATTTACAATACAGACGGGGGGATCAGTTGGACCTTTGA

Protein sequence

MPTITSYFGFLLAVLTITSALFIVFLFGIVLGLIPMTLAGLFVTAYLQYRRGDQLDL
Homology
[Close]
BLAST of PI0001139 vs. ExPASy Swiss-Prot
Match: Q3V516 (Cytochrome b6-f complex subunit 5 OS=Acorus calamus OX=4465 GN=petG PE=3 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 3.0e-10
Identity = 33/34 (97.06%), Postives = 34/34 (100.00%), Query Frame = 0 

Query: 24 VFLFGIVLGLIPMTLAGLFVTAYLQYRRGDQLDL 58
          VFLFGIVLGLIP+TLAGLFVTAYLQYRRGDQLDL
Sbjct: 4  VFLFGIVLGLIPITLAGLFVTAYLQYRRGDQLDL 37

[Close]
BLAST of PI0001139 vs. ExPASy Swiss-Prot
Match: Q5QA79 (Cytochrome b6-f complex subunit 5 OS=Acorus gramineus OX=55184 GN=petG PE=3 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 3.0e-10
Identity = 33/34 (97.06%), Postives = 34/34 (100.00%), Query Frame = 0 

Query: 24 VFLFGIVLGLIPMTLAGLFVTAYLQYRRGDQLDL 58
          VFLFGIVLGLIP+TLAGLFVTAYLQYRRGDQLDL
Sbjct: 4  VFLFGIVLGLIPITLAGLFVTAYLQYRRGDQLDL 37

[Close]
BLAST of PI0001139 vs. ExPASy Swiss-Prot
Match: A1EA27 (Cytochrome b6-f complex subunit 5 OS=Agrostis stolonifera OX=63632 GN=petG PE=3 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 3.0e-10
Identity = 33/34 (97.06%), Postives = 34/34 (100.00%), Query Frame = 0 

Query: 24 VFLFGIVLGLIPMTLAGLFVTAYLQYRRGDQLDL 58
          VFLFGIVLGLIP+TLAGLFVTAYLQYRRGDQLDL
Sbjct: 4  VFLFGIVLGLIPITLAGLFVTAYLQYRRGDQLDL 37

[Close]
BLAST of PI0001139 vs. ExPASy Swiss-Prot
Match: Q7FNS7 (Cytochrome b6-f complex subunit 5 OS=Atropa belladonna OX=33113 GN=petG PE=3 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 3.0e-10
Identity = 33/34 (97.06%), Postives = 34/34 (100.00%), Query Frame = 0 

Query: 24 VFLFGIVLGLIPMTLAGLFVTAYLQYRRGDQLDL 58
          VFLFGIVLGLIP+TLAGLFVTAYLQYRRGDQLDL
Sbjct: 4  VFLFGIVLGLIPITLAGLFVTAYLQYRRGDQLDL 37

[Close]
BLAST of PI0001139 vs. ExPASy Swiss-Prot
Match: P69453 (Cytochrome b6-f complex subunit 5 OS=Beta trigyna OX=19769 GN=petG PE=3 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 3.0e-10
Identity = 33/34 (97.06%), Postives = 34/34 (100.00%), Query Frame = 0 

Query: 24 VFLFGIVLGLIPMTLAGLFVTAYLQYRRGDQLDL 58
          VFLFGIVLGLIP+TLAGLFVTAYLQYRRGDQLDL
Sbjct: 4  VFLFGIVLGLIPITLAGLFVTAYLQYRRGDQLDL 37

[Close]
BLAST of PI0001139 vs. ExPASy TrEMBL
Match: A0A0A0KT11 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G576740 PE=3 SV=1)

HSP 1 Score: 98.6 bits (244), Expect = 9.0e-18
Identity = 55/57 (96.49%), Postives = 56/57 (98.25%), Query Frame = 0 

Query: 1  MPTITSYFGFLLAVLTITSALFIVFLFGIVLGLIPMTLAGLFVTAYLQYRRGDQLDL 58
          M TITSYFGFLLAVLTITSALFIVFLFGIVLGLIP+TLAGLFVTAYLQYRRGDQLDL
Sbjct: 1  MLTITSYFGFLLAVLTITSALFIVFLFGIVLGLIPITLAGLFVTAYLQYRRGDQLDL 57

[Close]
BLAST of PI0001139 vs. ExPASy TrEMBL
Match: A0A3S3NMV2 (Cytochrome b6-F complex subunit 5 OS=Cinnamomum micranthum f. kanehirae OX=337451 GN=CKAN_02722000 PE=3 SV=1)

HSP 1 Score: 84.7 bits (208), Expect = 1.3e-13
Identity = 51/63 (80.95%), Postives = 52/63 (82.54%), Query Frame = 0 

Query: 1  MPTITSYFGFLLAVLTITSALFI------VFLFGIVLGLIPMTLAGLFVTAYLQYRRGDQ 58
          M TITSYFGFLLA  TIT AL I      VFLFGIVLGLIP+TLAGLFVTAYLQYRRGDQ
Sbjct: 13 MTTITSYFGFLLAASTITPALLIKIEMIEVFLFGIVLGLIPITLAGLFVTAYLQYRRGDQ 72

[Close]
BLAST of PI0001139 vs. ExPASy TrEMBL
Match: A0A6A5LB28 (Cytochrome b6-f complex subunit 6 OS=Lupinus albus OX=3870 GN=Lal_00028291 PE=3 SV=1)

HSP 1 Score: 82.8 bits (203), Expect = 5.1e-13
Identity = 55/93 (59.14%), Postives = 56/93 (60.22%), Query Frame = 0 

Query: 1  MPTITSYFGFLLAVLTITSALFI------------------------------------V 58
          MPTITSYFGFLLA LTITSALFI                                    V
Sbjct: 1  MPTITSYFGFLLAALTITSALFIGLNIPQFLIVSISNFLVVGIHDITSPFPFKQIQMIEV 60

[Close]
BLAST of PI0001139 vs. ExPASy TrEMBL
Match: A0A5B6TKA9 (Cytochrome b6-f complex subunit 6 OS=Gossypium australe OX=47621 GN=petG PE=3 SV=1)

HSP 1 Score: 82.0 bits (201), Expect = 8.7e-13
Identity = 53/80 (66.25%), Postives = 54/80 (67.50%), Query Frame = 0 

Query: 1  MPTITSYFGFLLAVLTITSALFI-----------------------VFLFGIVLGLIPMT 58
          M TITSYFGFLLA LTIT ALFI                       VFLFGIVLGLIP+T
Sbjct: 1  MLTITSYFGFLLAALTITPALFIGLNKIHRTSFFLSPRTNQIEMIEVFLFGIVLGLIPIT 60

[Close]
BLAST of PI0001139 vs. ExPASy TrEMBL
Match: A0A6A5MQ83 (Cytochrome b6-f complex subunit 6 OS=Lupinus albus OX=3870 GN=Lal_00033879 PE=3 SV=1)

HSP 1 Score: 80.1 bits (196), Expect = 3.3e-12
Identity = 51/74 (68.92%), Postives = 52/74 (70.27%), Query Frame = 0 

Query: 1  MPTITSYFGFLLAVLTITSALFI-------------------VFLFGIVLGLIPMTLAGL 56
          MPTITSYFGFLLA LTI SALFI                   VFLFGIVLGLI +TLAGL
Sbjct: 1  MPTITSYFGFLLAALTINSALFIGLRWILPPPFLFKQIQMIEVFLFGIVLGLITITLAGL 60

[Close]
BLAST of PI0001139 vs. NCBI nr
Match: RWR97765.1 (cytochrome b6-F complex subunit 5 [Cinnamomum micranthum f. kanehirae] >RWR98313.1 cytochrome b6-F complex subunit 5 [Cinnamomum micranthum f. kanehirae] >RWR98318.1 cytochrome b6-F complex subunit 5 [Cinnamomum micranthum f. kanehirae])

HSP 1 Score: 84.7 bits (208), Expect = 2.8e-13
Identity = 51/63 (80.95%), Postives = 52/63 (82.54%), Query Frame = 0 

Query: 1  MPTITSYFGFLLAVLTITSALFI------VFLFGIVLGLIPMTLAGLFVTAYLQYRRGDQ 58
          M TITSYFGFLLA  TIT AL I      VFLFGIVLGLIP+TLAGLFVTAYLQYRRGDQ
Sbjct: 13 MTTITSYFGFLLAASTITPALLIKIEMIEVFLFGIVLGLIPITLAGLFVTAYLQYRRGDQ 72

[Close]
BLAST of PI0001139 vs. NCBI nr
Match: KAF1855872.1 (hypothetical protein Lal_00028291 [Lupinus albus])

HSP 1 Score: 82.8 bits (203), Expect = 1.0e-12
Identity = 55/93 (59.14%), Postives = 56/93 (60.22%), Query Frame = 0 

Query: 1  MPTITSYFGFLLAVLTITSALFI------------------------------------V 58
          MPTITSYFGFLLA LTITSALFI                                    V
Sbjct: 1  MPTITSYFGFLLAALTITSALFIGLNIPQFLIVSISNFLVVGIHDITSPFPFKQIQMIEV 60

[Close]
BLAST of PI0001139 vs. NCBI nr
Match: KAA3441743.1 (cytochrome b6-F complex subunit 5 [Gossypium australe])

HSP 1 Score: 82.0 bits (201), Expect = 1.8e-12
Identity = 53/80 (66.25%), Postives = 54/80 (67.50%), Query Frame = 0 

Query: 1  MPTITSYFGFLLAVLTITSALFI-----------------------VFLFGIVLGLIPMT 58
          M TITSYFGFLLA LTIT ALFI                       VFLFGIVLGLIP+T
Sbjct: 1  MLTITSYFGFLLAALTITPALFIGLNKIHRTSFFLSPRTNQIEMIEVFLFGIVLGLIPIT 60

[Close]
BLAST of PI0001139 vs. NCBI nr
Match: KAF1876954.1 (hypothetical protein Lal_00033879 [Lupinus albus])

HSP 1 Score: 80.1 bits (196), Expect = 6.8e-12
Identity = 51/74 (68.92%), Postives = 52/74 (70.27%), Query Frame = 0 

Query: 1  MPTITSYFGFLLAVLTITSALFI-------------------VFLFGIVLGLIPMTLAGL 56
          MPTITSYFGFLLA LTI SALFI                   VFLFGIVLGLI +TLAGL
Sbjct: 1  MPTITSYFGFLLAALTINSALFIGLRWILPPPFLFKQIQMIEVFLFGIVLGLITITLAGL 60

[Close]
BLAST of PI0001139 vs. NCBI nr
Match: MQL82473.1 (hypothetical protein [Colocasia esculenta])

HSP 1 Score: 80.1 bits (196), Expect = 6.8e-12
Identity = 48/61 (78.69%), Postives = 50/61 (81.97%), Query Frame = 0 

Query: 1  MPTITSYFGFLLAVLTITSALFI------VFLFGIVLGLIPMTLAGLFVTAYLQYRRGDQ 56
          MPTITSYFGFLLA  TIT AL I      V LFGI+LGLIP+TLAGLFVTAYLQYRRGDQ
Sbjct: 1  MPTITSYFGFLLAASTITPALLIEIKMIEVLLFGIMLGLIPITLAGLFVTAYLQYRRGDQ 60

[Close]
BLAST of PI0001139 vs. TAIR 10
Match: ATCG00600.1 (PETG )

HSP 1 Score: 63.5 bits (153), Expect = 6.1e-11
Identity = 32/33 (96.97%), Postives = 33/33 (100.00%), Query Frame = 0 

Query: 24 VFLFGIVLGLIPMTLAGLFVTAYLQYRRGDQLD 57
          VFLFGIVLGLIP+TLAGLFVTAYLQYRRGDQLD
Sbjct: 4  VFLFGIVLGLIPITLAGLFVTAYLQYRRGDQLD 36

The following BLAST results are available for this feature:
BLAST of PI0001139 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q3V5163.0e-1097.06Cytochrome b6-f complex subunit 5 OS=Acorus calamus OX=4465 GN=petG PE=3 SV=1[more]
Q5QA793.0e-1097.06Cytochrome b6-f complex subunit 5 OS=Acorus gramineus OX=55184 GN=petG PE=3 SV=1[more]
A1EA273.0e-1097.06Cytochrome b6-f complex subunit 5 OS=Agrostis stolonifera OX=63632 GN=petG PE=3 ... [more]
Q7FNS73.0e-1097.06Cytochrome b6-f complex subunit 5 OS=Atropa belladonna OX=33113 GN=petG PE=3 SV=... [more]
P694533.0e-1097.06Cytochrome b6-f complex subunit 5 OS=Beta trigyna OX=19769 GN=petG PE=3 SV=1[more]
BLAST of PI0001139 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KT119.0e-1896.49Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G576740 PE=3 SV=1[more]
A0A3S3NMV21.3e-1380.95Cytochrome b6-F complex subunit 5 OS=Cinnamomum micranthum f. kanehirae OX=33745... [more]
A0A6A5LB285.1e-1359.14Cytochrome b6-f complex subunit 6 OS=Lupinus albus OX=3870 GN=Lal_00028291 PE=3 ... [more]
A0A5B6TKA98.7e-1366.25Cytochrome b6-f complex subunit 6 OS=Gossypium australe OX=47621 GN=petG PE=3 SV... [more]
A0A6A5MQ833.3e-1268.92Cytochrome b6-f complex subunit 6 OS=Lupinus albus OX=3870 GN=Lal_00033879 PE=3 ... [more]
BLAST of PI0001139 vs. NCBI nr
Match NameE-valueIdentityDescription
RWR97765.12.8e-1380.95cytochrome b6-F complex subunit 5 [Cinnamomum micranthum f. kanehirae] >RWR98313... [more]
KAF1855872.11.0e-1259.14hypothetical protein Lal_00028291 [Lupinus albus][more]
KAA3441743.11.8e-1266.25cytochrome b6-F complex subunit 5 [Gossypium australe][more]
KAF1876954.16.8e-1268.92hypothetical protein Lal_00033879 [Lupinus albus][more]
MQL82473.16.8e-1278.69hypothetical protein [Colocasia esculenta][more]
BLAST of PI0001139 vs. TAIR 10
Match NameE-valueIdentityDescription
ATCG00600.16.1e-1196.97PETG [more]
InterPro
Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003683Cytochrome b6/f complex, subunit 5PFAMPF02529PetGcoord: 25..56
e-value: 2.1E-18
score: 65.8
IPR003683Cytochrome b6/f complex, subunit 5PANTHERPTHR35516FAMILY NOT NAMEDcoord: 24..57
IPR003683Cytochrome b6/f complex, subunit 5HAMAPMF_00432Cytb6_f_PetGcoord: 21..56
score: 15.41273
IPR007802Cytochrome b6-f complex subunit 6PFAMPF05115PetLcoord: 1..23
e-value: 1.8E-7
score: 30.9
NoneNo IPR availablePANTHERPTHR35516:SF9CYTOCHROME B6-F COMPLEX SUBUNIT 5coord: 24..57
IPR036099Cytochrome b6/f complex, subunit 5 superfamilySUPERFAMILY103446PetG subunit of the cytochrome b6f complexcoord: 29..54

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
PI0001139.1PI0001139.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0017004 cytochrome complex assembly
biological_process GO:0022900 electron transport chain
biological_process GO:0015979 photosynthesis
biological_process GO:0006357 regulation of transcription by RNA polymerase II
cellular_component GO:0009535 chloroplast thylakoid membrane
cellular_component GO:0009512 cytochrome b6f complex
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0005634 nucleus
cellular_component GO:0009522 photosystem I
molecular_function GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific
molecular_function GO:0045158 electron transporter, transferring electrons within cytochrome b6/f complex of photosystem II activity
molecular_function GO:0046983 protein dimerization activity
molecular_function GO:0000978 RNA polymerase II cis-regulatory region sequence-specific DNA binding
molecular_function GO:0009055 electron transfer activity